Wall clock time and date at job start Tue Mar 31 2020 18:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.07996 * 119.99776 * 204.80397 * 3 2 1 5 5 C 1.38809 * 120.00136 * 24.80464 * 3 2 1 6 6 N 1.31621 * 120.00077 * 9.81437 * 5 3 2 7 7 Si 1.86797 * 120.00106 * 189.81522 * 5 3 2 8 8 H 1.48497 * 109.47165 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47253 * 119.99909 * 7 5 3 10 10 H 1.48498 * 109.47390 * 239.99658 * 7 5 3 11 11 C 1.46499 * 120.00172 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47119 * 89.99489 * 11 2 1 13 13 C 1.53007 * 109.47121 * 179.97438 * 12 11 2 14 14 N 1.46499 * 109.47400 * 180.02562 * 13 12 11 15 15 C 1.46507 * 120.00113 * 270.00564 * 14 13 12 16 16 C 1.34775 * 119.99889 * 90.00123 * 14 13 12 17 17 O 1.21284 * 120.00155 * 355.17272 * 16 14 13 18 18 C 1.50702 * 119.99873 * 175.17510 * 16 14 13 19 19 H 1.08996 * 110.27036 * 27.79155 * 18 16 14 20 20 C 1.54347 * 110.30142 * 149.86732 * 18 16 14 21 21 C 1.54496 * 102.32190 * 145.21426 * 20 18 16 22 22 C 1.51368 * 105.21931 * 333.76023 * 21 20 18 23 23 C 1.38461 * 130.36671 * 197.12916 * 22 21 20 24 24 C 1.38326 * 120.19665 * 180.02562 * 23 22 21 25 25 F 1.35106 * 120.06085 * 180.02562 * 24 23 22 26 26 C 1.38478 * 119.87913 * 359.97438 * 24 23 22 27 27 C 1.38055 * 119.91128 * 0.02562 * 26 24 23 28 28 C 1.38243 * 109.75642 * 17.12673 * 22 21 20 29 29 H 1.09001 * 109.46545 * 265.77890 * 1 2 3 30 30 H 1.09003 * 109.46690 * 25.77356 * 1 2 3 31 31 H 1.08991 * 109.47010 * 145.77589 * 1 2 3 32 32 H 0.97001 * 120.00119 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.46756 * 329.99605 * 11 2 1 34 34 H 1.09002 * 109.47193 * 210.00029 * 11 2 1 35 35 H 1.09007 * 109.47396 * 60.00754 * 12 11 2 36 36 H 1.09002 * 109.47529 * 300.00334 * 12 11 2 37 37 H 1.09005 * 109.46794 * 60.00739 * 13 12 11 38 38 H 1.08992 * 109.47204 * 300.00698 * 13 12 11 39 39 H 1.09001 * 109.47062 * 95.18221 * 15 14 13 40 40 H 1.08999 * 109.46641 * 215.18275 * 15 14 13 41 41 H 1.08997 * 109.46731 * 335.18464 * 15 14 13 42 42 H 1.08998 * 110.81778 * 263.50360 * 20 18 16 43 43 H 1.08997 * 110.81929 * 27.05715 * 20 18 16 44 44 H 1.08998 * 110.33364 * 214.78791 * 21 20 18 45 45 H 1.09005 * 110.29977 * 92.71412 * 21 20 18 46 46 H 1.07998 * 119.89888 * 0.02562 * 23 22 21 47 47 H 1.07998 * 120.04151 * 180.02562 * 26 24 23 48 48 H 1.07996 * 119.87784 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1550 1.2290 -0.3924 5 6 1.5517 2.3326 0.5043 6 7 0.4110 2.2480 1.1554 7 14 2.3660 3.9958 0.2589 8 1 3.6302 3.8208 -0.5001 9 1 1.4525 4.8869 -0.5005 10 1 2.6621 4.6020 1.5818 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4438 14 7 3.4627 -3.4566 -2.8251 15 6 2.4865 -4.3024 -3.5165 16 6 4.5858 -3.0667 -3.4600 17 8 5.3512 -2.2961 -2.9202 18 6 4.8906 -3.5882 -4.8407 19 1 3.9666 -3.8339 -5.3640 20 6 5.6982 -2.5445 -5.6412 21 6 6.6316 -3.4329 -6.4934 22 6 6.7866 -4.7164 -5.7061 23 6 7.7286 -5.7256 -5.8127 24 6 7.6709 -6.8227 -4.9722 25 9 8.5917 -7.8057 -5.0782 26 6 6.6682 -6.9112 -4.0212 27 6 5.7292 -5.9048 -3.9152 28 6 5.7861 -4.8057 -4.7563 29 1 -0.3632 -0.0756 1.0249 30 1 -0.3633 0.9255 -0.4469 31 1 -0.3633 -0.8497 -0.5779 32 1 -0.0071 3.0494 1.5075 33 1 1.6085 -2.0285 0.5130 34 1 3.1500 -1.1386 0.5133 35 1 3.0416 -0.9499 -1.9568 36 1 1.5000 -1.8399 -1.9571 37 1 2.6293 -3.7946 -0.9302 38 1 4.1704 -2.9039 -0.9300 39 1 1.8153 -3.6765 -4.1045 40 1 3.0088 -4.9951 -4.1764 41 1 1.9091 -4.8649 -2.7828 42 1 5.0411 -1.9498 -6.2756 43 1 6.2757 -1.9059 -4.9728 44 1 7.5999 -2.9496 -6.6234 45 1 6.1780 -3.6366 -7.4635 46 1 8.5106 -5.6560 -6.5543 47 1 6.6209 -7.7664 -3.3633 48 1 4.9477 -5.9741 -3.1730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733775068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:18 Heat of formation + Delta-G solvation = -33.139497 kcal Electronic energy + Delta-G solvation = -28537.337784 eV Core-core repulsion = 24507.245714 eV Total energy + Delta-G solvation = -4030.092070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.21247 -41.05689 -39.19701 -36.40516 -35.55574 -35.27667 -32.58633 -31.77102 -30.20575 -29.15574 -28.17962 -27.02261 -25.85672 -25.17848 -23.32465 -22.69459 -21.56461 -21.28729 -20.17596 -19.00633 -17.54245 -17.40696 -16.88357 -16.60518 -16.34160 -15.97787 -15.82854 -15.11531 -14.92066 -14.75244 -14.31345 -14.03840 -13.93351 -13.42369 -13.31831 -13.27229 -13.08515 -12.92104 -12.78426 -12.65517 -12.41442 -12.20532 -11.93628 -11.86862 -11.60828 -11.27599 -11.21101 -11.01775 -10.90479 -10.79590 -10.71394 -10.35807 -10.11336 -9.86282 -9.81955 -9.67441 -9.30799 -8.77242 -8.67454 -8.42865 -6.63833 -5.68386 -3.13931 0.73698 0.84079 2.56829 2.94341 3.21314 3.41730 3.48834 3.52538 3.71283 4.03094 4.17364 4.41429 4.53512 4.55708 4.60136 4.76070 4.82445 4.90114 4.97793 5.15250 5.21898 5.24371 5.32865 5.38466 5.44725 5.49771 5.51200 5.54710 5.61880 5.70283 5.75247 5.80575 5.88883 5.97616 6.06837 6.11702 6.14067 6.19293 6.49719 6.50803 6.65097 6.82878 6.89249 7.08573 7.36850 7.44753 7.74345 7.88420 8.18215 8.49292 9.31468 9.94189 10.43863 11.38514 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002311 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.496956 B =12114.015378 C =12766.467828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.248 4.248 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.117 3.883 14 N -0.614 5.614 15 C 0.075 3.925 16 C 0.520 3.480 17 O -0.524 6.524 18 C -0.070 4.070 19 H 0.108 0.892 20 C -0.110 4.110 21 C -0.082 4.082 22 C -0.058 4.058 23 C -0.143 4.143 24 C 0.101 3.899 25 F -0.139 7.139 26 C -0.152 4.152 27 C -0.072 4.072 28 C -0.093 4.093 29 H 0.016 0.984 30 H 0.057 0.943 31 H -0.010 1.010 32 H 0.251 0.749 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.958 -20.610 -16.628 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.378 4.378 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.006 4.006 14 N -0.347 5.347 15 C -0.069 4.069 16 C 0.306 3.694 17 O -0.399 6.399 18 C -0.091 4.091 19 H 0.126 0.874 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.058 4.058 23 C -0.162 4.162 24 C 0.082 3.918 25 F -0.118 7.118 26 C -0.171 4.171 27 C -0.090 4.090 28 C -0.094 4.094 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.009 0.991 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.282 -20.087 -16.237 27.446 hybrid contribution 0.315 0.600 -0.081 0.682 sum 9.597 -19.487 -16.318 27.168 Atomic orbital electron populations 1.20756 0.82806 0.97065 0.97446 1.43884 1.01800 1.00755 1.86160 1.19267 0.99137 0.86021 1.33395 0.91473 1.25067 0.97868 0.98714 0.98252 1.70069 1.18779 1.27319 1.39563 0.86178 0.78800 0.84229 0.77381 1.20231 1.21687 1.21697 1.20625 0.96027 0.88400 0.92279 1.22577 0.99175 0.95416 1.01930 1.21632 1.01271 0.97141 0.80509 1.47959 1.20452 1.51256 1.15082 1.21858 0.92520 0.94436 0.98057 1.20290 0.80903 0.80925 0.87255 1.90728 1.48138 1.33951 1.67121 1.20906 0.99605 0.93750 0.94863 0.87409 1.22399 0.97733 0.96581 0.98008 1.21136 1.01114 0.91436 0.98155 1.20385 0.93584 0.95562 0.96246 1.20521 1.01063 0.93374 1.01226 1.17509 0.89208 0.86988 0.98112 1.91507 1.64495 1.60277 1.95501 1.21008 0.95411 1.01017 0.99664 1.20510 0.98458 0.92028 0.97997 1.20181 0.97035 0.94984 0.97177 0.96557 0.92437 0.99120 0.93876 0.94838 0.93495 0.91740 0.92938 0.90946 0.90194 0.92326 0.91446 0.90553 0.89661 0.88591 0.89798 0.89457 0.84708 0.84378 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 8.99 59.85 0.54 4.69 16 2 N -0.60 -15.77 2.92 -181.13 -0.53 -16.30 16 3 C -0.25 -7.12 9.65 -15.06 -0.15 -7.27 16 4 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 5 C 0.00 -0.04 5.10 -17.43 -0.09 -0.13 16 6 N -0.91 -27.32 10.70 55.49 0.59 -26.72 16 7 Si 0.90 22.61 29.56 -169.99 -5.03 17.59 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 C 0.15 3.26 5.69 -4.05 -0.02 3.24 16 12 C -0.15 -2.69 5.86 -26.73 -0.16 -2.85 16 13 C 0.12 1.65 5.41 -4.04 -0.02 1.63 16 14 N -0.61 -7.48 2.87 -181.56 -0.52 -8.00 16 15 C 0.07 0.60 9.86 59.85 0.59 1.19 16 16 C 0.52 7.08 6.58 -10.99 -0.07 7.01 16 17 O -0.52 -9.52 15.40 5.55 0.09 -9.43 16 18 C -0.07 -0.70 2.40 -91.89 -0.22 -0.92 16 19 H 0.11 0.82 6.46 -51.93 -0.34 0.49 16 20 C -0.11 -1.03 6.54 -25.24 -0.17 -1.19 16 21 C -0.08 -0.60 6.77 -26.77 -0.18 -0.79 16 22 C -0.06 -0.53 6.14 -104.21 -0.64 -1.16 16 23 C -0.14 -1.27 10.02 -39.47 -0.40 -1.66 16 24 C 0.10 0.96 7.30 -39.46 -0.29 0.68 16 25 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 26 C -0.15 -1.34 10.03 -39.56 -0.40 -1.74 16 27 C -0.07 -0.66 9.68 -39.54 -0.38 -1.04 16 28 C -0.09 -0.91 5.54 -104.19 -0.58 -1.49 16 29 H 0.02 0.43 7.83 -51.93 -0.41 0.03 16 30 H 0.06 1.58 6.74 -51.93 -0.35 1.23 16 31 H -0.01 -0.21 8.10 -51.93 -0.42 -0.63 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 38 H 0.08 1.25 7.49 -51.93 -0.39 0.86 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.41 6.42 -51.93 -0.33 0.08 16 41 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.14 6.98 -51.93 -0.36 0.78 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.13 1.05 8.03 -52.49 -0.42 0.63 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -34.31 392.59 -9.67 -43.98 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.60 Total: -3.86 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.63 Total: -1.80 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.46 Total: -51.02 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.31 -9.67 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733775068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.839 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds