Wall clock time and date at job start Tue Mar 31 2020 18:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.07996 * 119.99776 * 204.80397 * 3 2 1 5 5 C 1.38809 * 120.00136 * 24.80464 * 3 2 1 6 6 N 1.31621 * 120.00077 * 9.81437 * 5 3 2 7 7 Si 1.86797 * 120.00106 * 189.81522 * 5 3 2 8 8 H 1.48497 * 109.47165 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47253 * 119.99909 * 7 5 3 10 10 H 1.48498 * 109.47390 * 239.99658 * 7 5 3 11 11 C 1.46499 * 120.00172 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47119 * 89.99489 * 11 2 1 13 13 C 1.53007 * 109.47121 * 179.97438 * 12 11 2 14 14 N 1.46499 * 109.47400 * 180.02562 * 13 12 11 15 15 C 1.46507 * 120.00113 * 270.00564 * 14 13 12 16 16 C 1.34775 * 119.99889 * 90.00123 * 14 13 12 17 17 O 1.21284 * 120.00155 * 355.17272 * 16 14 13 18 18 C 1.50702 * 119.99873 * 175.17510 * 16 14 13 19 19 H 1.08996 * 110.27036 * 27.79155 * 18 16 14 20 20 C 1.54347 * 110.30142 * 149.86732 * 18 16 14 21 21 C 1.54496 * 102.32190 * 145.21426 * 20 18 16 22 22 C 1.51368 * 105.21931 * 333.76023 * 21 20 18 23 23 C 1.38461 * 130.36671 * 197.12916 * 22 21 20 24 24 C 1.38326 * 120.19665 * 180.02562 * 23 22 21 25 25 F 1.35106 * 120.06085 * 180.02562 * 24 23 22 26 26 C 1.38478 * 119.87913 * 359.97438 * 24 23 22 27 27 C 1.38055 * 119.91128 * 0.02562 * 26 24 23 28 28 C 1.38243 * 109.75642 * 17.12673 * 22 21 20 29 29 H 1.09001 * 109.46545 * 265.77890 * 1 2 3 30 30 H 1.09003 * 109.46690 * 25.77356 * 1 2 3 31 31 H 1.08991 * 109.47010 * 145.77589 * 1 2 3 32 32 H 0.97001 * 120.00119 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.46756 * 329.99605 * 11 2 1 34 34 H 1.09002 * 109.47193 * 210.00029 * 11 2 1 35 35 H 1.09007 * 109.47396 * 60.00754 * 12 11 2 36 36 H 1.09002 * 109.47529 * 300.00334 * 12 11 2 37 37 H 1.09005 * 109.46794 * 60.00739 * 13 12 11 38 38 H 1.08992 * 109.47204 * 300.00698 * 13 12 11 39 39 H 1.09001 * 109.47062 * 95.18221 * 15 14 13 40 40 H 1.08999 * 109.46641 * 215.18275 * 15 14 13 41 41 H 1.08997 * 109.46731 * 335.18464 * 15 14 13 42 42 H 1.08998 * 110.81778 * 263.50360 * 20 18 16 43 43 H 1.08997 * 110.81929 * 27.05715 * 20 18 16 44 44 H 1.08998 * 110.33364 * 214.78791 * 21 20 18 45 45 H 1.09005 * 110.29977 * 92.71412 * 21 20 18 46 46 H 1.07998 * 119.89888 * 0.02562 * 23 22 21 47 47 H 1.07998 * 120.04151 * 180.02562 * 26 24 23 48 48 H 1.07996 * 119.87784 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1550 1.2290 -0.3924 5 6 1.5517 2.3326 0.5043 6 7 0.4110 2.2480 1.1554 7 14 2.3660 3.9958 0.2589 8 1 3.6302 3.8208 -0.5001 9 1 1.4525 4.8869 -0.5005 10 1 2.6621 4.6020 1.5818 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4438 14 7 3.4627 -3.4566 -2.8251 15 6 2.4865 -4.3024 -3.5165 16 6 4.5858 -3.0667 -3.4600 17 8 5.3512 -2.2961 -2.9202 18 6 4.8906 -3.5882 -4.8407 19 1 3.9666 -3.8339 -5.3640 20 6 5.6982 -2.5445 -5.6412 21 6 6.6316 -3.4329 -6.4934 22 6 6.7866 -4.7164 -5.7061 23 6 7.7286 -5.7256 -5.8127 24 6 7.6709 -6.8227 -4.9722 25 9 8.5917 -7.8057 -5.0782 26 6 6.6682 -6.9112 -4.0212 27 6 5.7292 -5.9048 -3.9152 28 6 5.7861 -4.8057 -4.7563 29 1 -0.3632 -0.0756 1.0249 30 1 -0.3633 0.9255 -0.4469 31 1 -0.3633 -0.8497 -0.5779 32 1 -0.0071 3.0494 1.5075 33 1 1.6085 -2.0285 0.5130 34 1 3.1500 -1.1386 0.5133 35 1 3.0416 -0.9499 -1.9568 36 1 1.5000 -1.8399 -1.9571 37 1 2.6293 -3.7946 -0.9302 38 1 4.1704 -2.9039 -0.9300 39 1 1.8153 -3.6765 -4.1045 40 1 3.0088 -4.9951 -4.1764 41 1 1.9091 -4.8649 -2.7828 42 1 5.0411 -1.9498 -6.2756 43 1 6.2757 -1.9059 -4.9728 44 1 7.5999 -2.9496 -6.6234 45 1 6.1780 -3.6366 -7.4635 46 1 8.5106 -5.6560 -6.5543 47 1 6.6209 -7.7664 -3.3633 48 1 4.9477 -5.9741 -3.1730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733775068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:16 Heat of formation + Delta-G solvation = -51.677092 kcal Electronic energy + Delta-G solvation = -28538.141634 eV Core-core repulsion = 24507.245714 eV Total energy + Delta-G solvation = -4030.895920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.94242 -41.87598 -40.10922 -37.95938 -36.79659 -36.24606 -34.17395 -32.79089 -31.82938 -29.83778 -29.04953 -28.05893 -27.84750 -26.55774 -24.17804 -23.98865 -22.48718 -22.13881 -21.88033 -19.93820 -18.77864 -18.36124 -18.14628 -17.64623 -17.16983 -17.07747 -16.70967 -16.60236 -15.97403 -15.89877 -15.55231 -15.34956 -14.87854 -14.66065 -14.59968 -14.48080 -14.10972 -13.98074 -13.93470 -13.57124 -13.35255 -13.22357 -12.98370 -12.86343 -12.75960 -12.66512 -12.58419 -12.50398 -12.42837 -12.22158 -12.09596 -11.91997 -11.89595 -11.70371 -11.40572 -10.92877 -10.65028 -9.96156 -9.69238 -9.48309 -8.73444 -7.87723 -5.35805 0.03463 0.18664 1.42108 1.42977 1.54474 1.55576 2.02464 2.48161 2.51039 3.03722 3.26898 3.32000 3.47553 3.61626 3.70729 3.90580 3.90808 4.08305 4.10938 4.17888 4.26924 4.32390 4.40484 4.53685 4.57126 4.60107 4.62094 4.71695 4.73031 4.74925 4.85827 4.88856 4.92346 4.96389 5.01889 5.05632 5.09493 5.20684 5.25397 5.27387 5.29300 5.46476 5.51918 5.58054 5.61557 5.68671 5.83550 6.33541 6.40303 7.14300 7.17071 7.86734 8.29170 9.17062 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002311 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.496956 B =12114.015378 C =12766.467828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.260 4.260 4 H 0.057 0.943 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.288 1.288 11 C 0.152 3.848 12 C -0.128 4.128 13 C 0.125 3.875 14 N -0.612 5.612 15 C 0.067 3.933 16 C 0.513 3.487 17 O -0.581 6.581 18 C -0.062 4.062 19 H 0.137 0.863 20 C -0.114 4.114 21 C -0.074 4.074 22 C -0.065 4.065 23 C -0.146 4.146 24 C 0.086 3.914 25 F -0.145 7.145 26 C -0.155 4.155 27 C -0.077 4.077 28 C -0.106 4.106 29 H -0.004 1.004 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.250 0.750 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -22.382 -18.287 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.347 5.347 3 C -0.390 4.390 4 H 0.075 0.925 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.214 1.214 11 C 0.025 3.975 12 C -0.169 4.169 13 C 0.002 3.998 14 N -0.344 5.344 15 C -0.075 4.075 16 C 0.301 3.699 17 O -0.461 6.461 18 C -0.083 4.083 19 H 0.154 0.846 20 C -0.151 4.151 21 C -0.111 4.111 22 C -0.065 4.065 23 C -0.165 4.165 24 C 0.067 3.933 25 F -0.124 7.124 26 C -0.174 4.174 27 C -0.095 4.095 28 C -0.107 4.107 29 H 0.014 0.986 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.169 0.831 47 H 0.172 0.828 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.920 -21.918 -17.924 29.686 hybrid contribution 0.425 1.083 0.445 1.246 sum 9.345 -20.835 -17.478 28.756 Atomic orbital electron populations 1.20529 0.82557 0.97123 0.96526 1.44162 1.02327 1.01732 1.86498 1.19433 0.98968 0.87582 1.33048 0.92518 1.25802 0.98640 1.01965 0.98393 1.70209 1.19897 1.27975 1.40451 0.85198 0.77974 0.80047 0.77229 1.19812 1.21200 1.21431 1.20799 0.95226 0.87119 0.94326 1.22248 0.99268 0.96351 0.99034 1.21424 1.00133 0.96077 0.82211 1.48045 1.20865 1.51046 1.14404 1.22172 0.92063 0.94435 0.98814 1.21015 0.80509 0.79990 0.88366 1.90704 1.50090 1.36587 1.68698 1.20943 1.00983 0.93779 0.92598 0.84585 1.22410 0.98138 0.96653 0.97938 1.21153 1.01212 0.90135 0.98575 1.20605 0.93328 0.96127 0.96436 1.20715 1.01345 0.93032 1.01411 1.17731 0.89509 0.87252 0.98788 1.91491 1.64758 1.60546 1.95592 1.21220 0.94993 1.01503 0.99635 1.20667 0.98877 0.91916 0.98081 1.20300 0.97475 0.95080 0.97852 0.98577 0.95304 0.95316 0.94095 0.92199 0.94939 0.95840 0.92183 0.87304 0.92319 0.91748 0.89111 0.88575 0.88007 0.91919 0.89155 0.86825 0.83121 0.82773 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.97 8.99 127.77 1.15 10.12 16 2 N -0.62 -32.83 2.92 -726.96 -2.12 -34.96 16 3 C -0.26 -15.19 9.65 84.03 0.81 -14.38 16 4 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 5 C -0.05 -3.12 5.10 84.86 0.43 -2.68 16 6 N -0.94 -57.09 10.70 21.65 0.23 -56.85 16 7 Si 0.97 47.20 29.56 68.60 2.03 49.23 16 8 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 11 C 0.15 6.34 5.69 86.38 0.49 6.83 16 12 C -0.13 -4.53 5.86 30.59 0.18 -4.36 16 13 C 0.12 3.35 5.41 86.38 0.47 3.82 16 14 N -0.61 -13.82 2.87 -846.73 -2.43 -16.25 16 15 C 0.07 0.83 9.86 127.77 1.26 2.09 16 16 C 0.51 13.73 6.58 87.66 0.58 14.31 16 17 O -0.58 -21.96 15.40 -3.04 -0.05 -22.00 16 18 C -0.06 -1.13 2.40 -11.61 -0.03 -1.16 16 19 H 0.14 1.64 6.46 -2.39 -0.02 1.63 16 20 C -0.11 -2.02 6.54 31.56 0.21 -1.82 16 21 C -0.07 -0.95 6.77 30.57 0.21 -0.75 16 22 C -0.06 -1.07 6.14 -19.60 -0.12 -1.19 16 23 C -0.15 -2.37 10.02 22.34 0.22 -2.15 16 24 C 0.09 1.54 7.30 22.35 0.16 1.70 16 25 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 26 C -0.15 -2.49 10.03 22.28 0.22 -2.27 16 27 C -0.08 -1.28 9.68 22.29 0.22 -1.06 16 28 C -0.11 -1.90 5.54 -19.58 -0.11 -2.01 16 29 H 0.00 -0.22 7.83 -2.39 -0.02 -0.24 16 30 H 0.03 1.58 6.74 -2.39 -0.02 1.57 16 31 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 35 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.11 2.16 7.86 -2.38 -0.02 2.14 16 38 H 0.06 1.85 7.49 -2.39 -0.02 1.83 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.74 6.42 -2.39 -0.02 0.73 16 41 H 0.10 0.87 7.83 -2.39 -0.02 0.85 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.56 6.98 -2.39 -0.02 1.54 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.14 1.94 8.03 -2.91 -0.02 1.92 16 Total: -1.00 -77.27 392.59 5.73 -71.54 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.94 Total: 6.25 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.35 Total: 5.05 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.32 Total: -108.06 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -77.27 5.73 -71.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733775068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.861 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds