Wall clock time and date at job start Tue Mar 31 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47473 * 2 1 4 4 N 1.46501 * 109.46874 * 119.99799 * 2 1 3 5 5 C 1.36938 * 120.00209 * 274.99572 * 4 2 1 6 6 H 1.08000 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99957 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99894 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47353 * 90.00095 * 9 7 5 11 11 H 1.48498 * 109.46758 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47150 * 329.99939 * 9 7 5 13 13 C 1.52996 * 109.46948 * 239.99721 * 2 1 3 14 14 H 1.09000 * 109.47504 * 300.00015 * 13 2 1 15 15 C 1.53005 * 109.47222 * 180.02562 * 13 2 1 16 16 N 1.46501 * 109.47270 * 60.00320 * 13 2 1 17 17 C 1.34781 * 120.00064 * 205.27382 * 16 13 2 18 18 O 1.21281 * 119.99901 * 354.78465 * 17 16 13 19 19 C 1.50700 * 120.00052 * 174.78176 * 17 16 13 20 20 C 1.50697 * 112.84868 * 304.60792 * 19 17 16 21 21 C 1.38221 * 120.01505 * 114.42684 * 20 19 17 22 22 C 1.38221 * 120.02480 * 179.72205 * 21 20 19 23 23 C 1.38272 * 120.05383 * 0.54617 * 22 21 20 24 24 C 1.38180 * 120.02153 * 359.72945 * 23 22 21 25 25 C 1.38435 * 120.01176 * 294.69704 * 20 19 17 26 26 F 1.35105 * 120.02792 * 0.02703 * 25 20 19 27 27 C 1.53772 * 113.61429 * 173.40938 * 19 17 16 28 28 C 1.54057 * 86.98606 * 270.84035 * 27 19 17 29 29 C 1.53781 * 113.61237 * 75.79995 * 19 17 16 30 30 H 1.08992 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46637 * 300.00503 * 1 2 3 32 32 H 1.08998 * 109.46628 * 59.99792 * 1 2 3 33 33 H 0.97006 * 119.99936 * 95.00036 * 4 2 1 34 34 H 0.97004 * 119.99681 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47148 * 59.99643 * 15 13 2 36 36 H 1.09000 * 109.47405 * 179.97438 * 15 13 2 37 37 H 1.09000 * 109.46682 * 300.00260 * 15 13 2 38 38 H 0.96997 * 120.00091 * 24.99715 * 16 13 2 39 39 H 1.08002 * 119.98818 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.97686 * 180.28028 * 22 21 20 41 41 H 1.07994 * 119.98915 * 179.74678 * 23 22 21 42 42 H 1.07995 * 120.01137 * 180.02562 * 24 23 22 43 43 H 1.08999 * 113.61585 * 25.43366 * 27 19 17 44 44 H 1.09002 * 113.61650 * 156.33863 * 27 19 17 45 45 H 1.09003 * 113.61788 * 220.02684 * 28 27 19 46 46 H 1.08995 * 113.61288 * 89.11186 * 28 27 19 47 47 H 1.09004 * 113.61268 * 203.66687 * 29 19 17 48 48 H 1.09003 * 113.61885 * 334.56775 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8920 1.0404 2.4243 7 6 2.6123 -0.6616 3.5091 8 7 2.7376 -0.0051 4.6429 9 14 3.0578 -2.4738 3.4249 10 1 4.4905 -2.6150 3.0610 11 1 2.8186 -3.1042 4.7480 12 1 2.2182 -3.1428 2.3988 13 6 2.0400 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2492 15 6 3.5700 -0.7219 -1.2489 16 7 1.5517 -0.0307 -2.4454 17 6 1.4177 -0.7045 -3.6050 18 8 1.7896 -1.8562 -3.6836 19 6 0.8057 -0.0268 -4.8038 20 6 -0.5619 0.5396 -4.5211 21 6 -0.7648 1.9064 -4.5556 22 6 -2.0204 2.4258 -4.3020 23 6 -3.0722 1.5798 -4.0022 24 6 -2.8703 0.2134 -3.9615 25 6 -1.6141 -0.3084 -4.2211 26 9 -1.4156 -1.6442 -4.1811 27 6 0.8695 -0.8706 -6.0878 28 6 2.2398 -0.2179 -6.3516 29 6 1.7517 0.9659 -5.5000 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1527 34 1 3.0616 -0.4622 5.4348 35 1 3.9330 -1.2359 -0.3589 36 1 3.9334 -1.2362 -2.1386 37 1 3.9337 0.3057 -1.2487 38 1 1.3210 0.9104 -2.4019 39 1 0.0570 2.5686 -4.7850 40 1 -2.1791 3.4936 -4.3336 41 1 -4.0518 1.9870 -3.8002 42 1 -3.6920 -0.4473 -3.7278 43 1 0.9237 -1.9434 -5.9030 44 1 0.1104 -0.6046 -6.8233 45 1 2.4079 0.0371 -7.3980 46 1 3.0745 -0.7603 -5.9076 47 1 1.2332 1.7331 -6.0750 48 1 2.5176 1.3748 -4.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734001530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:27 Heat of formation + Delta-G solvation = -23.493591 kcal Electronic energy + Delta-G solvation = -30158.446615 eV Core-core repulsion = 26128.772823 eV Total energy + Delta-G solvation = -4029.673792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.97073 -41.11038 -39.00880 -37.85810 -36.48666 -34.04128 -31.99686 -31.50345 -30.79379 -29.75807 -28.88538 -26.44928 -26.04322 -23.90867 -23.14544 -22.83858 -22.09205 -21.14781 -20.23642 -19.07178 -18.05102 -17.76783 -17.10713 -16.51994 -16.07826 -15.88074 -15.60829 -15.24038 -14.77186 -14.44614 -14.36777 -14.31866 -13.96360 -13.53892 -13.35462 -13.34781 -12.92218 -12.76812 -12.59981 -12.49967 -12.33563 -12.16583 -12.00803 -11.84045 -11.59404 -11.35046 -11.17318 -11.09253 -10.90557 -10.77437 -10.76964 -10.53548 -10.29817 -9.96822 -9.84728 -9.60123 -9.19967 -9.04696 -8.86037 -8.78858 -7.30768 -5.78997 -3.15129 0.85519 0.92255 2.63708 3.14924 3.32853 3.38444 3.42502 3.46365 3.98715 4.17399 4.24744 4.34485 4.54050 4.56435 4.58388 4.65363 4.75434 4.98912 5.03250 5.12751 5.25120 5.37823 5.39835 5.43199 5.43974 5.54778 5.63466 5.64693 5.71879 5.77141 5.79694 5.85535 5.93991 5.99884 6.01516 6.09818 6.10843 6.14726 6.26960 6.30268 6.40873 6.53684 6.60365 6.68038 6.82251 6.93888 7.63506 7.95377 8.31997 8.39602 9.17132 9.89891 10.09042 11.39098 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.889603 B = 7872.656690 C = 8713.631977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.134 3.866 14 H 0.082 0.918 15 C -0.153 4.153 16 N -0.711 5.711 17 C 0.542 3.458 18 O -0.530 6.530 19 C -0.068 4.068 20 C -0.104 4.104 21 C -0.087 4.087 22 C -0.128 4.128 23 C -0.090 4.090 24 C -0.153 4.153 25 C 0.112 3.888 26 F -0.130 7.130 27 C -0.111 4.111 28 C -0.139 4.139 29 C -0.122 4.122 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 5.675 -25.198 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.077 0.923 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.188 4.188 8 N -0.581 5.581 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.029 3.971 14 H 0.100 0.900 15 C -0.212 4.212 16 N -0.361 5.361 17 C 0.326 3.674 18 O -0.406 6.406 19 C -0.072 4.072 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.147 4.147 23 C -0.108 4.108 24 C -0.172 4.172 25 C 0.093 3.907 26 F -0.109 7.109 27 C -0.149 4.149 28 C -0.176 4.176 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.232 0.768 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.114 0.886 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.246 4.943 -25.021 26.805 hybrid contribution 0.030 -1.081 0.318 1.127 sum -8.216 3.862 -24.703 26.319 Atomic orbital electron populations 1.22395 0.98560 1.01066 1.00288 1.20344 0.92252 0.95808 0.85120 0.92296 1.42658 1.79861 1.09349 1.06698 1.19011 1.37152 0.95504 0.85513 0.89153 1.24629 1.01284 0.97399 0.95507 1.69695 1.52484 1.35607 1.00276 0.86616 0.78603 0.86825 0.76932 1.20949 1.21700 1.20231 1.21355 0.94495 0.97409 0.83841 0.90007 1.22057 0.94919 1.02115 1.02074 1.45922 1.66779 1.13848 1.09559 1.19574 0.78205 0.86307 0.83279 1.90687 1.49173 1.17252 1.83449 1.20903 0.92231 0.99189 0.94847 1.19500 0.93454 0.93777 1.03769 1.20982 0.97800 0.93215 0.98480 1.21199 0.92672 1.00311 1.00481 1.21048 0.99638 0.92288 0.97862 1.21189 0.95951 0.96711 1.03333 1.17604 0.94130 0.77643 1.01372 1.91560 1.95687 1.29988 1.93634 1.22881 0.97466 1.00871 0.93633 1.22871 0.97649 0.96813 1.00263 1.23023 0.97862 0.96513 0.98599 0.93624 0.92178 0.94351 0.80476 0.93026 0.90831 0.93098 0.92595 0.76810 0.84632 0.85152 0.85017 0.84713 0.89476 0.89552 0.90844 0.89571 0.88616 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.33 37.16 0.35 -2.54 16 2 C 0.17 3.27 2.52 -67.93 -0.17 3.10 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 N -0.74 -17.20 4.23 -53.42 -0.23 -17.43 16 5 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 8 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 9 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 13 C 0.13 2.24 2.17 -67.93 -0.15 2.09 16 14 H 0.08 1.55 7.65 -51.93 -0.40 1.15 16 15 C -0.15 -2.54 9.33 37.16 0.35 -2.19 16 16 N -0.71 -9.83 4.28 -53.80 -0.23 -10.06 16 17 C 0.54 7.80 6.04 -10.98 -0.07 7.74 16 18 O -0.53 -9.57 15.57 5.56 0.09 -9.49 16 19 C -0.07 -0.74 0.68 -156.01 -0.11 -0.85 16 20 C -0.10 -1.06 4.72 -104.56 -0.49 -1.56 16 21 C -0.09 -0.68 9.05 -39.59 -0.36 -1.04 16 22 C -0.13 -0.92 10.04 -39.58 -0.40 -1.31 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 24 C -0.15 -1.48 10.03 -39.51 -0.40 -1.87 16 25 C 0.11 1.32 7.04 -39.42 -0.28 1.04 16 26 F -0.13 -1.87 16.24 2.25 0.04 -1.84 16 27 C -0.11 -1.16 6.69 -25.78 -0.17 -1.33 16 28 C -0.14 -1.25 7.81 -25.77 -0.20 -1.45 16 29 C -0.12 -0.99 6.32 -25.92 -0.16 -1.15 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.57 7.44 -51.93 -0.39 0.19 16 33 H 0.36 8.46 5.44 -40.82 -0.22 8.24 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 36 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.40 4.66 8.32 -40.82 -0.34 4.32 16 39 H 0.14 0.77 6.40 -52.49 -0.34 0.43 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.09 1.11 7.37 -51.93 -0.38 0.73 16 44 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.57 6.78 -51.93 -0.35 0.22 16 48 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -33.22 390.98 -8.75 -41.97 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.46 Total: 10.85 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.91 Total: -9.12 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.32 Total: -55.73 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.22 -8.75 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734001530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.476 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds