Wall clock time and date at job start Tue Mar 31 2020 17:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47473 * 2 1 4 4 N 1.46501 * 109.46874 * 119.99799 * 2 1 3 5 5 C 1.36938 * 120.00209 * 274.99572 * 4 2 1 6 6 H 1.08000 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99957 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99894 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47353 * 90.00095 * 9 7 5 11 11 H 1.48498 * 109.46758 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47150 * 329.99939 * 9 7 5 13 13 C 1.52996 * 109.46948 * 239.99721 * 2 1 3 14 14 H 1.09000 * 109.47504 * 300.00015 * 13 2 1 15 15 C 1.53005 * 109.47222 * 180.02562 * 13 2 1 16 16 N 1.46501 * 109.47270 * 60.00320 * 13 2 1 17 17 C 1.34781 * 120.00064 * 205.27382 * 16 13 2 18 18 O 1.21281 * 119.99901 * 354.78465 * 17 16 13 19 19 C 1.50700 * 120.00052 * 174.78176 * 17 16 13 20 20 C 1.50697 * 112.84868 * 304.60792 * 19 17 16 21 21 C 1.38221 * 120.01505 * 114.42684 * 20 19 17 22 22 C 1.38221 * 120.02480 * 179.72205 * 21 20 19 23 23 C 1.38272 * 120.05383 * 0.54617 * 22 21 20 24 24 C 1.38180 * 120.02153 * 359.72945 * 23 22 21 25 25 C 1.38435 * 120.01176 * 294.69704 * 20 19 17 26 26 F 1.35105 * 120.02792 * 0.02703 * 25 20 19 27 27 C 1.53772 * 113.61429 * 173.40938 * 19 17 16 28 28 C 1.54057 * 86.98606 * 270.84035 * 27 19 17 29 29 C 1.53781 * 113.61237 * 75.79995 * 19 17 16 30 30 H 1.08992 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46637 * 300.00503 * 1 2 3 32 32 H 1.08998 * 109.46628 * 59.99792 * 1 2 3 33 33 H 0.97006 * 119.99936 * 95.00036 * 4 2 1 34 34 H 0.97004 * 119.99681 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47148 * 59.99643 * 15 13 2 36 36 H 1.09000 * 109.47405 * 179.97438 * 15 13 2 37 37 H 1.09000 * 109.46682 * 300.00260 * 15 13 2 38 38 H 0.96997 * 120.00091 * 24.99715 * 16 13 2 39 39 H 1.08002 * 119.98818 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.97686 * 180.28028 * 22 21 20 41 41 H 1.07994 * 119.98915 * 179.74678 * 23 22 21 42 42 H 1.07995 * 120.01137 * 180.02562 * 24 23 22 43 43 H 1.08999 * 113.61585 * 25.43366 * 27 19 17 44 44 H 1.09002 * 113.61650 * 156.33863 * 27 19 17 45 45 H 1.09003 * 113.61788 * 220.02684 * 28 27 19 46 46 H 1.08995 * 113.61288 * 89.11186 * 28 27 19 47 47 H 1.09004 * 113.61268 * 203.66687 * 29 19 17 48 48 H 1.09003 * 113.61885 * 334.56775 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8920 1.0404 2.4243 7 6 2.6123 -0.6616 3.5091 8 7 2.7376 -0.0051 4.6429 9 14 3.0578 -2.4738 3.4249 10 1 4.4905 -2.6150 3.0610 11 1 2.8186 -3.1042 4.7480 12 1 2.2182 -3.1428 2.3988 13 6 2.0400 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2492 15 6 3.5700 -0.7219 -1.2489 16 7 1.5517 -0.0307 -2.4454 17 6 1.4177 -0.7045 -3.6050 18 8 1.7896 -1.8562 -3.6836 19 6 0.8057 -0.0268 -4.8038 20 6 -0.5619 0.5396 -4.5211 21 6 -0.7648 1.9064 -4.5556 22 6 -2.0204 2.4258 -4.3020 23 6 -3.0722 1.5798 -4.0022 24 6 -2.8703 0.2134 -3.9615 25 6 -1.6141 -0.3084 -4.2211 26 9 -1.4156 -1.6442 -4.1811 27 6 0.8695 -0.8706 -6.0878 28 6 2.2398 -0.2179 -6.3516 29 6 1.7517 0.9659 -5.5000 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1527 34 1 3.0616 -0.4622 5.4348 35 1 3.9330 -1.2359 -0.3589 36 1 3.9334 -1.2362 -2.1386 37 1 3.9337 0.3057 -1.2487 38 1 1.3210 0.9104 -2.4019 39 1 0.0570 2.5686 -4.7850 40 1 -2.1791 3.4936 -4.3336 41 1 -4.0518 1.9870 -3.8002 42 1 -3.6920 -0.4473 -3.7278 43 1 0.9237 -1.9434 -5.9030 44 1 0.1104 -0.6046 -6.8233 45 1 2.4079 0.0371 -7.3980 46 1 3.0745 -0.7603 -5.9076 47 1 1.2332 1.7331 -6.0750 48 1 2.5176 1.3748 -4.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734001530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:26 Heat of formation + Delta-G solvation = -43.466927 kcal Electronic energy + Delta-G solvation = -30159.312724 eV Core-core repulsion = 26128.772823 eV Total energy + Delta-G solvation = -4030.539901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.88940 -42.04058 -39.93170 -38.90162 -37.79344 -35.69053 -33.74953 -32.40285 -31.49313 -31.18466 -30.54164 -27.26536 -26.79314 -25.74472 -24.46814 -23.53128 -22.99410 -22.24253 -21.72968 -20.27981 -19.65637 -18.79796 -17.99580 -17.37055 -17.23877 -16.87236 -16.56940 -16.39336 -16.16930 -15.78144 -15.58775 -15.39875 -15.02574 -14.80584 -14.72320 -14.38213 -14.27664 -14.19215 -13.86509 -13.48518 -13.31427 -13.23918 -13.12581 -12.99573 -12.82498 -12.70996 -12.64476 -12.36205 -12.22827 -12.13922 -11.95178 -11.82131 -11.57118 -11.45863 -11.28439 -11.06091 -10.91933 -10.15773 -9.87508 -9.57030 -9.35043 -8.02601 -5.35676 0.18021 0.27959 1.37629 1.37942 1.44650 1.54049 2.04265 2.46849 2.65589 3.27600 3.29483 3.41589 3.50880 3.55822 3.61664 3.66077 3.81102 3.84595 3.98798 4.11591 4.19180 4.24587 4.37550 4.44075 4.49761 4.52638 4.68973 4.72484 4.78894 4.80894 4.87006 4.94813 4.95792 5.00398 5.03628 5.09781 5.11021 5.14455 5.24334 5.26748 5.37587 5.41051 5.44041 5.48114 5.51397 5.77241 5.97511 6.20871 6.52023 7.05388 7.20634 7.80842 7.98908 9.18560 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.889603 B = 7872.656690 C = 8713.631977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 H 0.066 0.934 4 N -0.746 5.746 5 C -0.220 4.220 6 H 0.067 0.933 7 C -0.055 4.055 8 N -0.980 5.980 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.262 1.262 13 C 0.147 3.853 14 H 0.058 0.942 15 C -0.147 4.147 16 N -0.700 5.700 17 C 0.540 3.460 18 O -0.573 6.573 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.082 4.082 22 C -0.121 4.121 23 C -0.089 4.089 24 C -0.165 4.165 25 C 0.073 3.927 26 F -0.158 7.158 27 C -0.115 4.115 28 C -0.137 4.137 29 C -0.106 4.106 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.362 0.638 34 H 0.257 0.743 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.129 0.871 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 7.976 -27.638 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.066 3.934 3 H 0.084 0.916 4 N -0.389 5.389 5 C -0.351 4.351 6 H 0.085 0.915 7 C -0.247 4.247 8 N -0.631 5.631 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.187 1.187 13 C 0.041 3.959 14 H 0.077 0.923 15 C -0.205 4.205 16 N -0.352 5.352 17 C 0.326 3.674 18 O -0.452 6.452 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.184 4.184 25 C 0.054 3.946 26 F -0.137 7.137 27 C -0.153 4.153 28 C -0.174 4.174 29 C -0.143 4.143 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.195 0.805 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.147 0.853 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.920 7.271 -27.524 29.833 hybrid contribution 0.125 -1.705 0.995 1.978 sum -8.795 5.567 -26.529 28.498 Atomic orbital electron populations 1.22240 0.97420 1.00555 1.00959 1.20498 0.92813 0.95846 0.84277 0.91606 1.42677 1.80029 1.09369 1.06857 1.18979 1.34744 0.94588 0.86809 0.91548 1.25305 1.02522 1.01544 0.95336 1.69846 1.54751 1.37401 1.01087 0.85622 0.78679 0.81973 0.76797 1.20348 1.22330 1.18687 1.20954 0.94585 0.96159 0.84176 0.92340 1.21979 0.94609 1.02668 1.01252 1.45730 1.66521 1.14352 1.08564 1.20255 0.77213 0.85834 0.84078 1.90668 1.50980 1.19332 1.84248 1.20837 0.93271 1.00124 0.93023 1.19529 0.92374 0.94712 1.04725 1.21330 0.99142 0.92181 0.97282 1.21633 0.91918 1.01849 0.98428 1.21420 1.01217 0.91343 0.96705 1.21380 0.95360 0.97996 1.03668 1.18075 0.95772 0.76834 1.03898 1.91488 1.95935 1.32071 1.94180 1.22915 0.99150 0.98950 0.94244 1.22837 0.95852 0.96884 1.01840 1.23091 0.97091 0.96180 0.97988 0.94739 0.93753 0.91327 0.80493 0.93388 0.92576 0.92970 0.91294 0.75171 0.81739 0.81938 0.82540 0.84560 0.92902 0.87885 0.88427 0.91856 0.85301 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.33 71.98 0.67 -4.55 16 2 C 0.17 6.35 2.52 44.99 0.11 6.47 16 3 H 0.07 2.35 8.08 -2.38 -0.02 2.33 16 4 N -0.75 -34.30 4.23 -322.93 -1.37 -35.66 16 5 C -0.22 -12.19 10.41 84.03 0.87 -11.32 16 6 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 7 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 8 N -0.98 -62.14 13.97 21.65 0.30 -61.84 16 9 Si 0.94 46.22 27.74 68.60 1.90 48.12 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 12 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 13 C 0.15 4.84 2.17 44.99 0.10 4.94 16 14 H 0.06 2.24 7.65 -2.39 -0.02 2.22 16 15 C -0.15 -4.76 9.33 71.98 0.67 -4.09 16 16 N -0.70 -18.42 4.28 -442.52 -1.90 -20.32 16 17 C 0.54 15.31 6.04 87.66 0.53 15.84 16 18 O -0.57 -21.38 15.57 -3.03 -0.05 -21.43 16 19 C -0.07 -1.39 0.68 -53.15 -0.04 -1.43 16 20 C -0.11 -2.05 4.72 -19.82 -0.09 -2.14 16 21 C -0.08 -0.92 9.05 22.26 0.20 -0.72 16 22 C -0.12 -1.15 10.04 22.27 0.22 -0.92 16 23 C -0.09 -1.07 10.04 22.26 0.22 -0.85 16 24 C -0.17 -2.98 10.03 22.31 0.22 -2.75 16 25 C 0.07 1.68 7.04 22.38 0.16 1.83 16 26 F -0.16 -4.76 16.24 44.97 0.73 -4.03 16 27 C -0.11 -2.34 6.69 31.21 0.21 -2.14 16 28 C -0.14 -2.22 7.81 31.22 0.24 -1.97 16 29 C -0.11 -1.35 6.32 31.12 0.20 -1.15 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 33 H 0.36 16.71 5.44 -92.70 -0.50 16.21 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.06 2.01 7.44 -2.39 -0.02 1.99 16 36 H 0.05 1.67 8.12 -2.39 -0.02 1.65 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 8.53 8.32 -92.71 -0.77 7.76 16 39 H 0.17 0.86 6.40 -2.91 -0.02 0.84 16 40 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.05 1.44 7.37 -2.39 -0.02 1.42 16 44 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 45 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.13 0.83 6.78 -2.39 -0.02 0.81 16 48 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -75.53 390.98 4.24 -71.29 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.36 Total: 31.59 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.98 Total: -7.72 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -2.96 Total: -117.83 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.73 Total: -4.03 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -75.53 4.24 -71.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734001530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.821 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds