Wall clock time and date at job start Tue Mar 31 2020 18:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 109.46710 * 2 1 4 4 C 1.36933 * 120.00366 * 275.61705 * 3 2 1 5 5 H 1.07999 * 119.99813 * 38.92781 * 4 3 2 6 6 C 1.38812 * 120.00416 * 218.92697 * 4 3 2 7 7 N 1.31619 * 119.99627 * 17.10353 * 6 4 3 8 8 Si 1.86803 * 120.00276 * 197.10538 * 6 4 3 9 9 H 1.48496 * 109.46890 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46978 * 119.99920 * 8 6 4 11 11 H 1.48501 * 109.46910 * 239.99830 * 8 6 4 12 12 C 1.46509 * 119.99884 * 95.62052 * 3 2 1 13 13 C 1.53002 * 109.47081 * 269.99861 * 12 3 2 14 14 C 1.52999 * 109.46849 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46642 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99805 * 179.97438 * 15 14 13 17 17 O 1.21278 * 120.00275 * 5.34535 * 16 15 14 18 18 C 1.50705 * 119.99990 * 185.34686 * 16 15 14 19 19 C 1.50701 * 115.55046 * 65.11077 * 18 16 15 20 20 C 1.38264 * 119.98946 * 32.32270 * 19 18 16 21 21 C 1.38222 * 120.05456 * 179.72660 * 20 19 18 22 22 C 1.38217 * 120.02081 * 0.29661 * 21 20 19 23 23 C 1.38434 * 119.97888 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.03221 * 180.02562 * 23 22 21 25 25 C 1.38174 * 119.98389 * 212.60698 * 19 18 16 26 26 C 1.53000 * 117.49666 * 210.77758 * 18 16 15 27 27 C 1.52997 * 117.49684 * 279.43891 * 18 16 15 28 28 H 1.09002 * 109.46928 * 299.99933 * 1 2 3 29 29 H 1.08992 * 109.47306 * 59.99575 * 1 2 3 30 30 H 1.09001 * 109.46602 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46992 * 240.00757 * 2 1 3 32 32 H 1.08998 * 109.47108 * 119.99740 * 2 1 3 33 33 H 0.97006 * 119.99917 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47261 * 149.99518 * 12 3 2 35 35 H 1.09002 * 109.46755 * 29.99466 * 12 3 2 36 36 H 1.09005 * 109.46786 * 59.99869 * 13 12 3 37 37 H 1.09003 * 109.47147 * 300.00224 * 13 12 3 38 38 H 1.08993 * 109.47031 * 60.00556 * 14 13 12 39 39 H 1.08996 * 109.47209 * 300.00037 * 14 13 12 40 40 H 0.97000 * 120.00481 * 0.02562 * 15 14 13 41 41 H 1.08007 * 119.97373 * 0.02562 * 20 19 18 42 42 H 1.07998 * 119.98815 * 180.28237 * 21 20 19 43 43 H 1.08000 * 120.01101 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.01826 * 359.97438 * 25 19 18 45 45 H 1.09001 * 117.50211 * 215.00087 * 26 18 16 46 46 H 1.09000 * 117.50137 * 0.02562 * 26 18 16 47 47 H 1.08999 * 117.50401 * 359.97438 * 27 18 16 48 48 H 1.08995 * 117.49891 * 144.97765 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1371 2.0655 -1.1801 5 1 1.3889 1.9481 -1.9501 6 6 3.2191 2.9102 -1.3869 7 7 4.2874 2.8097 -0.6248 8 14 3.1588 4.1895 -2.7468 9 1 1.8569 4.0980 -3.4552 10 1 3.3086 5.5448 -2.1584 11 1 4.2634 3.9424 -3.7081 12 6 2.3796 2.0305 1.2627 13 6 1.1518 2.7350 1.8435 14 6 1.5290 3.4124 3.1625 15 7 0.3536 4.0874 3.7183 16 6 0.4490 4.7555 4.8849 17 8 1.5273 4.8805 5.4257 18 6 -0.7842 5.3472 5.5175 19 6 -1.8210 4.3535 5.9743 20 6 -1.4304 3.1095 6.4344 21 6 -2.3798 2.1990 6.8590 22 6 -3.7213 2.5292 6.8184 23 6 -4.1140 3.7723 6.3528 24 9 -5.4250 4.0964 6.3131 25 6 -3.1618 4.6837 5.9278 26 6 -0.6104 6.6195 6.3493 27 6 -1.2819 6.6886 4.9754 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0434 3.4002 -0.7690 34 1 3.1671 2.7622 1.0828 35 1 2.7355 1.2798 1.9684 36 1 0.3643 2.0031 2.0235 37 1 0.7959 3.4856 1.1378 38 1 2.3166 4.1441 2.9829 39 1 1.8847 2.6615 3.8679 40 1 -0.4936 4.0529 3.2471 41 1 -0.3823 2.8506 6.4665 42 1 -2.0732 1.2293 7.2225 43 1 -4.4630 1.8176 7.1499 44 1 -3.4670 5.6539 5.5645 45 1 -1.2459 6.7379 7.2269 46 1 0.3959 7.0289 6.4387 47 1 -0.7172 7.1433 4.1616 48 1 -2.3592 6.8522 4.9489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752214655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:21 Heat of formation + Delta-G solvation = -19.858834 kcal Electronic energy + Delta-G solvation = -28506.201491 eV Core-core repulsion = 24476.685313 eV Total energy + Delta-G solvation = -4029.516177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.18217 -40.69197 -38.88624 -36.81540 -36.27722 -34.77221 -31.86799 -31.32784 -31.09001 -30.73866 -28.56382 -26.02487 -24.66564 -23.59808 -23.21122 -22.42737 -22.08587 -21.03907 -20.26601 -19.56015 -18.19202 -16.85965 -16.73690 -16.44259 -16.25798 -15.89696 -15.69004 -15.50652 -15.09653 -14.74448 -14.44814 -14.14451 -13.88928 -13.57670 -13.47290 -13.24006 -12.93582 -12.86713 -12.58745 -12.38168 -12.10672 -11.98203 -11.62259 -11.49123 -11.44278 -11.19057 -11.01681 -10.98309 -10.87079 -10.79114 -10.55620 -10.46159 -10.06610 -9.80759 -9.63332 -9.53372 -9.25140 -8.94283 -8.84474 -8.50527 -6.54594 -5.77365 -3.41865 0.78158 0.85695 2.52193 3.08074 3.16317 3.33418 3.42170 3.44065 3.62867 3.87102 4.13771 4.34879 4.45511 4.49654 4.60972 4.66620 4.81645 4.86467 5.01796 5.22902 5.27701 5.31136 5.39606 5.54394 5.59162 5.64453 5.71158 5.75496 5.82174 5.84204 5.97250 5.99536 6.07912 6.13438 6.27846 6.35206 6.42489 6.46548 6.53866 6.58217 6.74772 6.77511 6.90900 7.09470 7.17629 7.61721 7.70408 7.82417 8.26870 8.53759 9.20205 9.81122 10.40217 11.20934 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.002792 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.028193 B =10027.462502 C =10931.849999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.257 4.257 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.149 3.851 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.549 3.451 17 O -0.536 6.536 18 C -0.128 4.128 19 C -0.010 4.010 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.156 4.156 23 C 0.101 3.899 24 F -0.140 7.140 25 C -0.152 4.152 26 C -0.130 4.130 27 C -0.157 4.157 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.400 0.600 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 3.111 15.713 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.022 3.978 13 C -0.186 4.186 14 C -0.003 4.003 15 N -0.366 5.366 16 C 0.334 3.666 17 O -0.413 6.413 18 C -0.131 4.131 19 C -0.011 4.011 20 C -0.134 4.134 21 C -0.101 4.101 22 C -0.175 4.175 23 C 0.082 3.918 24 F -0.118 7.118 25 C -0.171 4.171 26 C -0.168 4.168 27 C -0.194 4.194 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.358 3.242 16.059 21.784 hybrid contribution -0.764 0.668 -0.953 1.392 sum -15.122 3.910 15.107 21.729 Atomic orbital electron populations 1.22369 1.00190 0.98871 1.01092 1.20848 0.91634 0.87433 0.98679 1.43737 1.76030 1.08149 1.02604 1.19038 1.03376 1.21878 0.94459 0.92357 1.25260 0.94399 1.01236 0.97924 1.69925 1.04096 1.38506 1.40666 0.86319 0.77629 0.81610 0.81779 1.20119 1.21446 1.21580 1.20850 0.94497 0.96786 0.85649 1.22542 1.02397 0.99882 0.93822 1.21523 0.87080 0.96043 0.95642 1.46123 1.14642 1.53182 1.22623 1.19189 0.88280 0.78190 0.80977 1.90715 1.28553 1.58783 1.63214 1.20193 0.96071 0.89709 1.07118 1.18551 0.91417 0.93631 0.97477 1.21114 1.00512 0.92972 0.98807 1.21016 0.91672 0.99673 0.97744 1.21184 0.97536 0.95774 1.02984 1.17598 0.77822 0.94675 1.01716 1.91509 1.32923 1.93049 1.94362 1.20974 0.91929 1.00598 1.03562 1.23093 1.03324 0.95562 0.94791 1.23242 1.01789 0.95839 0.98497 0.93826 0.93297 0.94649 0.93937 0.94840 0.93542 0.88305 0.95812 0.93128 0.91747 0.91353 0.92003 0.76574 0.85262 0.84635 0.84652 0.84364 0.87680 0.87091 0.87476 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.21 37.16 0.38 -2.56 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16 3 N -0.58 -14.10 2.43 -173.23 -0.42 -14.52 16 4 C -0.26 -6.85 9.47 -15.06 -0.14 -6.99 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.32 5.05 -17.43 -0.09 0.23 16 7 N -0.89 -25.11 11.30 55.49 0.63 -24.49 16 8 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.15 3.33 5.32 -4.04 -0.02 3.31 16 13 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 14 C 0.12 1.97 5.68 -4.04 -0.02 1.95 16 15 N -0.72 -9.89 5.55 -60.30 -0.33 -10.23 16 16 C 0.55 7.79 5.99 -10.98 -0.07 7.72 16 17 O -0.54 -9.59 16.70 5.56 0.09 -9.50 16 18 C -0.13 -1.37 2.35 -156.81 -0.37 -1.74 16 19 C -0.01 -0.10 5.46 -104.64 -0.57 -0.67 16 20 C -0.12 -1.19 9.32 -39.58 -0.37 -1.55 16 21 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 22 C -0.16 -1.34 10.03 -39.52 -0.40 -1.74 16 23 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 24 F -0.14 -1.43 17.27 2.25 0.04 -1.40 16 25 C -0.15 -1.40 9.36 -39.51 -0.37 -1.77 16 26 C -0.13 -1.21 9.75 -26.69 -0.26 -1.47 16 27 C -0.16 -1.33 9.58 -26.69 -0.26 -1.59 16 28 H 0.04 0.75 6.66 -51.93 -0.35 0.40 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.10 2.54 5.44 -51.93 -0.28 2.26 16 35 H 0.02 0.51 7.86 -51.93 -0.41 0.10 16 36 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.40 4.83 8.48 -40.82 -0.35 4.48 16 41 H 0.13 1.43 7.41 -52.48 -0.39 1.04 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.14 1.04 5.93 -52.49 -0.31 0.73 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.11 1.14 7.99 -51.93 -0.41 0.72 16 47 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.11 0.71 6.08 -51.93 -0.32 0.39 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -30.47 398.87 -9.77 -40.24 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.34 Total: 4.92 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.41 Total: -7.21 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.13 Total: -49.23 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.47 -9.77 -40.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.379 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds