Wall clock time and date at job start Tue Mar 31 2020 18:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 109.46710 * 2 1 4 4 C 1.36933 * 120.00366 * 275.61705 * 3 2 1 5 5 H 1.07999 * 119.99813 * 38.92781 * 4 3 2 6 6 C 1.38812 * 120.00416 * 218.92697 * 4 3 2 7 7 N 1.31619 * 119.99627 * 17.10353 * 6 4 3 8 8 Si 1.86803 * 120.00276 * 197.10538 * 6 4 3 9 9 H 1.48496 * 109.46890 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46978 * 119.99920 * 8 6 4 11 11 H 1.48501 * 109.46910 * 239.99830 * 8 6 4 12 12 C 1.46509 * 119.99884 * 95.62052 * 3 2 1 13 13 C 1.53002 * 109.47081 * 269.99861 * 12 3 2 14 14 C 1.52999 * 109.46849 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46642 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99805 * 179.97438 * 15 14 13 17 17 O 1.21278 * 120.00275 * 5.34535 * 16 15 14 18 18 C 1.50705 * 119.99990 * 185.34686 * 16 15 14 19 19 C 1.50701 * 115.55046 * 65.11077 * 18 16 15 20 20 C 1.38264 * 119.98946 * 32.32270 * 19 18 16 21 21 C 1.38222 * 120.05456 * 179.72660 * 20 19 18 22 22 C 1.38217 * 120.02081 * 0.29661 * 21 20 19 23 23 C 1.38434 * 119.97888 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.03221 * 180.02562 * 23 22 21 25 25 C 1.38174 * 119.98389 * 212.60698 * 19 18 16 26 26 C 1.53000 * 117.49666 * 210.77758 * 18 16 15 27 27 C 1.52997 * 117.49684 * 279.43891 * 18 16 15 28 28 H 1.09002 * 109.46928 * 299.99933 * 1 2 3 29 29 H 1.08992 * 109.47306 * 59.99575 * 1 2 3 30 30 H 1.09001 * 109.46602 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46992 * 240.00757 * 2 1 3 32 32 H 1.08998 * 109.47108 * 119.99740 * 2 1 3 33 33 H 0.97006 * 119.99917 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47261 * 149.99518 * 12 3 2 35 35 H 1.09002 * 109.46755 * 29.99466 * 12 3 2 36 36 H 1.09005 * 109.46786 * 59.99869 * 13 12 3 37 37 H 1.09003 * 109.47147 * 300.00224 * 13 12 3 38 38 H 1.08993 * 109.47031 * 60.00556 * 14 13 12 39 39 H 1.08996 * 109.47209 * 300.00037 * 14 13 12 40 40 H 0.97000 * 120.00481 * 0.02562 * 15 14 13 41 41 H 1.08007 * 119.97373 * 0.02562 * 20 19 18 42 42 H 1.07998 * 119.98815 * 180.28237 * 21 20 19 43 43 H 1.08000 * 120.01101 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.01826 * 359.97438 * 25 19 18 45 45 H 1.09001 * 117.50211 * 215.00087 * 26 18 16 46 46 H 1.09000 * 117.50137 * 0.02562 * 26 18 16 47 47 H 1.08999 * 117.50401 * 359.97438 * 27 18 16 48 48 H 1.08995 * 117.49891 * 144.97765 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1371 2.0655 -1.1801 5 1 1.3889 1.9481 -1.9501 6 6 3.2191 2.9102 -1.3869 7 7 4.2874 2.8097 -0.6248 8 14 3.1588 4.1895 -2.7468 9 1 1.8569 4.0980 -3.4552 10 1 3.3086 5.5448 -2.1584 11 1 4.2634 3.9424 -3.7081 12 6 2.3796 2.0305 1.2627 13 6 1.1518 2.7350 1.8435 14 6 1.5290 3.4124 3.1625 15 7 0.3536 4.0874 3.7183 16 6 0.4490 4.7555 4.8849 17 8 1.5273 4.8805 5.4257 18 6 -0.7842 5.3472 5.5175 19 6 -1.8210 4.3535 5.9743 20 6 -1.4304 3.1095 6.4344 21 6 -2.3798 2.1990 6.8590 22 6 -3.7213 2.5292 6.8184 23 6 -4.1140 3.7723 6.3528 24 9 -5.4250 4.0964 6.3131 25 6 -3.1618 4.6837 5.9278 26 6 -0.6104 6.6195 6.3493 27 6 -1.2819 6.6886 4.9754 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0434 3.4002 -0.7690 34 1 3.1671 2.7622 1.0828 35 1 2.7355 1.2798 1.9684 36 1 0.3643 2.0031 2.0235 37 1 0.7959 3.4856 1.1378 38 1 2.3166 4.1441 2.9829 39 1 1.8847 2.6615 3.8679 40 1 -0.4936 4.0529 3.2471 41 1 -0.3823 2.8506 6.4665 42 1 -2.0732 1.2293 7.2225 43 1 -4.4630 1.8176 7.1499 44 1 -3.4670 5.6539 5.5645 45 1 -1.2459 6.7379 7.2269 46 1 0.3959 7.0289 6.4387 47 1 -0.7172 7.1433 4.1616 48 1 -2.3592 6.8522 4.9489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752214655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:20 Heat of formation + Delta-G solvation = -35.411552 kcal Electronic energy + Delta-G solvation = -28506.875907 eV Core-core repulsion = 24476.685313 eV Total energy + Delta-G solvation = -4030.190594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.90882 -41.62675 -39.81815 -38.23822 -37.42566 -36.17811 -33.80912 -32.75465 -31.77912 -31.50452 -30.24572 -27.49649 -26.04268 -24.94741 -23.92562 -23.30535 -22.96446 -22.49851 -21.99984 -20.65285 -19.06132 -18.62163 -17.65392 -17.23244 -17.12223 -16.98756 -16.92014 -16.59399 -16.51584 -15.97677 -15.68312 -15.49113 -15.13244 -14.85620 -14.66702 -14.21078 -14.20391 -14.08189 -13.79709 -13.59178 -13.25903 -13.14494 -12.86313 -12.77347 -12.74292 -12.64866 -12.58881 -12.31626 -12.17792 -12.12757 -11.94306 -11.73811 -11.63332 -11.45224 -11.24225 -10.92829 -10.51973 -10.15015 -9.93382 -9.64327 -8.51653 -7.78266 -5.47973 0.07718 0.17457 1.42886 1.44362 1.47822 1.57204 2.04349 2.38818 2.50839 2.85943 3.13842 3.26742 3.40389 3.59386 3.67104 3.67900 3.86499 3.96458 4.08623 4.12872 4.16966 4.30590 4.36834 4.44787 4.54413 4.54574 4.65023 4.74123 4.77202 4.88088 4.89198 4.89867 5.00038 5.01315 5.04554 5.08655 5.14343 5.16298 5.29557 5.33641 5.39934 5.43938 5.46916 5.60038 5.69495 5.85699 5.88608 6.48358 6.50672 7.13864 7.20560 7.89268 8.41690 9.15087 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.002792 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.028193 B =10027.462502 C =10931.849999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.150 3.850 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.707 5.707 16 C 0.550 3.450 17 O -0.579 6.579 18 C -0.138 4.138 19 C -0.015 4.015 20 C -0.132 4.132 21 C -0.081 4.081 22 C -0.154 4.154 23 C 0.090 3.910 24 F -0.145 7.145 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.250 0.750 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.114 0.886 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.117 3.122 16.232 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.324 5.324 4 C -0.392 4.392 5 H 0.072 0.928 6 C -0.234 4.234 7 N -0.564 5.564 8 Si 0.784 3.216 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.023 3.977 13 C -0.162 4.162 14 C 0.009 3.991 15 N -0.358 5.358 16 C 0.337 3.663 17 O -0.459 6.459 18 C -0.141 4.141 19 C -0.015 4.015 20 C -0.150 4.150 21 C -0.099 4.099 22 C -0.172 4.172 23 C 0.070 3.930 24 F -0.123 7.123 25 C -0.167 4.167 26 C -0.167 4.167 27 C -0.175 4.175 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.132 0.868 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.143 0.857 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.234 3.239 16.572 24.128 hybrid contribution 0.128 0.576 -1.076 1.227 sum -17.106 3.815 15.496 23.395 Atomic orbital electron populations 1.22167 0.97327 1.00753 1.00751 1.20994 0.93769 0.85722 0.98604 1.43980 1.76461 1.09522 1.02394 1.19230 1.02891 1.21918 0.95145 0.92766 1.25918 0.94220 1.03145 1.00117 1.70069 1.04651 1.39346 1.42353 0.85391 0.77704 0.79122 0.79339 1.19046 1.21693 1.21893 1.20735 0.95316 0.96228 0.85448 1.22161 1.00691 0.99467 0.93858 1.21164 0.87485 0.95459 0.94950 1.45948 1.14215 1.52836 1.22752 1.19761 0.88944 0.77250 0.80385 1.90692 1.30631 1.60319 1.64224 1.20042 0.94984 0.90575 1.08515 1.18468 0.91567 0.93395 0.98109 1.21146 1.00185 0.93779 0.99878 1.21222 0.91416 1.00179 0.97085 1.21434 0.97881 0.95818 1.02113 1.17779 0.77700 0.95250 1.02230 1.91499 1.33228 1.93134 1.94456 1.21067 0.91220 1.01309 1.03071 1.23173 1.03175 0.94266 0.96110 1.23382 1.03235 0.93181 0.97737 0.93120 0.94581 0.91641 0.95291 0.93679 0.94035 0.91796 0.95538 0.91367 0.93099 0.93724 0.91981 0.75227 0.86804 0.82655 0.82703 0.82640 0.85702 0.88575 0.87825 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 10.21 71.98 0.73 -4.26 16 2 C 0.13 5.46 6.44 86.38 0.56 6.02 16 3 N -0.60 -29.08 2.43 -701.97 -1.71 -30.79 16 4 C -0.26 -13.98 9.47 84.03 0.80 -13.18 16 5 H 0.05 2.90 7.89 -2.91 -0.02 2.88 16 6 C -0.04 -2.02 5.05 84.86 0.43 -1.59 16 7 N -0.92 -53.33 11.30 21.65 0.24 -53.09 16 8 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.15 6.77 5.32 86.38 0.46 7.23 16 13 C -0.12 -4.38 5.65 30.59 0.17 -4.21 16 14 C 0.13 4.44 5.68 86.38 0.49 4.93 16 15 N -0.71 -19.26 5.55 -463.07 -2.57 -21.83 16 16 C 0.55 15.56 5.99 87.66 0.52 16.09 16 17 O -0.58 -21.30 16.70 -3.02 -0.05 -21.35 16 18 C -0.14 -2.79 2.35 -53.67 -0.13 -2.92 16 19 C -0.01 -0.27 5.46 -19.87 -0.11 -0.38 16 20 C -0.13 -2.53 9.32 22.27 0.21 -2.33 16 21 C -0.08 -1.23 10.04 22.26 0.22 -1.01 16 22 C -0.15 -2.25 10.03 22.31 0.22 -2.02 16 23 C 0.09 1.50 7.30 22.38 0.16 1.66 16 24 F -0.14 -2.62 17.27 44.97 0.78 -1.84 16 25 C -0.15 -2.34 9.36 22.31 0.21 -2.13 16 26 C -0.13 -2.24 9.75 30.62 0.30 -1.94 16 27 C -0.14 -2.05 9.58 30.62 0.29 -1.75 16 28 H 0.05 1.60 6.66 -2.39 -0.02 1.58 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.04 1.70 7.83 -2.39 -0.02 1.69 16 33 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 34 H 0.06 3.41 5.44 -2.39 -0.01 3.40 16 35 H 0.03 1.15 7.86 -2.39 -0.02 1.13 16 36 H 0.07 2.22 6.66 -2.38 -0.02 2.21 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 9.39 8.48 -92.71 -0.79 8.60 16 41 H 0.11 2.52 7.41 -2.91 -0.02 2.50 16 42 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.16 1.80 5.93 -2.91 -0.02 1.79 16 45 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 1.96 7.99 -2.39 -0.02 1.94 16 47 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.14 1.27 6.08 -2.39 -0.01 1.25 16 Total: -1.00 -66.89 398.87 4.45 -62.44 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.18 Total: 22.14 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.55 Total: -1.79 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.03 Total: -105.70 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.89 4.45 -62.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.026 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds