Wall clock time and date at job start Tue Mar 31 2020 18:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47219 * 2 1 4 4 C 1.52993 * 109.47353 * 239.99406 * 2 1 3 5 5 C 1.53002 * 109.46912 * 65.00166 * 4 2 1 6 6 C 1.50706 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.38263 * 119.99155 * 89.99699 * 6 5 4 8 8 C 1.38219 * 120.05637 * 180.02562 * 7 6 5 9 9 C 1.38227 * 120.02162 * 359.97438 * 8 7 6 10 10 C 1.38433 * 119.97598 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.02848 * 180.02562 * 10 9 8 12 12 C 1.38178 * 119.98300 * 269.72764 * 6 5 4 13 13 C 1.50703 * 109.47077 * 119.99441 * 2 1 3 14 14 O 1.21280 * 119.99967 * 120.00046 * 13 2 1 15 15 N 1.34774 * 119.99904 * 300.00271 * 13 2 1 16 16 C 1.46503 * 120.00005 * 180.02562 * 15 13 2 17 17 H 1.09003 * 112.85066 * 336.18870 * 16 15 13 18 18 C 1.53779 * 113.69504 * 107.46059 * 16 15 13 19 19 C 1.53788 * 87.08079 * 139.99166 * 18 16 15 20 20 H 1.09000 * 113.68920 * 220.01169 * 19 18 16 21 21 N 1.46496 * 113.61090 * 89.11615 * 19 18 16 22 22 C 1.36945 * 119.99718 * 107.50380 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 C 1.53780 * 87.08077 * 334.56830 * 19 18 16 31 31 H 1.08999 * 109.47021 * 300.00834 * 1 2 3 32 32 H 1.08998 * 109.46716 * 60.00673 * 1 2 3 33 33 H 1.08995 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47544 * 184.99658 * 4 2 1 35 35 H 1.08998 * 109.47629 * 305.00061 * 4 2 1 36 36 H 1.09001 * 109.47098 * 299.99510 * 5 4 2 37 37 H 1.08996 * 109.47549 * 60.00120 * 5 4 2 38 38 H 1.08005 * 119.97087 * 359.97438 * 7 6 5 39 39 H 1.07994 * 119.99356 * 180.02562 * 8 7 6 40 40 H 1.07999 * 120.01028 * 180.02562 * 9 8 7 41 41 H 1.07996 * 120.01827 * 359.97438 * 12 6 5 42 42 H 0.97003 * 120.00660 * 359.97438 * 15 13 2 43 43 H 1.09004 * 113.60736 * 25.44831 * 18 16 15 44 44 H 1.08996 * 113.61543 * 254.54000 * 18 16 15 45 45 H 0.96996 * 120.00499 * 287.50110 * 21 19 18 46 46 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 47 47 H 1.09003 * 113.61267 * 139.98048 * 30 19 18 48 48 H 1.09004 * 113.61818 * 270.79856 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4952 6 6 2.1372 -0.6421 -3.7257 7 6 1.3439 -1.5869 -4.3499 8 6 1.8030 -2.2400 -5.4782 9 6 3.0559 -1.9488 -5.9842 10 6 3.8511 -1.0030 -5.3601 11 9 5.0757 -0.7171 -5.8540 12 6 3.3877 -0.3452 -4.2329 13 6 2.0323 -0.7103 1.2306 14 8 2.7296 -1.6964 1.1194 15 7 1.7067 -0.2497 2.4546 16 6 2.1955 -0.9399 3.6509 17 1 2.4391 -1.9862 3.4661 18 6 3.2988 -0.1734 4.3991 19 6 2.6147 -0.6183 5.7026 20 1 2.5899 0.1552 6.4702 21 7 3.0963 -1.9062 6.2080 22 6 3.8936 -1.9503 7.3205 23 1 4.1677 -1.0356 7.8250 24 6 4.3495 -3.1707 7.7997 25 7 4.0159 -4.2855 7.1846 26 14 5.4377 -3.2308 9.3169 27 1 5.7857 -4.6420 9.6209 28 1 6.6801 -2.4571 9.0658 29 1 4.7119 -2.6410 10.4703 30 6 1.3126 -0.7229 4.8912 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7199 -1.2950 36 1 0.5490 0.1469 -2.5390 37 1 2.0699 1.0673 -2.4495 38 1 0.3649 -1.8154 -3.9550 39 1 1.1824 -2.9776 -5.9652 40 1 3.4143 -2.4589 -6.8660 41 1 4.0054 0.3962 -3.7480 42 1 1.1493 0.5391 2.5436 43 1 3.2692 0.9040 4.2362 44 1 4.2940 -0.5961 4.2620 45 1 2.8504 -2.7277 5.7547 46 1 4.3348 -5.1382 7.5193 47 1 0.7045 -1.5893 5.1513 48 1 0.7394 0.2038 4.8640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752683365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:00 Heat of formation + Delta-G solvation = -45.774850 kcal Electronic energy + Delta-G solvation = -27326.265253 eV Core-core repulsion = 23295.625273 eV Total energy + Delta-G solvation = -4030.639980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.17902 -40.13970 -39.49433 -38.16575 -35.73565 -34.04850 -32.93957 -32.17788 -30.87742 -29.70851 -28.56412 -25.74444 -25.10110 -24.51802 -23.29432 -23.05593 -22.16413 -21.13799 -19.90661 -18.68331 -17.70962 -17.36686 -16.89333 -16.65456 -16.48508 -16.04008 -15.87182 -15.50794 -14.87015 -14.65838 -14.52550 -14.05630 -13.99864 -13.85463 -13.44372 -13.26255 -13.03946 -12.95887 -12.73431 -12.58827 -12.18181 -12.06740 -11.98925 -11.84242 -11.80395 -11.59964 -11.45134 -11.04540 -10.90592 -10.85814 -10.78574 -10.26541 -10.16859 -9.88023 -9.70625 -9.47421 -9.28183 -8.98819 -8.90370 -8.66507 -7.00164 -5.78545 -3.08757 0.80870 0.85320 2.78277 3.18571 3.38090 3.43909 3.48114 3.49511 3.88833 4.25256 4.38372 4.56495 4.57258 4.63177 4.68099 4.75044 4.85314 4.93715 5.05906 5.08215 5.14954 5.21584 5.26270 5.31880 5.40357 5.48388 5.49686 5.55796 5.61858 5.65571 5.74358 5.78318 5.88210 5.92438 5.96832 6.00663 6.09096 6.12400 6.19124 6.24057 6.38757 6.55178 6.63706 6.73771 6.80226 7.05004 7.68341 7.71495 8.39584 8.41571 9.50210 10.06658 10.40567 11.43525 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.001822 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.248282 B =15362.145977 C =16257.344361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.095 4.095 5 C -0.084 4.084 6 C -0.048 4.048 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.162 4.162 10 C 0.100 3.900 11 F -0.141 7.141 12 C -0.152 4.152 13 C 0.511 3.489 14 O -0.537 6.537 15 N -0.718 5.718 16 C 0.125 3.875 17 H 0.112 0.888 18 C -0.184 4.184 19 C 0.171 3.829 20 H 0.068 0.932 21 N -0.705 5.705 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.910 3.090 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.285 1.285 30 C -0.164 4.164 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.395 0.605 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.386 0.614 46 H 0.257 0.743 47 H 0.072 0.928 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 11.821 -25.581 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 H 0.114 0.886 4 C -0.133 4.133 5 C -0.121 4.121 6 C -0.048 4.048 7 C -0.146 4.146 8 C -0.107 4.107 9 C -0.180 4.180 10 C 0.081 3.919 11 F -0.120 7.120 12 C -0.170 4.170 13 C 0.297 3.703 14 O -0.413 6.413 15 N -0.368 5.368 16 C 0.021 3.979 17 H 0.130 0.870 18 C -0.227 4.227 19 C 0.058 3.942 20 H 0.086 0.914 21 N -0.344 5.344 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.212 1.212 30 C -0.204 4.204 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.220 0.780 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.648 11.082 -25.485 29.417 hybrid contribution 0.600 0.073 0.525 0.800 sum -9.048 11.155 -24.960 28.797 Atomic orbital electron populations 1.21836 0.93019 1.02943 1.02530 1.21337 0.97514 1.00867 0.93571 0.88613 1.21379 1.02363 0.99012 0.90552 1.20756 1.01585 0.98657 0.91112 1.19751 0.93110 0.95994 0.95976 1.21149 1.00508 0.96807 0.96099 1.21017 0.94916 0.98867 0.95855 1.21152 0.95468 0.99403 1.02015 1.17726 0.81247 0.97965 0.95012 1.91506 1.40774 1.92586 1.87095 1.21078 0.97288 1.02280 0.96390 1.20606 0.80231 0.84721 0.84791 1.90737 1.37572 1.26294 1.86736 1.46141 1.53223 1.31490 1.05902 1.22620 0.95764 0.98058 0.81461 0.86985 1.24312 0.99528 0.98696 1.00118 1.20911 0.90937 0.90257 0.92077 0.91427 1.42188 1.58471 1.01853 1.31850 1.19223 1.22738 0.92805 1.02947 0.90985 1.24790 1.01081 0.95377 0.99543 1.69660 1.49310 0.97115 1.41688 0.86230 0.80445 0.76557 0.82703 1.21664 1.21188 1.21201 1.23890 0.98720 1.01678 0.96131 0.92081 0.91358 0.91907 0.90702 0.90833 0.90146 0.90561 0.85254 0.84995 0.84901 0.84719 0.77141 0.91352 0.91114 0.77979 0.93312 0.90939 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.11 -0.98 2.72 -91.77 -0.25 -1.23 16 3 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.10 -0.88 4.01 -26.73 -0.11 -0.99 16 5 C -0.08 -0.55 5.10 -27.88 -0.14 -0.69 16 6 C -0.05 -0.38 5.13 -104.63 -0.54 -0.92 16 7 C -0.13 -0.92 9.70 -39.58 -0.38 -1.31 16 8 C -0.09 -0.62 10.04 -39.59 -0.40 -1.01 16 9 C -0.16 -1.30 10.03 -39.51 -0.40 -1.69 16 10 C 0.10 0.95 7.30 -39.42 -0.29 0.67 16 11 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 12 C -0.15 -1.35 9.68 -39.51 -0.38 -1.73 16 13 C 0.51 6.99 7.15 -10.99 -0.08 6.91 16 14 O -0.54 -10.09 15.52 5.56 0.09 -10.00 16 15 N -0.72 -9.09 5.25 -53.01 -0.28 -9.36 16 16 C 0.12 2.05 4.11 -67.12 -0.28 1.78 16 17 H 0.11 2.26 7.46 -51.93 -0.39 1.87 16 18 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 19 C 0.17 3.34 4.56 -67.12 -0.31 3.03 16 20 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 21 N -0.71 -17.71 5.31 -52.64 -0.28 -17.99 16 22 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 26 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 C -0.16 -2.56 7.58 -25.92 -0.20 -2.76 16 31 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 32 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.41 6.51 -51.93 -0.34 0.07 16 37 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.39 3.64 8.15 -40.82 -0.33 3.30 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.39 10.40 7.90 -40.82 -0.32 10.07 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -33.70 400.03 -10.13 -43.82 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.56 Total: 10.60 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.86 Total: -11.43 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.17 Total: -55.00 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.70 -10.13 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752683365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.951 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds