Wall clock time and date at job start Tue Mar 31 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47219 * 2 1 4 4 C 1.52993 * 109.47353 * 239.99406 * 2 1 3 5 5 C 1.53002 * 109.46912 * 65.00166 * 4 2 1 6 6 C 1.50706 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.38263 * 119.99155 * 89.99699 * 6 5 4 8 8 C 1.38219 * 120.05637 * 180.02562 * 7 6 5 9 9 C 1.38227 * 120.02162 * 359.97438 * 8 7 6 10 10 C 1.38433 * 119.97598 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.02848 * 180.02562 * 10 9 8 12 12 C 1.38178 * 119.98300 * 269.72764 * 6 5 4 13 13 C 1.50703 * 109.47077 * 119.99441 * 2 1 3 14 14 O 1.21280 * 119.99967 * 120.00046 * 13 2 1 15 15 N 1.34774 * 119.99904 * 300.00271 * 13 2 1 16 16 C 1.46503 * 120.00005 * 180.02562 * 15 13 2 17 17 H 1.09003 * 112.85066 * 336.18870 * 16 15 13 18 18 C 1.53779 * 113.69504 * 107.46059 * 16 15 13 19 19 C 1.53788 * 87.08079 * 139.99166 * 18 16 15 20 20 H 1.09000 * 113.68920 * 220.01169 * 19 18 16 21 21 N 1.46496 * 113.61090 * 89.11615 * 19 18 16 22 22 C 1.36945 * 119.99718 * 107.50380 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 C 1.53780 * 87.08077 * 334.56830 * 19 18 16 31 31 H 1.08999 * 109.47021 * 300.00834 * 1 2 3 32 32 H 1.08998 * 109.46716 * 60.00673 * 1 2 3 33 33 H 1.08995 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47544 * 184.99658 * 4 2 1 35 35 H 1.08998 * 109.47629 * 305.00061 * 4 2 1 36 36 H 1.09001 * 109.47098 * 299.99510 * 5 4 2 37 37 H 1.08996 * 109.47549 * 60.00120 * 5 4 2 38 38 H 1.08005 * 119.97087 * 359.97438 * 7 6 5 39 39 H 1.07994 * 119.99356 * 180.02562 * 8 7 6 40 40 H 1.07999 * 120.01028 * 180.02562 * 9 8 7 41 41 H 1.07996 * 120.01827 * 359.97438 * 12 6 5 42 42 H 0.97003 * 120.00660 * 359.97438 * 15 13 2 43 43 H 1.09004 * 113.60736 * 25.44831 * 18 16 15 44 44 H 1.08996 * 113.61543 * 254.54000 * 18 16 15 45 45 H 0.96996 * 120.00499 * 287.50110 * 21 19 18 46 46 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 47 47 H 1.09003 * 113.61267 * 139.98048 * 30 19 18 48 48 H 1.09004 * 113.61818 * 270.79856 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4952 6 6 2.1372 -0.6421 -3.7257 7 6 1.3439 -1.5869 -4.3499 8 6 1.8030 -2.2400 -5.4782 9 6 3.0559 -1.9488 -5.9842 10 6 3.8511 -1.0030 -5.3601 11 9 5.0757 -0.7171 -5.8540 12 6 3.3877 -0.3452 -4.2329 13 6 2.0323 -0.7103 1.2306 14 8 2.7296 -1.6964 1.1194 15 7 1.7067 -0.2497 2.4546 16 6 2.1955 -0.9399 3.6509 17 1 2.4391 -1.9862 3.4661 18 6 3.2988 -0.1734 4.3991 19 6 2.6147 -0.6183 5.7026 20 1 2.5899 0.1552 6.4702 21 7 3.0963 -1.9062 6.2080 22 6 3.8936 -1.9503 7.3205 23 1 4.1677 -1.0356 7.8250 24 6 4.3495 -3.1707 7.7997 25 7 4.0159 -4.2855 7.1846 26 14 5.4377 -3.2308 9.3169 27 1 5.7857 -4.6420 9.6209 28 1 6.6801 -2.4571 9.0658 29 1 4.7119 -2.6410 10.4703 30 6 1.3126 -0.7229 4.8912 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7199 -1.2950 36 1 0.5490 0.1469 -2.5390 37 1 2.0699 1.0673 -2.4495 38 1 0.3649 -1.8154 -3.9550 39 1 1.1824 -2.9776 -5.9652 40 1 3.4143 -2.4589 -6.8660 41 1 4.0054 0.3962 -3.7480 42 1 1.1493 0.5391 2.5436 43 1 3.2692 0.9040 4.2362 44 1 4.2940 -0.5961 4.2620 45 1 2.8504 -2.7277 5.7547 46 1 4.3348 -5.1382 7.5193 47 1 0.7045 -1.5893 5.1513 48 1 0.7394 0.2038 4.8640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752683365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:59 Heat of formation + Delta-G solvation = -66.548685 kcal Electronic energy + Delta-G solvation = -27327.166074 eV Core-core repulsion = 23295.625273 eV Total energy + Delta-G solvation = -4031.540801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.92394 -41.25499 -40.18143 -39.49418 -36.53010 -35.72793 -34.32893 -33.07607 -31.62909 -31.44425 -29.20888 -26.62583 -26.50909 -26.01965 -24.75459 -23.67263 -23.21098 -21.90945 -20.93338 -20.06521 -19.35083 -18.44864 -17.79282 -17.40443 -17.32982 -17.08070 -16.67505 -16.62160 -16.39746 -15.80514 -15.61592 -15.25639 -15.02747 -14.89122 -14.52847 -14.41083 -14.10607 -13.83119 -13.63029 -13.54980 -13.32186 -13.29690 -13.18371 -12.77198 -12.69069 -12.61724 -12.46770 -12.40276 -12.22843 -12.09326 -11.81736 -11.71771 -11.65130 -11.56169 -11.31247 -10.89818 -10.62214 -9.92907 -9.89826 -9.61168 -9.03831 -7.96573 -5.26528 0.19184 0.25973 1.46107 1.49970 1.55942 1.70584 2.28397 2.54594 2.63934 3.26367 3.35132 3.64379 3.65385 3.76236 3.83329 3.85806 3.90200 4.00761 4.04904 4.18566 4.30594 4.30908 4.33652 4.38691 4.51671 4.55388 4.56580 4.77405 4.81340 4.83678 4.97837 5.00308 5.01760 5.04959 5.07802 5.14865 5.16780 5.19658 5.26329 5.32940 5.39127 5.40246 5.45194 5.50640 5.61499 5.72427 5.97122 6.25749 6.68240 7.30045 7.38946 8.06836 8.27822 9.26749 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.001822 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.248282 B =15362.145977 C =16257.344361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.126 0.874 4 C -0.091 4.091 5 C -0.073 4.073 6 C -0.058 4.058 7 C -0.130 4.130 8 C -0.090 4.090 9 C -0.169 4.169 10 C 0.071 3.929 11 F -0.154 7.154 12 C -0.166 4.166 13 C 0.503 3.497 14 O -0.598 6.598 15 N -0.700 5.700 16 C 0.130 3.870 17 H 0.064 0.936 18 C -0.171 4.171 19 C 0.149 3.851 20 H 0.079 0.921 21 N -0.724 5.724 22 C -0.244 4.244 23 H 0.083 0.917 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.978 3.022 27 H -0.298 1.298 28 H -0.279 1.279 29 H -0.272 1.272 30 C -0.136 4.136 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.418 0.582 43 H 0.107 0.893 44 H 0.030 0.970 45 H 0.371 0.629 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 14.781 -26.004 32.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.144 0.856 4 C -0.130 4.130 5 C -0.110 4.110 6 C -0.058 4.058 7 C -0.148 4.148 8 C -0.108 4.108 9 C -0.187 4.187 10 C 0.052 3.948 11 F -0.133 7.133 12 C -0.184 4.184 13 C 0.291 3.709 14 O -0.479 6.479 15 N -0.352 5.352 16 C 0.025 3.975 17 H 0.083 0.917 18 C -0.213 4.213 19 C 0.038 3.962 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.376 4.376 23 H 0.100 0.900 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.806 3.194 27 H -0.224 1.224 28 H -0.205 1.205 29 H -0.198 1.198 30 C -0.176 4.176 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.256 0.744 43 H 0.125 0.875 44 H 0.049 0.951 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.103 14.151 -25.917 31.913 hybrid contribution 1.326 -0.803 0.591 1.659 sum -10.777 13.348 -25.326 30.589 Atomic orbital electron populations 1.21876 0.90561 1.02765 1.04799 1.21366 0.99257 1.01230 0.90153 0.85628 1.21296 1.00331 0.98889 0.92446 1.20726 1.03117 0.98463 0.88719 1.19991 0.92831 0.96451 0.96571 1.21514 1.01319 0.96071 0.95901 1.21378 0.94635 0.99019 0.95767 1.21415 0.95856 0.99027 1.02432 1.18066 0.81316 0.99390 0.96056 1.91463 1.41652 1.92853 1.87364 1.21254 0.98029 1.02660 0.96492 1.21630 0.79006 0.84032 0.86245 1.90722 1.40347 1.29209 1.87589 1.45896 1.52983 1.31779 1.04531 1.22124 0.96014 0.95921 0.83458 0.91740 1.24181 0.97453 1.00736 0.98961 1.21272 0.93552 0.88187 0.93169 0.90339 1.42395 1.58751 1.03451 1.31514 1.19690 1.21775 0.93035 1.03110 0.89956 1.25669 1.03372 0.95216 1.02994 1.69841 1.51352 0.97430 1.43652 0.85146 0.78763 0.76038 0.79417 1.22449 1.20502 1.19812 1.23723 0.96888 1.03519 0.93445 0.90554 0.88396 0.93337 0.93778 0.92681 0.87584 0.89129 0.83058 0.82383 0.83668 0.84551 0.74383 0.87511 0.95119 0.79772 0.94062 0.92227 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 71.98 0.64 -0.67 16 2 C -0.10 -1.49 2.72 -11.54 -0.03 -1.52 16 3 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.09 -1.61 4.01 30.59 0.12 -1.48 16 5 C -0.07 -0.78 5.10 29.85 0.15 -0.62 16 6 C -0.06 -0.85 5.13 -19.87 -0.10 -0.96 16 7 C -0.13 -1.64 9.70 22.27 0.22 -1.42 16 8 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 9 C -0.17 -2.64 10.03 22.31 0.22 -2.42 16 10 C 0.07 1.39 7.30 22.38 0.16 1.56 16 11 F -0.15 -3.47 17.27 44.97 0.78 -2.69 16 12 C -0.17 -2.96 9.68 22.32 0.22 -2.75 16 13 C 0.50 13.41 7.15 87.66 0.63 14.03 16 14 O -0.60 -23.56 15.52 -3.03 -0.05 -23.61 16 15 N -0.70 -16.29 5.25 -440.03 -2.31 -18.60 16 16 C 0.13 4.24 4.11 45.52 0.19 4.42 16 17 H 0.06 2.77 7.46 -2.39 -0.02 2.75 16 18 C -0.17 -5.89 7.68 31.12 0.24 -5.65 16 19 C 0.15 5.67 4.56 45.52 0.21 5.87 16 20 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 21 N -0.72 -37.23 5.31 -320.45 -1.70 -38.93 16 22 C -0.24 -13.75 9.97 84.03 0.84 -12.91 16 23 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 25 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 26 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 29 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 30 C -0.14 -3.97 7.58 31.12 0.24 -3.73 16 31 H 0.08 0.50 7.56 -2.39 -0.02 0.48 16 32 H 0.10 0.38 6.56 -2.39 -0.02 0.36 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.04 1.04 7.96 -2.39 -0.02 1.02 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 0.60 6.51 -2.39 -0.02 0.59 16 37 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 38 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.42 5.86 8.15 -92.71 -0.76 5.11 16 43 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.37 20.97 7.90 -92.71 -0.73 20.24 16 46 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.13 2.49 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -79.79 400.03 3.14 -76.66 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.51 Total: 32.88 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.62 Total: -13.40 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -3.73 Total: -118.77 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.79 3.14 -76.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752683365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.109 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds