Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99935 * 2 1 4 4 H 1.07999 * 119.99535 * 185.91532 * 3 2 1 5 5 C 1.38808 * 119.99891 * 5.91137 * 3 2 1 6 6 N 1.31611 * 120.00187 * 6.64542 * 5 3 2 7 7 Si 1.86802 * 119.99892 * 186.63858 * 5 3 2 8 8 H 1.48497 * 109.46987 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47160 * 120.00325 * 7 5 3 10 10 H 1.48506 * 109.47347 * 240.00425 * 7 5 3 11 11 C 1.46498 * 119.99767 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47210 * 92.13627 * 11 2 1 13 13 H 1.08999 * 109.99842 * 305.47558 * 12 11 2 14 14 C 1.54325 * 109.88499 * 66.57230 * 12 11 2 15 15 C 1.55151 * 102.94565 * 141.60927 * 14 12 11 16 16 C 1.54915 * 101.58093 * 324.50409 * 15 14 12 17 17 N 1.47019 * 109.88469 * 184.38138 * 12 11 2 18 18 C 1.34774 * 125.64693 * 61.67600 * 17 12 11 19 19 O 1.21279 * 120.00277 * 4.97596 * 18 17 12 20 20 C 1.50704 * 120.00114 * 184.97440 * 18 17 12 21 21 C 1.53002 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.47046 * 179.97438 * 21 20 18 23 23 C 1.38242 * 119.97648 * 269.72848 * 22 21 20 24 24 C 1.38207 * 120.02505 * 179.72913 * 23 22 21 25 25 C 1.38457 * 119.97091 * 0.52520 * 24 23 22 26 26 F 1.35104 * 120.02633 * 179.72894 * 25 24 23 27 27 C 1.38464 * 119.95150 * 359.74738 * 25 24 23 28 28 C 1.38199 * 119.97136 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47096 * 174.85326 * 1 2 3 30 30 H 1.09005 * 109.46854 * 294.84855 * 1 2 3 31 31 H 1.08995 * 109.47133 * 54.85301 * 1 2 3 32 32 H 0.97005 * 120.00231 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47563 * 332.13150 * 11 2 1 34 34 H 1.09008 * 109.46910 * 212.13379 * 11 2 1 35 35 H 1.09002 * 110.72233 * 259.98062 * 14 12 11 36 36 H 1.09006 * 110.71551 * 23.24650 * 14 12 11 37 37 H 1.09004 * 111.00040 * 82.57165 * 15 14 12 38 38 H 1.08995 * 111.01219 * 206.42486 * 15 14 12 39 39 H 1.09002 * 110.36353 * 278.16430 * 16 15 14 40 40 H 1.09006 * 110.45713 * 155.89557 * 16 15 14 41 41 H 1.09008 * 109.47070 * 300.00038 * 20 18 17 42 42 H 1.09002 * 109.47310 * 59.99787 * 20 18 17 43 43 H 1.08995 * 109.47376 * 300.00226 * 21 20 18 44 44 H 1.09000 * 109.46984 * 60.00264 * 21 20 18 45 45 H 1.08001 * 119.99247 * 359.97438 * 23 22 21 46 46 H 1.07996 * 120.01217 * 180.29348 * 24 23 22 47 47 H 1.07998 * 120.01352 * 179.97438 * 27 25 24 48 48 H 1.08000 * 119.98369 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2254 1.1883 -0.0964 5 6 1.4612 2.3848 0.1238 6 7 0.1687 2.3788 0.3720 7 14 2.3691 4.0068 -0.0617 8 1 3.8043 3.7420 -0.3359 9 1 1.7838 4.7756 -1.1893 10 1 2.2409 4.7921 1.1922 11 6 2.1975 -1.2687 0.0006 12 6 2.4990 -1.6842 -1.4407 13 1 1.5768 -1.7132 -2.0210 14 6 3.4891 -0.6868 -2.0783 15 6 4.4055 -1.6036 -2.9309 16 6 4.4854 -2.8728 -2.0461 17 7 3.1411 -3.0067 -1.4560 18 6 2.5915 -4.1519 -1.0058 19 8 1.4411 -4.1626 -0.6218 20 6 3.4063 -5.4194 -0.9794 21 6 2.5527 -6.5632 -0.4280 22 6 3.3674 -7.8307 -0.4022 23 6 3.3675 -8.6740 -1.4976 24 6 4.1187 -9.8340 -1.4772 25 6 4.8627 -10.1566 -0.3549 26 9 5.5931 -11.2929 -0.3317 27 6 4.8573 -9.3139 0.7438 28 6 4.1099 -8.1518 0.7188 29 1 -0.3633 -1.0235 -0.0922 30 1 -0.3633 0.4319 0.9326 31 1 -0.3633 0.5916 -0.8403 32 1 -0.3125 3.2167 0.4589 33 1 1.5924 -2.0375 0.4813 34 1 3.1328 -1.1480 0.5472 35 1 2.9628 0.0281 -2.7108 36 1 4.0661 -0.1719 -1.3101 37 1 3.9470 -1.8272 -3.8942 38 1 5.3909 -1.1570 -3.0633 39 1 5.2323 -2.7428 -1.2630 40 1 4.7219 -3.7464 -2.6536 41 1 3.7317 -5.6633 -1.9908 42 1 4.2787 -5.2774 -0.3414 43 1 2.2277 -6.3191 0.5834 44 1 1.6802 -6.7054 -1.0656 45 1 2.7836 -8.4245 -2.3712 46 1 4.1225 -10.4903 -2.3349 47 1 5.4369 -9.5648 1.6198 48 1 4.1052 -7.4946 1.5758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755193673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = -31.690325 kcal Electronic energy + Delta-G solvation = -28384.729527 eV Core-core repulsion = 24354.700298 eV Total energy + Delta-G solvation = -4030.029229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.18976 -40.10364 -39.38937 -37.39890 -35.29019 -34.01002 -31.67890 -31.47890 -31.31372 -29.63685 -28.75412 -25.88037 -25.28882 -24.83547 -23.39504 -22.61631 -21.42313 -21.17699 -20.07602 -18.54693 -17.98700 -17.07909 -16.86582 -16.74589 -16.06837 -15.88788 -15.58335 -15.22519 -14.78497 -14.58236 -14.29605 -13.91837 -13.71423 -13.63744 -13.36812 -13.26035 -12.92943 -12.87997 -12.73538 -12.49006 -12.04838 -11.95863 -11.84515 -11.60241 -11.48960 -11.19897 -11.09629 -10.93465 -10.85101 -10.73166 -10.45067 -10.30989 -10.06398 -9.80871 -9.66432 -9.49157 -9.46035 -8.84391 -8.60436 -8.32558 -6.82397 -5.58425 -3.03140 0.78747 0.88168 2.84786 3.12109 3.31463 3.39262 3.44484 3.47271 3.93743 4.35116 4.36976 4.52816 4.54741 4.74645 4.79092 4.84034 4.89992 4.97853 5.04257 5.15286 5.22746 5.35744 5.45541 5.51099 5.58484 5.67430 5.68615 5.69405 5.71790 5.78021 5.81540 5.89547 5.96753 6.00038 6.08200 6.25947 6.33282 6.40224 6.55553 6.57959 6.64467 6.82516 6.93848 6.99537 7.67372 7.78125 7.82707 8.01046 8.40141 8.44827 9.31438 9.95253 10.39937 11.40202 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.002127 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.067422 B =13158.655023 C =13564.116420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.606 5.606 3 C -0.240 4.240 4 H 0.075 0.925 5 C -0.008 4.008 6 N -0.916 5.916 7 Si 0.905 3.095 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.150 3.850 12 C 0.114 3.886 13 H 0.068 0.932 14 C -0.109 4.109 15 C -0.138 4.138 16 C 0.101 3.899 17 N -0.613 5.613 18 C 0.522 3.478 19 O -0.537 6.537 20 C -0.130 4.130 21 C -0.066 4.066 22 C -0.087 4.087 23 C -0.088 4.088 24 C -0.152 4.152 25 C 0.089 3.911 26 F -0.143 7.143 27 C -0.151 4.151 28 C -0.087 4.087 29 H -0.005 1.005 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.248 0.752 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -21.798 -5.259 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.329 5.329 3 C -0.370 4.370 4 H 0.093 0.907 5 C -0.204 4.204 6 N -0.564 5.564 7 Si 0.736 3.264 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.021 3.979 12 C 0.009 3.991 13 H 0.086 0.914 14 C -0.147 4.147 15 C -0.176 4.176 16 C -0.023 4.023 17 N -0.348 5.348 18 C 0.311 3.689 19 O -0.414 6.414 20 C -0.170 4.170 21 C -0.104 4.104 22 C -0.088 4.088 23 C -0.106 4.106 24 C -0.171 4.171 25 C 0.070 3.930 26 F -0.122 7.122 27 C -0.170 4.170 28 C -0.105 4.105 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.553 -21.751 -4.982 24.684 hybrid contribution 0.727 0.748 -0.231 1.068 sum 11.280 -21.003 -5.214 24.404 Atomic orbital electron populations 1.21029 0.81570 0.93311 1.01715 1.43988 1.02430 1.00328 1.86140 1.19339 0.91179 0.83623 1.42817 0.90738 1.24871 0.95956 0.97808 1.01795 1.70222 1.06827 1.24482 1.54882 0.86153 0.78643 0.84288 0.77308 1.20542 1.21808 1.21902 1.20979 0.96047 0.88706 0.92157 1.22681 0.95555 0.79527 1.01306 0.91428 1.22589 0.96517 0.96614 0.98974 1.22841 1.00855 0.95528 0.98425 1.22289 0.85003 0.98632 0.96363 1.48765 1.16847 1.08273 1.60905 1.20193 0.87336 0.83839 0.77571 1.90727 1.17592 1.85279 1.47825 1.21634 0.99410 0.92535 1.03379 1.20360 0.96829 0.89415 1.03796 1.20051 0.97964 0.96855 0.93896 1.20983 0.98032 0.93122 0.98424 1.21151 0.98892 0.99138 0.97898 1.17750 0.94982 0.84250 0.96055 1.91497 1.75407 1.48320 1.96948 1.21166 1.02176 0.95459 0.98206 1.21008 0.95256 0.95889 0.98308 0.98665 0.93230 0.94919 0.94077 0.93188 0.94119 0.90043 0.90150 0.91195 0.90320 0.91546 0.91306 0.89213 0.88967 0.89692 0.89845 0.84881 0.84818 0.84767 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.42 8.98 59.85 0.54 4.95 16 2 N -0.61 -15.44 2.89 -181.12 -0.52 -15.96 16 3 C -0.24 -6.42 8.81 -15.06 -0.13 -6.55 16 4 H 0.07 1.90 6.54 -52.49 -0.34 1.55 16 5 C -0.01 -0.23 5.40 -17.44 -0.09 -0.32 16 6 N -0.92 -26.87 9.58 55.49 0.53 -26.34 16 7 Si 0.91 21.72 29.56 -169.99 -5.02 16.69 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.15 3.22 5.15 -4.04 -0.02 3.20 16 12 C 0.11 2.08 3.09 -66.95 -0.21 1.87 16 13 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.11 -1.76 5.48 -24.90 -0.14 -1.90 16 15 C -0.14 -1.60 7.09 -24.58 -0.17 -1.77 16 16 C 0.10 1.09 6.65 -2.53 -0.02 1.07 16 17 N -0.61 -9.00 3.06 -163.02 -0.50 -9.50 16 18 C 0.52 7.67 7.57 -10.98 -0.08 7.58 16 19 O -0.54 -10.13 15.16 5.56 0.08 -10.05 16 20 C -0.13 -1.26 4.77 -27.88 -0.13 -1.39 16 21 C -0.07 -0.63 4.63 -27.88 -0.13 -0.76 16 22 C -0.09 -0.73 5.13 -104.62 -0.54 -1.27 16 23 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 24 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 25 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.36 16 27 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 28 C -0.09 -0.68 9.70 -39.59 -0.38 -1.07 16 29 H -0.01 -0.13 7.81 -51.93 -0.41 -0.54 16 30 H 0.05 1.41 6.82 -51.93 -0.35 1.06 16 31 H 0.03 0.91 7.31 -51.93 -0.38 0.53 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 1.14 6.68 -51.93 -0.35 0.79 16 34 H 0.04 0.86 7.95 -51.92 -0.41 0.45 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.39 6.38 -51.93 -0.33 1.06 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.58 7.50 -51.93 -0.39 0.19 16 41 H 0.09 0.72 7.76 -51.92 -0.40 0.31 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 44 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 48 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -32.09 388.60 -10.08 -42.17 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.56 Total: -1.42 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.98 Total: -0.10 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.49 Total: -51.80 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.09 -10.08 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755193673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.479 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds