Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99935 * 2 1 4 4 H 1.07999 * 119.99535 * 185.91532 * 3 2 1 5 5 C 1.38808 * 119.99891 * 5.91137 * 3 2 1 6 6 N 1.31611 * 120.00187 * 6.64542 * 5 3 2 7 7 Si 1.86802 * 119.99892 * 186.63858 * 5 3 2 8 8 H 1.48497 * 109.46987 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47160 * 120.00325 * 7 5 3 10 10 H 1.48506 * 109.47347 * 240.00425 * 7 5 3 11 11 C 1.46498 * 119.99767 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47210 * 92.13627 * 11 2 1 13 13 H 1.08999 * 109.99842 * 305.47558 * 12 11 2 14 14 C 1.54325 * 109.88499 * 66.57230 * 12 11 2 15 15 C 1.55151 * 102.94565 * 141.60927 * 14 12 11 16 16 C 1.54915 * 101.58093 * 324.50409 * 15 14 12 17 17 N 1.47019 * 109.88469 * 184.38138 * 12 11 2 18 18 C 1.34774 * 125.64693 * 61.67600 * 17 12 11 19 19 O 1.21279 * 120.00277 * 4.97596 * 18 17 12 20 20 C 1.50704 * 120.00114 * 184.97440 * 18 17 12 21 21 C 1.53002 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.47046 * 179.97438 * 21 20 18 23 23 C 1.38242 * 119.97648 * 269.72848 * 22 21 20 24 24 C 1.38207 * 120.02505 * 179.72913 * 23 22 21 25 25 C 1.38457 * 119.97091 * 0.52520 * 24 23 22 26 26 F 1.35104 * 120.02633 * 179.72894 * 25 24 23 27 27 C 1.38464 * 119.95150 * 359.74738 * 25 24 23 28 28 C 1.38199 * 119.97136 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47096 * 174.85326 * 1 2 3 30 30 H 1.09005 * 109.46854 * 294.84855 * 1 2 3 31 31 H 1.08995 * 109.47133 * 54.85301 * 1 2 3 32 32 H 0.97005 * 120.00231 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47563 * 332.13150 * 11 2 1 34 34 H 1.09008 * 109.46910 * 212.13379 * 11 2 1 35 35 H 1.09002 * 110.72233 * 259.98062 * 14 12 11 36 36 H 1.09006 * 110.71551 * 23.24650 * 14 12 11 37 37 H 1.09004 * 111.00040 * 82.57165 * 15 14 12 38 38 H 1.08995 * 111.01219 * 206.42486 * 15 14 12 39 39 H 1.09002 * 110.36353 * 278.16430 * 16 15 14 40 40 H 1.09006 * 110.45713 * 155.89557 * 16 15 14 41 41 H 1.09008 * 109.47070 * 300.00038 * 20 18 17 42 42 H 1.09002 * 109.47310 * 59.99787 * 20 18 17 43 43 H 1.08995 * 109.47376 * 300.00226 * 21 20 18 44 44 H 1.09000 * 109.46984 * 60.00264 * 21 20 18 45 45 H 1.08001 * 119.99247 * 359.97438 * 23 22 21 46 46 H 1.07996 * 120.01217 * 180.29348 * 24 23 22 47 47 H 1.07998 * 120.01352 * 179.97438 * 27 25 24 48 48 H 1.08000 * 119.98369 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2254 1.1883 -0.0964 5 6 1.4612 2.3848 0.1238 6 7 0.1687 2.3788 0.3720 7 14 2.3691 4.0068 -0.0617 8 1 3.8043 3.7420 -0.3359 9 1 1.7838 4.7756 -1.1893 10 1 2.2409 4.7921 1.1922 11 6 2.1975 -1.2687 0.0006 12 6 2.4990 -1.6842 -1.4407 13 1 1.5768 -1.7132 -2.0210 14 6 3.4891 -0.6868 -2.0783 15 6 4.4055 -1.6036 -2.9309 16 6 4.4854 -2.8728 -2.0461 17 7 3.1411 -3.0067 -1.4560 18 6 2.5915 -4.1519 -1.0058 19 8 1.4411 -4.1626 -0.6218 20 6 3.4063 -5.4194 -0.9794 21 6 2.5527 -6.5632 -0.4280 22 6 3.3674 -7.8307 -0.4022 23 6 3.3675 -8.6740 -1.4976 24 6 4.1187 -9.8340 -1.4772 25 6 4.8627 -10.1566 -0.3549 26 9 5.5931 -11.2929 -0.3317 27 6 4.8573 -9.3139 0.7438 28 6 4.1099 -8.1518 0.7188 29 1 -0.3633 -1.0235 -0.0922 30 1 -0.3633 0.4319 0.9326 31 1 -0.3633 0.5916 -0.8403 32 1 -0.3125 3.2167 0.4589 33 1 1.5924 -2.0375 0.4813 34 1 3.1328 -1.1480 0.5472 35 1 2.9628 0.0281 -2.7108 36 1 4.0661 -0.1719 -1.3101 37 1 3.9470 -1.8272 -3.8942 38 1 5.3909 -1.1570 -3.0633 39 1 5.2323 -2.7428 -1.2630 40 1 4.7219 -3.7464 -2.6536 41 1 3.7317 -5.6633 -1.9908 42 1 4.2787 -5.2774 -0.3414 43 1 2.2277 -6.3191 0.5834 44 1 1.6802 -6.7054 -1.0656 45 1 2.7836 -8.4245 -2.3712 46 1 4.1225 -10.4903 -2.3349 47 1 5.4369 -9.5648 1.6198 48 1 4.1052 -7.4946 1.5758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755193673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = -48.384933 kcal Electronic energy + Delta-G solvation = -28385.453460 eV Core-core repulsion = 24354.700298 eV Total energy + Delta-G solvation = -4030.753162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.86559 -41.23348 -40.09402 -38.69645 -37.13980 -34.82711 -33.46986 -32.56325 -32.04925 -30.81194 -29.92128 -28.01513 -26.75437 -25.83510 -23.96889 -23.81108 -22.86088 -22.16147 -21.37109 -19.74053 -18.87288 -18.61516 -18.10161 -17.51587 -17.28164 -16.68127 -16.56460 -16.41884 -16.12048 -15.72510 -15.39823 -15.10943 -14.89152 -14.66497 -14.52321 -14.37329 -14.24724 -13.88937 -13.78821 -13.76715 -13.46071 -13.39838 -12.79826 -12.78455 -12.66397 -12.63662 -12.39791 -12.26935 -12.15134 -12.03354 -11.93535 -11.86644 -11.75226 -11.47693 -11.42136 -10.76891 -10.67449 -10.02971 -9.67962 -9.49457 -8.87620 -7.70780 -5.18184 0.16059 0.31324 1.48525 1.49146 1.59496 1.71860 2.06550 2.54159 2.64591 3.32942 3.37305 3.49170 3.69035 3.79757 3.84707 3.87840 4.01005 4.04420 4.08728 4.17796 4.29480 4.38425 4.40073 4.47969 4.50659 4.53167 4.64127 4.77306 4.81281 4.89909 4.90764 5.00905 5.05686 5.06907 5.12167 5.16504 5.20501 5.20757 5.25576 5.32076 5.43484 5.44518 5.54015 5.63726 5.66386 5.79583 5.96390 6.30030 6.70300 7.16913 7.27469 7.87926 8.31364 9.28440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.002127 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.067422 B =13158.655023 C =13564.116420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.621 5.621 3 C -0.237 4.237 4 H 0.090 0.910 5 C -0.072 4.072 6 N -0.953 5.953 7 Si 0.974 3.026 8 H -0.258 1.258 9 H -0.296 1.296 10 H -0.298 1.298 11 C 0.155 3.845 12 C 0.125 3.875 13 H 0.033 0.967 14 C -0.108 4.108 15 C -0.125 4.125 16 C 0.098 3.902 17 N -0.615 5.615 18 C 0.515 3.485 19 O -0.589 6.589 20 C -0.115 4.115 21 C -0.061 4.061 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.153 4.153 25 C 0.071 3.929 26 F -0.152 7.152 27 C -0.155 4.155 28 C -0.090 4.090 29 H 0.005 0.995 30 H 0.023 0.977 31 H 0.009 0.991 32 H 0.242 0.758 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.690 -23.028 -6.548 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.345 5.345 3 C -0.366 4.366 4 H 0.107 0.893 5 C -0.264 4.264 6 N -0.603 5.603 7 Si 0.803 3.197 8 H -0.182 1.182 9 H -0.223 1.223 10 H -0.226 1.226 11 C 0.028 3.972 12 C 0.018 3.982 13 H 0.051 0.949 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.023 4.023 17 N -0.349 5.349 18 C 0.305 3.695 19 O -0.470 6.470 20 C -0.154 4.154 21 C -0.098 4.098 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.172 4.172 25 C 0.052 3.948 26 F -0.131 7.131 27 C -0.173 4.173 28 C -0.108 4.108 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.165 0.835 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.005 -23.028 -6.293 27.677 hybrid contribution -0.348 1.036 0.202 1.111 sum 13.657 -21.992 -6.092 26.595 Atomic orbital electron populations 1.20639 0.82644 0.92991 0.99305 1.44192 1.02160 1.01682 1.86450 1.19722 0.91878 0.83931 1.41070 0.89270 1.25738 0.96835 1.01349 1.02466 1.70426 1.08450 1.24755 1.56686 0.85074 0.78549 0.79693 0.76434 1.18180 1.22292 1.22552 1.21010 0.95206 0.86507 0.94469 1.22121 0.95528 0.82504 0.98025 0.94852 1.22453 0.96626 0.96447 0.99113 1.22839 1.01025 0.94539 0.97862 1.22605 0.82823 0.99839 0.97076 1.48836 1.18255 1.06757 1.61037 1.21187 0.87111 0.85057 0.76099 1.90709 1.20189 1.86163 1.49930 1.21638 0.98885 0.89355 1.05571 1.20239 0.96783 0.90111 1.02706 1.19957 0.98077 0.96488 0.94489 1.21163 0.97849 0.92764 0.98768 1.21350 0.98378 0.99362 0.98112 1.18022 0.95560 0.84322 0.96899 1.91473 1.75721 1.48838 1.97038 1.21338 1.02211 0.95283 0.98497 1.21158 0.94999 0.96043 0.98584 0.97694 0.95860 0.97202 0.94796 0.95116 0.93558 0.92180 0.91181 0.90493 0.87462 0.89831 0.87455 0.86310 0.86777 0.91225 0.90823 0.83278 0.83320 0.83529 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.46 8.98 127.77 1.15 11.61 16 2 N -0.62 -32.57 2.89 -726.92 -2.10 -34.67 16 3 C -0.24 -12.75 8.81 84.03 0.74 -12.01 16 4 H 0.09 4.46 6.54 -2.91 -0.02 4.44 16 5 C -0.07 -4.04 5.40 84.86 0.46 -3.58 16 6 N -0.95 -57.88 9.58 21.65 0.21 -57.67 16 7 Si 0.97 44.98 29.56 68.60 2.03 47.01 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 11 C 0.16 6.80 5.15 86.38 0.44 7.24 16 12 C 0.12 4.52 3.09 45.34 0.14 4.66 16 13 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 14 C -0.11 -3.36 5.48 31.78 0.17 -3.19 16 15 C -0.12 -2.41 7.09 31.99 0.23 -2.19 16 16 C 0.10 1.69 6.65 86.86 0.58 2.27 16 17 N -0.62 -16.89 3.06 -788.05 -2.41 -19.30 16 18 C 0.51 14.43 7.57 87.66 0.66 15.09 16 19 O -0.59 -22.66 15.16 -3.03 -0.05 -22.70 16 20 C -0.12 -1.88 4.77 29.85 0.14 -1.74 16 21 C -0.06 -1.05 4.63 29.85 0.14 -0.92 16 22 C -0.09 -1.29 5.13 -19.86 -0.10 -1.39 16 23 C -0.09 -1.11 9.70 22.26 0.22 -0.90 16 24 C -0.15 -2.06 10.03 22.31 0.22 -1.84 16 25 C 0.07 1.14 7.30 22.38 0.16 1.30 16 26 F -0.15 -2.77 17.27 44.97 0.78 -2.00 16 27 C -0.15 -2.18 10.03 22.31 0.22 -1.96 16 28 C -0.09 -1.23 9.70 22.26 0.22 -1.01 16 29 H 0.00 0.24 7.81 -2.39 -0.02 0.22 16 30 H 0.02 1.39 6.82 -2.38 -0.02 1.37 16 31 H 0.01 0.56 7.31 -2.39 -0.02 0.54 16 32 H 0.24 14.34 8.31 -92.70 -0.77 13.57 16 33 H 0.03 1.44 6.68 -2.39 -0.02 1.43 16 34 H 0.05 1.95 7.95 -2.38 -0.02 1.93 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.32 6.38 -2.38 -0.02 2.30 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.12 7.50 -2.38 -0.02 1.11 16 41 H 0.12 1.32 7.76 -2.38 -0.02 1.30 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.42 8.04 -2.39 -0.02 1.41 16 44 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 45 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -73.56 388.60 5.19 -68.37 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.94 Total: 9.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.80 Total: 11.45 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.31 Total: -111.65 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.56 5.19 -68.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755193673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.984 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds