Wall clock time and date at job start Tue Mar 31 2020 18:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99644 * 2 1 4 4 H 1.07996 * 119.99915 * 204.43352 * 3 2 1 5 5 C 1.38812 * 120.00213 * 24.43847 * 3 2 1 6 6 N 1.31626 * 119.99908 * 13.13129 * 5 3 2 7 7 Si 1.86797 * 120.00134 * 193.13641 * 5 3 2 8 8 H 1.48502 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47383 * 119.99666 * 7 5 3 10 10 H 1.48499 * 109.47155 * 239.99684 * 7 5 3 11 11 C 1.46493 * 120.00350 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47378 * 89.99882 * 11 2 1 13 13 H 1.08997 * 109.46955 * 305.00559 * 12 11 2 14 14 O 1.42901 * 109.46844 * 65.00245 * 12 11 2 15 15 C 1.52993 * 109.47261 * 184.99961 * 12 11 2 16 16 N 1.46504 * 109.47072 * 180.02562 * 15 12 11 17 17 C 1.46505 * 119.99802 * 270.00185 * 16 15 12 18 18 C 1.34779 * 119.99983 * 90.00220 * 16 15 12 19 19 O 1.21275 * 119.99889 * 6.55574 * 18 16 15 20 20 C 1.50698 * 119.99830 * 186.55994 * 18 16 15 21 21 C 1.52999 * 109.46869 * 186.87185 * 20 18 16 22 22 C 1.52998 * 109.46979 * 179.97438 * 21 20 18 23 23 C 1.53011 * 109.47107 * 60.00281 * 22 21 20 24 24 F 1.39897 * 109.47152 * 59.99472 * 23 22 21 25 25 F 1.39896 * 109.46908 * 180.02562 * 23 22 21 26 26 C 1.53000 * 109.46512 * 300.00002 * 23 22 21 27 27 C 1.52995 * 109.47593 * 59.99872 * 26 23 22 28 28 H 1.08999 * 109.47718 * 269.58771 * 1 2 3 29 29 H 1.09003 * 109.47473 * 29.58857 * 1 2 3 30 30 H 1.09008 * 109.46817 * 149.58439 * 1 2 3 31 31 H 0.97005 * 119.99570 * 179.97438 * 6 5 3 32 32 H 1.09008 * 109.46820 * 330.00229 * 11 2 1 33 33 H 1.09000 * 109.47164 * 210.00314 * 11 2 1 34 34 H 0.96698 * 113.99950 * 59.99886 * 14 12 11 35 35 H 1.09004 * 109.47241 * 60.00328 * 15 12 11 36 36 H 1.08997 * 109.47624 * 300.00188 * 15 12 11 37 37 H 1.08998 * 109.46849 * 264.84871 * 17 16 15 38 38 H 1.08999 * 109.47194 * 24.85076 * 17 16 15 39 39 H 1.08997 * 109.46874 * 144.85176 * 17 16 15 40 40 H 1.09008 * 109.46863 * 306.87112 * 20 18 16 41 41 H 1.09003 * 109.47459 * 60.00247 * 21 20 18 42 42 H 1.08998 * 109.47354 * 299.99638 * 21 20 18 43 43 H 1.09004 * 109.47489 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47530 * 299.99970 * 22 21 20 45 45 H 1.09002 * 109.46772 * 180.02562 * 26 23 22 46 46 H 1.09008 * 109.46930 * 299.99591 * 26 23 22 47 47 H 1.08998 * 109.46685 * 59.99692 * 27 26 23 48 48 H 1.09003 * 109.47004 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1570 1.2279 -0.3869 5 6 1.5488 2.3342 0.4973 6 7 0.4384 2.2451 1.1985 7 14 2.3159 4.0059 0.1714 8 1 3.5513 3.8349 -0.6348 9 1 1.3524 4.8562 -0.5729 10 1 2.6543 4.6556 1.4631 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5063 -1.7557 -1.9807 14 8 3.3210 -0.7733 -2.0810 15 6 3.1062 -3.0943 -1.4429 16 7 3.3509 -3.5176 -2.8239 17 6 2.3266 -4.2710 -3.5516 18 6 4.5184 -3.2139 -3.4250 19 8 5.4115 -2.6962 -2.7884 20 6 4.7140 -3.5176 -4.8880 21 6 6.1669 -3.2372 -5.2772 22 6 6.3656 -3.5462 -6.7625 23 6 5.4348 -2.6631 -7.5961 24 9 5.7303 -1.3169 -7.3561 25 9 5.6161 -2.9460 -8.9541 26 6 3.9820 -2.9435 -7.2068 27 6 3.7832 -2.6347 -5.7216 28 1 -0.3634 -0.0074 1.0276 29 1 -0.3634 0.8937 -0.5074 30 1 -0.3633 -0.8863 -0.5203 31 1 0.0188 3.0476 1.5464 32 1 1.6084 -2.0281 0.5148 33 1 3.1499 -1.1380 0.5144 34 1 4.1837 -0.6817 -1.6538 35 1 2.4438 -3.8096 -0.9553 36 1 4.0525 -3.0496 -0.9039 37 1 2.5309 -5.3382 -3.4657 38 1 1.3461 -4.0535 -3.1280 39 1 2.3407 -3.9817 -4.6024 40 1 4.4835 -4.5665 -5.0753 41 1 6.8300 -3.8666 -4.6837 42 1 6.3973 -2.1885 -5.0900 43 1 7.4006 -3.3460 -7.0400 44 1 6.1353 -4.5950 -6.9495 45 1 3.3188 -2.3148 -7.8009 46 1 3.7517 -3.9924 -7.3938 47 1 4.0135 -1.5858 -5.5347 48 1 2.7480 -2.8340 -5.4444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755804755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:24 Heat of formation + Delta-G solvation = -167.651177 kcal Electronic energy + Delta-G solvation = -30832.247894 eV Core-core repulsion = 26365.553735 eV Total energy + Delta-G solvation = -4466.694159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.17547 -47.16042 -40.43163 -37.79053 -36.82009 -35.41527 -34.48473 -31.61759 -31.34412 -30.81855 -29.28640 -27.06319 -25.99397 -25.49665 -23.53119 -23.43898 -21.89553 -20.52654 -20.43694 -19.19653 -17.64620 -17.31755 -17.01816 -16.76550 -16.51152 -16.23347 -15.68733 -15.23450 -14.90247 -14.60015 -14.52359 -14.23063 -14.01145 -13.72910 -13.52730 -13.47220 -13.26350 -13.11479 -12.97808 -12.87573 -12.83362 -12.45714 -12.34771 -11.98873 -11.87883 -11.71328 -11.57483 -11.46299 -11.04025 -11.00279 -10.81991 -10.59202 -10.54968 -10.41041 -10.35934 -9.91046 -9.85650 -9.72428 -9.53213 -8.58244 -8.33153 -6.61695 -5.65995 -3.10408 2.63068 2.98369 3.44442 3.47805 3.51815 3.56146 3.75584 3.96297 4.05576 4.46529 4.51634 4.56906 4.59648 4.72290 4.83739 4.93395 4.94345 5.02386 5.12192 5.21956 5.24348 5.33537 5.38121 5.41385 5.46094 5.49096 5.52101 5.66208 5.69076 5.74692 5.89506 5.92556 5.99856 6.03902 6.09492 6.48398 6.54800 6.72411 6.82044 7.38154 7.38407 7.70629 7.93675 8.22094 8.40184 8.50882 9.31551 9.93657 10.42824 11.40740 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003016 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.774042 B = 9283.066127 C =10267.618037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.238 4.238 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.913 5.913 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.125 3.875 12 C 0.073 3.927 13 H 0.084 0.916 14 O -0.542 6.542 15 C 0.079 3.921 16 N -0.608 5.608 17 C 0.066 3.934 18 C 0.527 3.473 19 O -0.533 6.533 20 C -0.108 4.108 21 C -0.100 4.100 22 C -0.157 4.157 23 C 0.286 3.714 24 F -0.195 7.195 25 F -0.205 7.205 26 C -0.155 4.155 27 C -0.117 4.117 28 H 0.023 0.977 29 H 0.048 0.952 30 H -0.008 1.008 31 H 0.250 0.750 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.368 0.632 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -19.012 -15.908 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.314 5.314 3 C -0.368 4.368 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.559 5.559 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.218 1.218 10 H -0.219 1.219 11 C -0.004 4.004 12 C 0.009 3.991 13 H 0.102 0.898 14 O -0.346 6.346 15 C -0.044 4.044 16 N -0.341 5.341 17 C -0.077 4.077 18 C 0.315 3.685 19 O -0.409 6.409 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.195 4.195 23 C 0.250 3.750 24 F -0.176 7.176 25 F -0.186 7.186 26 C -0.193 4.193 27 C -0.155 4.155 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.214 0.786 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.089 -18.497 -15.899 25.140 hybrid contribution 0.543 0.883 0.076 1.039 sum 6.633 -17.614 -15.823 24.589 Atomic orbital electron populations 1.20759 0.82861 0.96230 0.98286 1.43737 1.01566 1.00504 1.85629 1.19248 0.99112 0.85581 1.32858 0.91230 1.25032 0.98220 0.98608 0.98229 1.70081 1.20864 1.27160 1.37761 0.86193 0.78665 0.84444 0.77353 1.20210 1.21779 1.21932 1.21325 0.96885 0.89444 0.92786 1.23141 0.92826 0.85630 0.97479 0.89760 1.86544 1.28836 1.63073 1.56165 1.22408 1.02254 0.97877 0.81852 1.47682 1.16221 1.55717 1.14499 1.22058 0.92198 0.95477 0.97926 1.20262 0.81641 0.77904 0.88719 1.90671 1.41472 1.42857 1.65934 1.21374 0.97450 1.01464 0.92655 1.21329 0.94806 1.04672 0.92978 1.22546 1.00421 1.00369 0.96122 1.21146 0.97495 0.78818 0.77576 1.93028 1.94730 1.35762 1.94111 1.93001 1.96626 1.93493 1.35487 1.22519 0.93580 1.04693 0.98527 1.21677 1.00334 1.01689 0.91776 0.95873 0.93294 0.98938 0.93996 0.94066 0.93077 0.78573 0.90264 0.89684 0.92786 0.90675 0.90423 0.88724 0.89884 0.89597 0.89151 0.88832 0.88994 0.88695 0.89501 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.99 59.85 0.54 4.59 16 2 N -0.59 -14.95 2.90 -181.12 -0.52 -15.47 16 3 C -0.24 -6.68 9.20 -15.06 -0.14 -6.82 16 4 H 0.07 1.95 7.54 -52.49 -0.40 1.55 16 5 C 0.00 -0.10 5.05 -17.43 -0.09 -0.19 16 6 N -0.91 -27.23 10.85 55.49 0.60 -26.63 16 7 Si 0.90 22.76 29.57 -169.99 -5.03 17.73 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 C 0.12 2.46 5.35 -4.05 -0.02 2.44 16 12 C 0.07 1.23 3.48 -26.73 -0.09 1.14 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 14 O -0.54 -10.66 11.51 -35.67 -0.41 -11.07 16 15 C 0.08 1.04 5.16 -4.04 -0.02 1.02 16 16 N -0.61 -7.01 2.83 -181.57 -0.51 -7.53 16 17 C 0.07 0.51 9.88 59.85 0.59 1.10 16 18 C 0.53 6.71 6.36 -10.99 -0.07 6.64 16 19 O -0.53 -8.74 14.80 5.12 0.08 -8.67 16 20 C -0.11 -0.98 1.71 -91.77 -0.16 -1.13 16 21 C -0.10 -0.93 4.40 -26.73 -0.12 -1.05 16 22 C -0.16 -1.17 5.45 -26.73 -0.15 -1.32 16 23 C 0.29 2.65 2.10 -26.73 -0.06 2.59 16 24 F -0.20 -2.39 16.03 2.25 0.04 -2.35 16 25 F -0.21 -2.11 17.06 2.25 0.04 -2.07 16 26 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 27 C -0.12 -1.05 4.76 -26.74 -0.13 -1.17 16 28 H 0.02 0.61 7.63 -51.93 -0.40 0.21 16 29 H 0.05 1.32 7.07 -51.93 -0.37 0.96 16 30 H -0.01 -0.17 8.08 -51.92 -0.42 -0.59 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 0.74 8.07 -51.92 -0.42 0.32 16 33 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.37 7.00 8.68 45.56 0.40 7.40 16 35 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.08 1.21 7.34 -51.93 -0.38 0.83 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.56 8.03 -51.93 -0.42 0.15 16 39 H 0.08 0.49 4.19 -51.93 -0.22 0.27 16 40 H 0.09 0.60 7.75 -51.92 -0.40 0.20 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.09 1.04 7.80 -51.93 -0.41 0.63 16 48 H 0.09 0.73 5.30 -51.93 -0.28 0.45 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -34.29 380.78 -7.07 -41.36 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.03 Total: 2.42 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.05 Total: 6.55 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.44 Total: -49.63 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.33 Total: -19.74 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.42 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.29 -7.07 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755804755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.295 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds