Wall clock time and date at job start Tue Mar 31 2020 18:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99644 * 2 1 4 4 H 1.07996 * 119.99915 * 204.43352 * 3 2 1 5 5 C 1.38812 * 120.00213 * 24.43847 * 3 2 1 6 6 N 1.31626 * 119.99908 * 13.13129 * 5 3 2 7 7 Si 1.86797 * 120.00134 * 193.13641 * 5 3 2 8 8 H 1.48502 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47383 * 119.99666 * 7 5 3 10 10 H 1.48499 * 109.47155 * 239.99684 * 7 5 3 11 11 C 1.46493 * 120.00350 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47378 * 89.99882 * 11 2 1 13 13 H 1.08997 * 109.46955 * 305.00559 * 12 11 2 14 14 O 1.42901 * 109.46844 * 65.00245 * 12 11 2 15 15 C 1.52993 * 109.47261 * 184.99961 * 12 11 2 16 16 N 1.46504 * 109.47072 * 180.02562 * 15 12 11 17 17 C 1.46505 * 119.99802 * 270.00185 * 16 15 12 18 18 C 1.34779 * 119.99983 * 90.00220 * 16 15 12 19 19 O 1.21275 * 119.99889 * 6.55574 * 18 16 15 20 20 C 1.50698 * 119.99830 * 186.55994 * 18 16 15 21 21 C 1.52999 * 109.46869 * 186.87185 * 20 18 16 22 22 C 1.52998 * 109.46979 * 179.97438 * 21 20 18 23 23 C 1.53011 * 109.47107 * 60.00281 * 22 21 20 24 24 F 1.39897 * 109.47152 * 59.99472 * 23 22 21 25 25 F 1.39896 * 109.46908 * 180.02562 * 23 22 21 26 26 C 1.53000 * 109.46512 * 300.00002 * 23 22 21 27 27 C 1.52995 * 109.47593 * 59.99872 * 26 23 22 28 28 H 1.08999 * 109.47718 * 269.58771 * 1 2 3 29 29 H 1.09003 * 109.47473 * 29.58857 * 1 2 3 30 30 H 1.09008 * 109.46817 * 149.58439 * 1 2 3 31 31 H 0.97005 * 119.99570 * 179.97438 * 6 5 3 32 32 H 1.09008 * 109.46820 * 330.00229 * 11 2 1 33 33 H 1.09000 * 109.47164 * 210.00314 * 11 2 1 34 34 H 0.96698 * 113.99950 * 59.99886 * 14 12 11 35 35 H 1.09004 * 109.47241 * 60.00328 * 15 12 11 36 36 H 1.08997 * 109.47624 * 300.00188 * 15 12 11 37 37 H 1.08998 * 109.46849 * 264.84871 * 17 16 15 38 38 H 1.08999 * 109.47194 * 24.85076 * 17 16 15 39 39 H 1.08997 * 109.46874 * 144.85176 * 17 16 15 40 40 H 1.09008 * 109.46863 * 306.87112 * 20 18 16 41 41 H 1.09003 * 109.47459 * 60.00247 * 21 20 18 42 42 H 1.08998 * 109.47354 * 299.99638 * 21 20 18 43 43 H 1.09004 * 109.47489 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47530 * 299.99970 * 22 21 20 45 45 H 1.09002 * 109.46772 * 180.02562 * 26 23 22 46 46 H 1.09008 * 109.46930 * 299.99591 * 26 23 22 47 47 H 1.08998 * 109.46685 * 59.99692 * 27 26 23 48 48 H 1.09003 * 109.47004 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1570 1.2279 -0.3869 5 6 1.5488 2.3342 0.4973 6 7 0.4384 2.2451 1.1985 7 14 2.3159 4.0059 0.1714 8 1 3.5513 3.8349 -0.6348 9 1 1.3524 4.8562 -0.5729 10 1 2.6543 4.6556 1.4631 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5063 -1.7557 -1.9807 14 8 3.3210 -0.7733 -2.0810 15 6 3.1062 -3.0943 -1.4429 16 7 3.3509 -3.5176 -2.8239 17 6 2.3266 -4.2710 -3.5516 18 6 4.5184 -3.2139 -3.4250 19 8 5.4115 -2.6962 -2.7884 20 6 4.7140 -3.5176 -4.8880 21 6 6.1669 -3.2372 -5.2772 22 6 6.3656 -3.5462 -6.7625 23 6 5.4348 -2.6631 -7.5961 24 9 5.7303 -1.3169 -7.3561 25 9 5.6161 -2.9460 -8.9541 26 6 3.9820 -2.9435 -7.2068 27 6 3.7832 -2.6347 -5.7216 28 1 -0.3634 -0.0074 1.0276 29 1 -0.3634 0.8937 -0.5074 30 1 -0.3633 -0.8863 -0.5203 31 1 0.0188 3.0476 1.5464 32 1 1.6084 -2.0281 0.5148 33 1 3.1499 -1.1380 0.5144 34 1 4.1837 -0.6817 -1.6538 35 1 2.4438 -3.8096 -0.9553 36 1 4.0525 -3.0496 -0.9039 37 1 2.5309 -5.3382 -3.4657 38 1 1.3461 -4.0535 -3.1280 39 1 2.3407 -3.9817 -4.6024 40 1 4.4835 -4.5665 -5.0753 41 1 6.8300 -3.8666 -4.6837 42 1 6.3973 -2.1885 -5.0900 43 1 7.4006 -3.3460 -7.0400 44 1 6.1353 -4.5950 -6.9495 45 1 3.3188 -2.3148 -7.8009 46 1 3.7517 -3.9924 -7.3938 47 1 4.0135 -1.5858 -5.5347 48 1 2.7480 -2.8340 -5.4444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755804755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:23 Heat of formation + Delta-G solvation = -190.991687 kcal Electronic energy + Delta-G solvation = -30833.260014 eV Core-core repulsion = 26365.553735 eV Total energy + Delta-G solvation = -4467.706279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.95203 -47.96086 -41.35067 -39.02070 -37.88183 -36.76669 -36.01712 -33.33250 -32.25495 -31.76909 -30.54913 -28.10257 -27.81574 -26.90482 -24.55526 -24.18685 -23.25544 -22.11426 -21.27073 -20.08836 -18.81392 -18.38114 -18.12044 -17.78604 -17.58200 -17.20834 -16.83383 -16.66442 -16.39763 -16.06566 -15.37772 -15.30672 -15.16919 -14.90655 -14.75671 -14.60833 -14.39791 -14.28708 -13.90537 -13.79418 -13.70304 -13.51112 -13.17541 -13.17481 -12.96884 -12.82656 -12.73641 -12.55819 -12.50549 -12.43702 -12.24363 -12.16346 -12.07981 -11.86266 -11.81345 -11.69895 -11.19568 -11.05886 -10.68955 -10.53019 -9.49460 -8.64476 -7.82520 -5.28295 1.42123 1.44399 1.55169 1.68994 2.12301 2.51289 2.81859 3.12409 3.25029 3.31819 3.41908 3.57610 3.73769 3.77408 3.86490 3.88206 4.07106 4.10480 4.23899 4.27521 4.32110 4.34093 4.50615 4.56575 4.61957 4.65944 4.71044 4.80104 4.82424 4.83296 4.86643 4.91644 4.95609 4.97073 5.05526 5.23674 5.26788 5.32462 5.36593 5.60568 5.64477 5.71889 6.36911 6.50331 6.91579 7.18651 7.29310 7.89846 8.32186 9.21689 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003016 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.774042 B = 9283.066127 C =10267.618037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.612 5.612 3 C -0.240 4.240 4 H 0.064 0.936 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.961 3.039 8 H -0.274 1.274 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.121 3.879 12 C 0.084 3.916 13 H 0.082 0.918 14 O -0.563 6.563 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.057 3.943 18 C 0.516 3.484 19 O -0.581 6.581 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.148 4.148 23 C 0.272 3.728 24 F -0.221 7.221 25 F -0.211 7.211 26 C -0.148 4.148 27 C -0.112 4.112 28 H 0.000 1.000 29 H 0.016 0.984 30 H 0.032 0.968 31 H 0.246 0.754 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.367 0.633 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.045 0.955 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -22.088 -17.498 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.334 5.334 3 C -0.370 4.370 4 H 0.082 0.918 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.790 3.210 8 H -0.198 1.198 9 H -0.219 1.219 10 H -0.217 1.217 11 C -0.006 4.006 12 C 0.022 3.978 13 H 0.100 0.900 14 O -0.367 6.367 15 C -0.034 4.034 16 N -0.340 5.340 17 C -0.084 4.084 18 C 0.305 3.695 19 O -0.460 6.460 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.186 4.186 23 C 0.236 3.764 24 F -0.202 7.202 25 F -0.192 7.192 26 C -0.185 4.185 27 C -0.149 4.149 28 H 0.019 0.981 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.213 0.787 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.147 0.853 45 H 0.110 0.890 46 H 0.152 0.848 47 H 0.064 0.936 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.681 -21.626 -17.520 28.406 hybrid contribution 0.681 1.773 0.559 1.980 sum 6.362 -19.853 -16.961 26.876 Atomic orbital electron populations 1.20520 0.82873 0.96478 0.96988 1.43975 1.01939 1.01578 1.85927 1.19455 0.98943 0.87041 1.31593 0.91827 1.25705 0.99065 1.01606 0.98844 1.70213 1.22098 1.27495 1.39099 0.85286 0.77846 0.80805 0.77040 1.19847 1.21923 1.21746 1.21543 0.96250 0.87864 0.94922 1.22952 0.92709 0.87344 0.94824 0.90040 1.86517 1.29061 1.64386 1.56751 1.22123 1.01756 0.96095 0.83392 1.47788 1.16784 1.55444 1.14008 1.22373 0.91155 0.96550 0.98303 1.20995 0.81381 0.77005 0.90073 1.90652 1.43226 1.44936 1.67229 1.21408 0.97054 1.03734 0.89861 1.21247 0.95380 1.02401 0.94494 1.22534 1.00148 1.01822 0.94054 1.21644 0.99360 0.77871 0.77509 1.92983 1.95029 1.37932 1.94260 1.92986 1.96772 1.93404 1.36004 1.22536 0.92026 1.07046 0.96904 1.21603 1.00991 0.99278 0.93063 0.98126 0.96491 0.94921 0.94460 0.91512 0.93958 0.78696 0.87049 0.91121 0.89980 0.90214 0.88877 0.84459 0.89658 0.93387 0.89182 0.85321 0.88992 0.84848 0.93599 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.99 127.77 1.15 9.88 16 2 N -0.61 -30.86 2.90 -726.93 -2.11 -32.97 16 3 C -0.24 -13.63 9.20 84.03 0.77 -12.86 16 4 H 0.06 3.63 7.54 -2.91 -0.02 3.61 16 5 C -0.06 -3.39 5.05 84.86 0.43 -2.96 16 6 N -0.94 -57.30 10.85 21.65 0.23 -57.07 16 7 Si 0.96 47.75 29.57 68.60 2.03 49.78 16 8 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 9 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 11 C 0.12 4.69 5.35 86.38 0.46 5.15 16 12 C 0.08 2.76 3.48 30.59 0.11 2.86 16 13 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 14 O -0.56 -22.39 11.51 -148.56 -1.71 -24.10 16 15 C 0.09 2.18 5.16 86.38 0.45 2.63 16 16 N -0.61 -12.45 2.83 -846.76 -2.39 -14.85 16 17 C 0.06 0.62 9.88 127.77 1.26 1.89 16 18 C 0.52 12.46 6.36 87.66 0.56 13.02 16 19 O -0.58 -19.36 14.80 -2.59 -0.04 -19.40 16 20 C -0.10 -1.56 1.71 -11.54 -0.02 -1.58 16 21 C -0.10 -1.72 4.40 30.59 0.13 -1.58 16 22 C -0.15 -1.88 5.45 30.60 0.17 -1.72 16 23 C 0.27 4.62 2.10 30.60 0.06 4.68 16 24 F -0.22 -5.55 16.03 44.97 0.72 -4.83 16 25 F -0.21 -3.94 17.06 44.97 0.77 -3.17 16 26 C -0.15 -1.74 5.45 30.59 0.17 -1.58 16 27 C -0.11 -1.78 4.76 30.59 0.15 -1.63 16 28 H 0.00 0.02 7.63 -2.39 -0.02 0.01 16 29 H 0.02 0.91 7.07 -2.39 -0.02 0.89 16 30 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 31 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 32 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 33 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 34 H 0.37 14.52 8.68 -74.06 -0.64 13.88 16 35 H 0.11 1.99 8.07 -2.38 -0.02 1.97 16 36 H 0.07 1.95 7.34 -2.39 -0.02 1.93 16 37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 39 H 0.09 0.72 4.19 -2.39 -0.01 0.71 16 40 H 0.14 1.02 7.75 -2.38 -0.02 1.00 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.21 7.69 -2.39 -0.02 1.19 16 43 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.13 0.59 8.14 -2.38 -0.02 0.58 16 47 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 48 H 0.11 1.35 5.30 -2.39 -0.01 1.34 16 Total: -1.00 -78.28 380.78 3.67 -74.61 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.32 Total: 15.79 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.84 Total: 16.20 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.27 Total: -104.89 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.75 Total: -43.50 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.49 Total: -8.00 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -78.28 3.67 -74.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755804755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.382 kcal (2) G-P(sol) polarization free energy of solvation -78.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds