Wall clock time and date at job start Tue Mar 31 2020 18:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46966 * 2 1 4 4 C 1.36741 * 127.13419 * 276.15707 * 3 2 1 5 5 C 1.50696 * 126.34640 * 359.95018 * 4 3 2 6 6 H 1.08997 * 109.47721 * 359.97438 * 5 4 3 7 7 C 1.52999 * 109.47108 * 119.99845 * 5 4 3 8 8 C 1.53005 * 109.46890 * 239.99312 * 5 4 3 9 9 C 1.50701 * 109.46925 * 175.00266 * 8 5 4 10 10 H 1.07998 * 120.00116 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00011 * 180.02562 * 9 8 5 12 12 N 1.31510 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99698 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47223 * 90.00104 * 13 11 9 15 15 H 1.48500 * 109.47320 * 210.00236 * 13 11 9 16 16 H 1.48499 * 109.47502 * 330.00123 * 13 11 9 17 17 N 1.30291 * 107.30274 * 179.97438 * 4 3 2 18 18 N 1.28532 * 110.05341 * 359.73332 * 17 4 3 19 19 C 1.31219 * 109.86150 * 0.44733 * 18 17 4 20 20 N 1.38577 * 126.47494 * 179.82431 * 19 18 17 21 21 C 1.46902 * 111.00055 * 103.14333 * 20 19 18 22 22 C 1.46901 * 110.99657 * 339.18803 * 20 19 18 23 23 C 1.50696 * 109.46875 * 189.99935 * 22 20 19 24 24 N 1.31127 * 126.55563 * 89.71263 * 23 22 20 25 25 C 1.34491 * 105.62220 * 179.91610 * 24 23 22 26 26 C 1.50700 * 126.29047 * 180.12647 * 25 24 23 27 27 N 1.29947 * 107.42162 * 0.35297 * 25 24 23 28 28 O 1.21306 * 110.25163 * 359.77369 * 27 25 24 29 29 H 1.08998 * 109.47092 * 183.78897 * 1 2 3 30 30 H 1.09006 * 109.46775 * 303.78695 * 1 2 3 31 31 H 1.08996 * 109.47262 * 63.78635 * 1 2 3 32 32 H 1.09002 * 109.46992 * 239.99798 * 2 1 3 33 33 H 1.09007 * 109.46979 * 119.99669 * 2 1 3 34 34 H 1.09000 * 109.47474 * 59.99556 * 7 5 4 35 35 H 1.09003 * 109.47470 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47271 * 300.00009 * 7 5 4 37 37 H 1.08997 * 109.47279 * 295.00512 * 8 5 4 38 38 H 1.08998 * 109.46602 * 55.00891 * 8 5 4 39 39 H 0.96998 * 119.99529 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.46826 * 66.15553 * 21 20 19 41 41 H 1.08996 * 109.46993 * 186.16326 * 21 20 19 42 42 H 1.09004 * 109.46825 * 306.15595 * 21 20 19 43 43 H 1.08999 * 109.47382 * 309.99765 * 22 20 19 44 44 H 1.09007 * 109.47123 * 70.00312 * 22 20 19 45 45 H 1.08999 * 109.47092 * 270.24192 * 26 25 24 46 46 H 1.09001 * 109.46821 * 30.24403 * 26 25 24 47 47 H 1.09003 * 109.46754 * 150.24014 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1833 2.1985 -1.0838 5 6 1.8953 1.8458 -2.5204 6 1 1.5280 0.8211 -2.5764 7 6 0.8359 2.7990 -3.0770 8 6 3.1787 1.9729 -3.3437 9 6 2.9204 1.5032 -4.7522 10 1 1.9392 1.1491 -5.0320 11 6 3.9370 1.5246 -5.6834 12 7 3.7114 1.1152 -6.9126 13 14 5.6343 2.1363 -5.1992 14 1 6.4481 0.9975 -4.7033 15 1 6.2983 2.7415 -6.3817 16 1 5.5058 3.1565 -4.1278 17 7 2.6360 3.3385 -0.6443 18 7 2.7620 3.2992 0.6342 19 6 2.4025 2.1192 1.0816 20 7 2.4064 1.7030 2.4034 21 6 1.0464 1.7011 2.9588 22 6 3.3052 2.5351 3.2145 23 6 3.4748 1.9115 4.5759 24 7 4.3864 1.0363 4.9260 25 6 4.1531 0.7698 6.2234 26 6 4.9358 -0.1795 7.0937 27 7 3.1259 1.4775 6.5875 28 8 2.7213 2.1405 5.6556 29 1 -0.3633 -1.0254 0.0679 30 1 -0.3633 0.5715 0.8542 31 1 -0.3633 0.4539 -0.9219 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.2035 3.8236 -3.0211 35 1 0.6279 2.5442 -4.1163 36 1 -0.0784 2.7086 -2.4905 37 1 3.4977 3.0150 -3.3610 38 1 3.9607 1.3608 -2.8943 39 1 4.4268 1.1299 -7.5676 40 1 0.4482 0.9439 2.4521 41 1 1.0896 1.4770 4.0246 42 1 0.5926 2.6812 2.8118 43 1 4.2760 2.6061 2.7240 44 1 2.8786 3.5324 3.3223 45 1 4.4982 -1.1757 7.0297 46 1 5.9708 -0.2146 6.7536 47 1 4.9045 0.1655 8.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772198403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:56 Heat of formation + Delta-G solvation = 154.479094 kcal Electronic energy + Delta-G solvation = -29135.021434 eV Core-core repulsion = 25165.277829 eV Total energy + Delta-G solvation = -3969.743605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.96040 -42.87809 -38.23451 -36.41869 -35.88815 -35.13158 -33.42097 -32.21968 -30.63538 -29.73375 -29.21691 -28.60007 -27.56473 -25.69169 -24.28783 -23.89296 -23.75399 -22.20041 -21.40843 -20.59123 -19.22875 -18.59308 -17.76928 -17.39354 -16.91763 -16.57450 -16.06864 -15.50465 -15.05539 -14.80935 -14.30592 -14.18655 -14.10282 -13.98038 -13.92937 -13.52910 -13.15820 -13.10838 -12.98905 -12.77062 -12.57902 -12.35030 -12.19264 -12.03186 -11.75466 -11.56575 -11.45056 -11.36426 -11.20889 -11.06462 -10.84544 -10.56518 -10.33878 -10.15923 -10.10625 -10.00596 -9.76530 -9.48019 -9.20142 -8.56113 -8.36990 -6.07528 -4.06354 0.67297 1.77927 1.86089 2.17735 2.49160 3.05322 3.24037 3.32563 3.40967 3.49374 3.49500 3.65498 4.40518 4.45541 4.47646 4.56306 4.68526 4.71040 4.80673 4.95352 4.97011 4.99769 5.04440 5.09409 5.23593 5.24806 5.25623 5.29452 5.37500 5.40888 5.50476 5.52569 5.63831 5.80839 5.89841 5.91443 6.03038 6.12109 6.21922 6.56362 6.59923 6.67360 6.95069 7.13891 7.16837 7.37205 7.72554 7.78916 8.46030 8.94515 8.96502 9.54956 11.04963 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002696 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.983608 B =10383.962090 C =11089.436280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.468 5.468 4 C 0.219 3.781 5 C 0.007 3.993 6 H 0.079 0.921 7 C -0.127 4.127 8 C 0.000 4.000 9 C -0.519 4.519 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.872 3.128 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.261 1.261 17 N -0.283 5.283 18 N -0.316 5.316 19 C 0.326 3.674 20 N -0.451 5.451 21 C 0.016 3.984 22 C 0.166 3.834 23 C 0.190 3.810 24 N -0.460 5.460 25 C 0.168 3.832 26 C -0.063 4.063 27 N -0.384 5.384 28 O 0.077 5.923 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -3.071 25.363 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.162 5.162 4 C -0.048 4.048 5 C -0.014 4.014 6 H 0.097 0.903 7 C -0.185 4.185 8 C -0.038 4.038 9 C -0.557 4.557 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.539 5.539 13 Si 0.699 3.301 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.185 1.185 17 N -0.122 5.122 18 N -0.161 5.161 19 C -0.030 4.030 20 N -0.177 5.177 21 C -0.131 4.131 22 C 0.037 3.963 23 C -0.031 4.031 24 N -0.195 5.195 25 C -0.105 4.105 26 C -0.121 4.121 27 N -0.093 5.093 28 O 0.018 5.982 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.150 0.850 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.393 -2.468 26.002 26.485 hybrid contribution 0.234 -0.463 0.152 0.541 sum -4.159 -2.931 26.154 26.644 Atomic orbital electron populations 1.22241 0.93979 1.03363 1.03313 1.21912 0.95580 0.79101 1.05522 1.46332 1.50146 1.13722 1.06008 1.25655 0.99626 0.87301 0.92205 1.19793 0.99966 0.99681 0.81932 0.90253 1.21690 0.95585 0.99523 1.01709 1.19607 0.90947 0.98092 0.95146 1.21001 0.98939 1.43271 0.92467 0.90555 1.24939 0.98731 0.94586 0.94777 1.69894 1.33230 1.47554 1.03255 0.86879 0.84719 0.79932 0.78520 1.20421 1.21296 1.18512 1.74022 1.17606 1.18903 1.01664 1.74550 1.22289 1.14218 1.04995 1.21904 1.05262 0.88918 0.86947 1.58293 1.10753 1.51762 0.96859 1.22768 0.86892 1.02687 1.00733 1.20369 1.00584 0.93596 0.81742 1.28466 0.87518 0.93910 0.93234 1.71953 1.23681 1.13426 1.10403 1.25983 0.94359 0.99744 0.90422 1.20158 0.99220 0.95789 0.96967 1.74648 1.14904 1.09413 1.10309 1.85313 1.47135 1.50150 1.15578 0.90166 0.92195 0.91114 0.87940 0.88332 0.92061 0.90082 0.94749 0.94964 0.97194 0.92663 0.89903 0.90228 0.92986 0.84975 0.88474 0.89223 0.88864 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.13 37.16 0.38 -1.10 16 2 C 0.10 1.09 6.29 -4.04 -0.03 1.07 16 3 N -0.47 -6.80 2.81 -114.08 -0.32 -7.13 16 4 C 0.22 3.91 6.58 -154.02 -1.01 2.89 16 5 C 0.01 0.14 2.71 -91.77 -0.25 -0.11 16 6 H 0.08 1.37 7.10 -51.93 -0.37 1.00 16 7 C -0.13 -2.24 8.99 37.16 0.33 -1.91 16 8 C 0.00 0.01 3.50 -27.88 -0.10 -0.09 16 9 C -0.52 -13.89 8.96 -34.44 -0.31 -14.19 16 10 H 0.08 2.13 7.30 -52.49 -0.38 1.75 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 13 Si 0.87 21.69 27.47 -169.99 -4.67 17.03 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.28 -5.57 12.18 32.99 0.40 -5.16 16 18 N -0.32 -5.46 11.50 30.31 0.35 -5.12 16 19 C 0.33 4.69 6.84 -318.88 -2.18 2.51 16 20 N -0.45 -5.01 4.72 -183.76 -0.87 -5.88 16 21 C 0.02 0.14 9.46 60.07 0.57 0.71 16 22 C 0.17 1.67 5.01 -4.98 -0.02 1.65 16 23 C 0.19 1.98 7.09 -13.06 -0.09 1.88 16 24 N -0.46 -5.34 11.55 -9.86 -0.11 -5.45 16 25 C 0.17 1.72 8.22 -156.37 -1.28 0.43 16 26 C -0.06 -0.39 10.51 36.01 0.38 -0.02 16 27 N -0.38 -4.25 12.16 30.91 0.38 -3.87 16 28 O 0.08 0.80 10.46 18.09 0.19 0.99 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 6.08 -51.93 -0.32 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.12 7.51 -51.93 -0.39 0.73 16 33 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.52 6.95 -51.93 -0.36 1.15 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 38 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 0.65 5.72 -51.93 -0.30 0.36 16 41 H 0.08 0.62 6.37 -51.93 -0.33 0.29 16 42 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.13 1.44 8.05 -51.93 -0.42 1.03 16 44 H 0.10 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -33.54 386.77 -8.79 -42.33 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -7.02 Total: -3.07 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.72 Total: -4.35 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.60 Total: -58.74 kcal Atomic # 8 Polarization: 0.80 SS G_CDS: 0.19 Total: 0.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.54 -8.79 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772198403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.813 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds