Wall clock time and date at job start Tue Mar 31 2020 18:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46966 * 2 1 4 4 C 1.36741 * 127.13419 * 276.15707 * 3 2 1 5 5 C 1.50696 * 126.34640 * 359.95018 * 4 3 2 6 6 H 1.08997 * 109.47721 * 359.97438 * 5 4 3 7 7 C 1.52999 * 109.47108 * 119.99845 * 5 4 3 8 8 C 1.53005 * 109.46890 * 239.99312 * 5 4 3 9 9 C 1.50701 * 109.46925 * 175.00266 * 8 5 4 10 10 H 1.07998 * 120.00116 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00011 * 180.02562 * 9 8 5 12 12 N 1.31510 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99698 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47223 * 90.00104 * 13 11 9 15 15 H 1.48500 * 109.47320 * 210.00236 * 13 11 9 16 16 H 1.48499 * 109.47502 * 330.00123 * 13 11 9 17 17 N 1.30291 * 107.30274 * 179.97438 * 4 3 2 18 18 N 1.28532 * 110.05341 * 359.73332 * 17 4 3 19 19 C 1.31219 * 109.86150 * 0.44733 * 18 17 4 20 20 N 1.38577 * 126.47494 * 179.82431 * 19 18 17 21 21 C 1.46902 * 111.00055 * 103.14333 * 20 19 18 22 22 C 1.46901 * 110.99657 * 339.18803 * 20 19 18 23 23 C 1.50696 * 109.46875 * 189.99935 * 22 20 19 24 24 N 1.31127 * 126.55563 * 89.71263 * 23 22 20 25 25 C 1.34491 * 105.62220 * 179.91610 * 24 23 22 26 26 C 1.50700 * 126.29047 * 180.12647 * 25 24 23 27 27 N 1.29947 * 107.42162 * 0.35297 * 25 24 23 28 28 O 1.21306 * 110.25163 * 359.77369 * 27 25 24 29 29 H 1.08998 * 109.47092 * 183.78897 * 1 2 3 30 30 H 1.09006 * 109.46775 * 303.78695 * 1 2 3 31 31 H 1.08996 * 109.47262 * 63.78635 * 1 2 3 32 32 H 1.09002 * 109.46992 * 239.99798 * 2 1 3 33 33 H 1.09007 * 109.46979 * 119.99669 * 2 1 3 34 34 H 1.09000 * 109.47474 * 59.99556 * 7 5 4 35 35 H 1.09003 * 109.47470 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47271 * 300.00009 * 7 5 4 37 37 H 1.08997 * 109.47279 * 295.00512 * 8 5 4 38 38 H 1.08998 * 109.46602 * 55.00891 * 8 5 4 39 39 H 0.96998 * 119.99529 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.46826 * 66.15553 * 21 20 19 41 41 H 1.08996 * 109.46993 * 186.16326 * 21 20 19 42 42 H 1.09004 * 109.46825 * 306.15595 * 21 20 19 43 43 H 1.08999 * 109.47382 * 309.99765 * 22 20 19 44 44 H 1.09007 * 109.47123 * 70.00312 * 22 20 19 45 45 H 1.08999 * 109.47092 * 270.24192 * 26 25 24 46 46 H 1.09001 * 109.46821 * 30.24403 * 26 25 24 47 47 H 1.09003 * 109.46754 * 150.24014 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1833 2.1985 -1.0838 5 6 1.8953 1.8458 -2.5204 6 1 1.5280 0.8211 -2.5764 7 6 0.8359 2.7990 -3.0770 8 6 3.1787 1.9729 -3.3437 9 6 2.9204 1.5032 -4.7522 10 1 1.9392 1.1491 -5.0320 11 6 3.9370 1.5246 -5.6834 12 7 3.7114 1.1152 -6.9126 13 14 5.6343 2.1363 -5.1992 14 1 6.4481 0.9975 -4.7033 15 1 6.2983 2.7415 -6.3817 16 1 5.5058 3.1565 -4.1278 17 7 2.6360 3.3385 -0.6443 18 7 2.7620 3.2992 0.6342 19 6 2.4025 2.1192 1.0816 20 7 2.4064 1.7030 2.4034 21 6 1.0464 1.7011 2.9588 22 6 3.3052 2.5351 3.2145 23 6 3.4748 1.9115 4.5759 24 7 4.3864 1.0363 4.9260 25 6 4.1531 0.7698 6.2234 26 6 4.9358 -0.1795 7.0937 27 7 3.1259 1.4775 6.5875 28 8 2.7213 2.1405 5.6556 29 1 -0.3633 -1.0254 0.0679 30 1 -0.3633 0.5715 0.8542 31 1 -0.3633 0.4539 -0.9219 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.2035 3.8236 -3.0211 35 1 0.6279 2.5442 -4.1163 36 1 -0.0784 2.7086 -2.4905 37 1 3.4977 3.0150 -3.3610 38 1 3.9607 1.3608 -2.8943 39 1 4.4268 1.1299 -7.5676 40 1 0.4482 0.9439 2.4521 41 1 1.0896 1.4770 4.0246 42 1 0.5926 2.6812 2.8118 43 1 4.2760 2.6061 2.7240 44 1 2.8786 3.5324 3.3223 45 1 4.4982 -1.1757 7.0297 46 1 5.9708 -0.2146 6.7536 47 1 4.9045 0.1655 8.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772198403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:55 Heat of formation + Delta-G solvation = 133.588986 kcal Electronic energy + Delta-G solvation = -29135.927297 eV Core-core repulsion = 25165.277829 eV Total energy + Delta-G solvation = -3970.649468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.75185 -44.10214 -39.17593 -37.23014 -37.17854 -36.47237 -34.41851 -34.07172 -31.56632 -30.72880 -30.19970 -29.42215 -29.26349 -26.65501 -25.66488 -24.99260 -24.60512 -23.52047 -22.51225 -21.63514 -20.61632 -19.44320 -19.05562 -18.57487 -18.26884 -17.64571 -17.14839 -16.50895 -16.26615 -15.98938 -15.63998 -15.38199 -15.09918 -14.91764 -14.86984 -14.55602 -14.50238 -14.05113 -13.88270 -13.81264 -13.56442 -13.47048 -13.10177 -13.07626 -12.97889 -12.90763 -12.65211 -12.47963 -12.40581 -12.26357 -12.17050 -11.97772 -11.84173 -11.72543 -11.53268 -11.25358 -11.19252 -11.07621 -10.73561 -10.62331 -9.57002 -8.26159 -6.27384 -0.13617 0.69211 0.94022 1.24123 1.33564 1.38400 1.50241 1.59707 1.75841 2.37280 2.47588 2.61317 2.96093 3.09730 3.35304 3.58231 3.67732 3.79234 3.87240 3.95242 4.02540 4.25348 4.28842 4.34349 4.36346 4.40183 4.44767 4.50172 4.53367 4.56362 4.62361 4.65341 4.68733 4.83011 4.85945 5.00330 5.06297 5.07255 5.12077 5.23928 5.25282 5.28572 5.33581 5.42086 5.57310 5.69226 6.07014 6.29775 6.78739 7.01158 7.36589 7.69506 8.89132 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002696 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.983608 B =10383.962090 C =11089.436280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.464 5.464 4 C 0.207 3.793 5 C 0.016 3.984 6 H 0.094 0.906 7 C -0.120 4.120 8 C 0.007 3.993 9 C -0.511 4.511 10 H 0.056 0.944 11 C 0.017 3.983 12 N -0.943 5.943 13 Si 0.928 3.072 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.260 1.260 17 N -0.318 5.318 18 N -0.343 5.343 19 C 0.348 3.652 20 N -0.450 5.450 21 C 0.017 3.983 22 C 0.168 3.832 23 C 0.198 3.802 24 N -0.484 5.484 25 C 0.165 3.835 26 C -0.064 4.064 27 N -0.400 5.400 28 O 0.077 5.923 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.005 0.995 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -4.030 27.970 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.028 4.028 3 N -0.157 5.157 4 C -0.061 4.061 5 C -0.005 4.005 6 H 0.112 0.888 7 C -0.178 4.178 8 C -0.032 4.032 9 C -0.550 4.550 10 H 0.075 0.925 11 C -0.181 4.181 12 N -0.583 5.583 13 Si 0.754 3.246 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.184 1.184 17 N -0.157 5.157 18 N -0.188 5.188 19 C -0.009 4.009 20 N -0.176 5.176 21 C -0.129 4.129 22 C 0.040 3.960 23 C -0.024 4.024 24 N -0.219 5.219 25 C -0.108 4.108 26 C -0.122 4.122 27 N -0.110 5.110 28 O 0.020 5.980 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.756 -3.436 28.631 29.226 hybrid contribution 0.289 -0.228 -0.543 0.656 sum -4.467 -3.664 28.088 28.676 Atomic orbital electron populations 1.22224 0.92078 1.05043 1.02915 1.22265 0.97149 0.77117 1.06270 1.46470 1.49568 1.14610 1.05045 1.25168 1.00864 0.87786 0.92322 1.19531 0.97838 1.00823 0.82300 0.88792 1.21588 0.96568 0.98443 1.01161 1.19444 0.93260 0.96547 0.93901 1.21271 0.97875 1.41717 0.94095 0.92546 1.25692 1.02330 0.95220 0.94831 1.70007 1.34422 1.49545 1.04364 0.85982 0.80849 0.79606 0.78204 1.19528 1.20894 1.18424 1.73931 1.18546 1.20267 1.02964 1.74469 1.24151 1.15927 1.04210 1.22143 1.02690 0.88043 0.88060 1.58431 1.12291 1.51394 0.95471 1.22855 0.85377 1.03286 1.01385 1.20352 1.00121 0.94153 0.81403 1.28368 0.87325 0.93511 0.93159 1.71977 1.24362 1.14195 1.11358 1.26656 0.94137 0.99642 0.90324 1.20372 0.99175 0.95627 0.97026 1.74646 1.15641 1.10095 1.10600 1.85298 1.47061 1.50156 1.15463 0.87569 0.91559 0.92375 0.88194 0.86609 0.93312 0.91696 0.91824 0.96563 0.97626 0.92564 0.88708 0.89050 0.92777 0.85943 0.87076 0.87801 0.88085 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.13 71.98 0.73 -1.62 16 2 C 0.09 1.77 6.29 86.38 0.54 2.31 16 3 N -0.46 -12.67 2.81 -514.83 -1.45 -14.11 16 4 C 0.21 7.21 6.58 137.64 0.91 8.12 16 5 C 0.02 0.59 2.71 -11.54 -0.03 0.56 16 6 H 0.09 3.16 7.10 -2.39 -0.02 3.14 16 7 C -0.12 -4.18 8.99 71.98 0.65 -3.54 16 8 C 0.01 0.32 3.50 29.85 0.10 0.43 16 9 C -0.51 -27.76 8.96 25.60 0.23 -27.53 16 10 H 0.06 3.23 7.30 -2.91 -0.02 3.21 16 11 C 0.02 0.97 5.47 84.66 0.46 1.43 16 12 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 13 Si 0.93 45.07 27.47 68.60 1.88 46.96 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 16 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 17 N -0.32 -12.40 12.18 -49.54 -0.60 -13.00 16 18 N -0.34 -11.61 11.50 -58.01 -0.67 -12.27 16 19 C 0.35 9.44 6.84 260.11 1.78 11.21 16 20 N -0.45 -9.03 4.72 -735.29 -3.47 -12.50 16 21 C 0.02 0.25 9.46 127.69 1.21 1.46 16 22 C 0.17 3.14 5.01 85.56 0.43 3.57 16 23 C 0.20 3.79 7.09 88.38 0.63 4.42 16 24 N -0.48 -10.48 11.55 -303.17 -3.50 -13.98 16 25 C 0.16 3.09 8.22 138.46 1.14 4.22 16 26 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 27 N -0.40 -8.17 12.16 -60.28 -0.73 -8.90 16 28 O 0.08 1.47 10.46 74.79 0.78 2.25 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.87 6.08 -2.38 -0.01 0.85 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.98 7.51 -2.39 -0.02 1.96 16 33 H 0.12 1.81 8.09 -2.38 -0.02 1.80 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.06 2.45 6.95 -2.39 -0.02 2.44 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 38 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 40 H 0.09 1.17 5.72 -2.39 -0.01 1.15 16 41 H 0.09 1.15 6.37 -2.39 -0.02 1.14 16 42 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 43 H 0.12 2.57 8.05 -2.39 -0.02 2.55 16 44 H 0.11 1.78 8.12 -2.38 -0.02 1.76 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.82 386.77 2.99 -69.83 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.93 Total: 7.57 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 9.52 Total: 5.13 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -10.13 Total: -131.75 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.78 Total: 2.25 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -72.82 2.99 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772198403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.423 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds