Wall clock time and date at job start Tue Mar 31 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47610 * 2 1 4 4 C 1.36734 * 127.13274 * 84.19091 * 3 2 1 5 5 C 1.50703 * 126.35210 * 0.02562 * 4 3 2 6 6 H 1.08996 * 109.47024 * 0.02562 * 5 4 3 7 7 C 1.53001 * 109.47461 * 239.99939 * 5 4 3 8 8 C 1.53007 * 109.47085 * 119.99999 * 5 4 3 9 9 C 1.50697 * 109.47120 * 185.00221 * 8 5 4 10 10 H 1.08006 * 119.99844 * 0.02562 * 9 8 5 11 11 C 1.37877 * 120.00057 * 179.97438 * 9 8 5 12 12 N 1.31516 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99981 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46878 * 90.00327 * 13 11 9 15 15 H 1.48502 * 109.47183 * 209.99720 * 13 11 9 16 16 H 1.48495 * 109.47417 * 330.00220 * 13 11 9 17 17 N 1.30298 * 107.30496 * 180.28959 * 4 3 2 18 18 N 1.28529 * 110.04824 * 359.55695 * 17 4 3 19 19 C 1.31220 * 109.85987 * 0.45796 * 18 17 4 20 20 N 1.38580 * 126.46818 * 179.69605 * 19 18 17 21 21 C 1.46903 * 110.99784 * 256.43666 * 20 19 18 22 22 C 1.46897 * 111.00625 * 20.38898 * 20 19 18 23 23 C 1.50691 * 109.47383 * 169.99915 * 22 20 19 24 24 N 1.31137 * 126.55223 * 89.71221 * 23 22 20 25 25 C 1.34492 * 105.61728 * 179.91634 * 24 23 22 26 26 C 1.50700 * 126.29006 * 180.12496 * 25 24 23 27 27 N 1.29953 * 107.42258 * 0.35196 * 25 24 23 28 28 O 1.21295 * 110.25174 * 359.77501 * 27 25 24 29 29 H 1.08999 * 109.47329 * 174.34779 * 1 2 3 30 30 H 1.08999 * 109.47318 * 294.35651 * 1 2 3 31 31 H 1.09001 * 109.46635 * 54.35216 * 1 2 3 32 32 H 1.08995 * 109.47626 * 239.99645 * 2 1 3 33 33 H 1.09001 * 109.47047 * 119.99966 * 2 1 3 34 34 H 1.08996 * 109.47311 * 300.00203 * 7 5 4 35 35 H 1.08997 * 109.46705 * 59.99778 * 7 5 4 36 36 H 1.08998 * 109.46981 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.47045 * 65.00342 * 8 5 4 38 38 H 1.09005 * 109.46702 * 305.00319 * 8 5 4 39 39 H 0.97003 * 119.99934 * 180.02562 * 12 11 9 40 40 H 1.08993 * 109.46974 * 53.69998 * 21 20 19 41 41 H 1.09003 * 109.47033 * 173.70438 * 21 20 19 42 42 H 1.09005 * 109.46674 * 293.70514 * 21 20 19 43 43 H 1.09004 * 109.47391 * 290.00456 * 22 20 19 44 44 H 1.09000 * 109.46832 * 50.00014 * 22 20 19 45 45 H 1.08993 * 109.47367 * 270.24730 * 26 25 24 46 46 H 1.09004 * 109.46680 * 30.24018 * 26 25 24 47 47 H 1.08996 * 109.47337 * 150.23874 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1896 2.1962 1.0845 5 6 1.9094 1.8409 2.5220 6 1 1.5419 0.8163 2.5780 7 6 0.8535 2.7935 3.0864 8 6 3.1973 1.9656 3.3385 9 6 2.9466 1.4933 4.7474 10 1 1.9667 1.1391 5.0319 11 6 3.9683 1.5122 5.6730 12 7 5.1616 1.9430 5.3264 13 14 3.6573 0.9274 7.4196 14 1 3.9355 -0.5284 7.5111 15 1 4.5487 1.6613 8.3535 16 1 2.2406 1.1844 7.7828 17 7 2.6346 3.3390 0.6442 18 7 2.7639 3.2985 -0.6339 19 6 2.3962 2.1213 -1.0822 20 7 2.3919 1.7082 -2.4050 21 6 1.0282 1.7050 -2.9510 22 6 3.2835 2.5436 -3.2205 23 6 3.4449 1.9234 -4.5843 24 7 2.6949 2.1453 -5.6369 25 6 3.2109 1.3819 -6.6166 26 6 2.7031 1.2837 -8.0320 27 7 4.2248 0.7407 -6.1170 28 8 4.3762 1.0377 -4.9508 29 1 -0.3634 -1.0226 -0.1012 30 1 -0.3634 0.4238 0.9362 31 1 -0.3632 0.5989 -0.8351 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.2214 3.8180 3.0304 35 1 -0.0640 2.7046 2.5047 36 1 0.6512 2.5367 4.1262 37 1 3.5169 3.0075 3.3561 38 1 3.9766 1.3541 2.8835 39 1 5.8806 1.9560 5.9775 40 1 0.5726 2.6830 -2.7964 41 1 1.0646 1.4856 -4.0181 42 1 0.4355 0.9437 -2.4436 43 1 2.8544 3.5404 -3.3230 44 1 4.2575 2.6154 -2.7364 45 1 1.9582 0.4907 -8.0967 46 1 2.2503 2.2319 -8.3221 47 1 3.5333 1.0578 -8.7011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772198404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:00 Heat of formation + Delta-G solvation = 152.543019 kcal Electronic energy + Delta-G solvation = -29040.894021 eV Core-core repulsion = 25071.066462 eV Total energy + Delta-G solvation = -3969.827559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.89327 -42.76167 -38.17662 -36.33428 -35.78269 -35.00342 -33.36079 -32.20574 -30.55488 -29.71184 -29.06369 -28.47130 -27.00140 -25.52836 -24.22386 -23.96596 -23.78993 -22.22640 -21.49090 -20.50236 -19.19785 -18.48442 -17.70217 -17.22499 -16.54141 -16.38424 -15.94442 -15.61037 -14.91293 -14.73043 -14.53479 -14.35847 -13.98622 -13.90246 -13.76172 -13.29873 -13.09850 -13.07813 -12.87821 -12.66316 -12.40427 -12.33130 -12.03068 -11.80957 -11.71861 -11.52225 -11.37456 -11.29576 -11.07569 -10.95964 -10.76640 -10.50886 -10.48927 -10.28768 -10.00567 -9.92328 -9.77864 -9.28736 -9.13675 -8.38502 -8.23873 -6.01720 -4.05533 0.74162 1.79471 1.97774 2.27062 2.58008 3.17953 3.24924 3.30109 3.37403 3.39343 3.58880 3.73588 4.42257 4.47820 4.56934 4.66278 4.73091 4.80896 4.89576 4.96977 5.01717 5.05160 5.11517 5.17402 5.27664 5.33538 5.35914 5.40722 5.44861 5.46858 5.52812 5.61023 5.63779 5.88073 5.98708 6.01574 6.11490 6.22107 6.31506 6.64979 6.69985 6.85421 7.00525 7.27669 7.60551 7.76390 7.84223 7.97010 8.32856 8.99855 9.09199 9.58130 11.09239 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002406 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.753167 B =11635.729595 C =12036.018514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.470 5.470 4 C 0.224 3.776 5 C -0.003 4.003 6 H 0.073 0.927 7 C -0.126 4.126 8 C 0.038 3.962 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 N -0.282 5.282 18 N -0.315 5.315 19 C 0.323 3.677 20 N -0.453 5.453 21 C 0.018 3.982 22 C 0.163 3.837 23 C 0.196 3.804 24 N -0.476 5.476 25 C 0.165 3.835 26 C -0.062 4.062 27 N -0.383 5.383 28 O 0.090 5.910 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.014 0.986 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -3.922 -22.239 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.164 5.164 4 C -0.043 4.043 5 C -0.024 4.024 6 H 0.091 0.909 7 C -0.184 4.184 8 C 0.000 4.000 9 C -0.559 4.559 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.198 1.198 17 N -0.120 5.120 18 N -0.160 5.160 19 C -0.033 4.033 20 N -0.178 5.178 21 C -0.130 4.130 22 C 0.034 3.966 23 C -0.025 4.025 24 N -0.212 5.212 25 C -0.107 4.107 26 C -0.120 4.120 27 N -0.091 5.091 28 O 0.031 5.969 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.143 0.857 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.600 -3.344 -22.936 24.722 hybrid contribution -0.665 -1.086 0.994 1.616 sum -9.265 -4.430 -21.942 24.226 Atomic orbital electron populations 1.22239 0.94148 1.03180 1.03312 1.21872 0.95430 0.79292 1.05422 1.46316 1.50415 1.13668 1.05966 1.25656 0.99402 0.87140 0.92101 1.20026 1.01015 0.98959 0.82362 0.90864 1.21676 0.95637 0.99856 1.01195 1.19118 0.88988 0.98698 0.93200 1.21122 0.96563 1.43253 0.94984 0.92342 1.25005 0.95167 0.95366 0.98748 1.69980 1.01600 1.46407 1.34808 0.86604 0.78170 0.78653 0.84616 1.20769 1.21231 1.19816 1.74038 1.17619 1.18817 1.01543 1.74547 1.21997 1.14338 1.05114 1.21908 1.05456 0.89115 0.86869 1.58292 1.11104 1.51593 0.96843 1.22762 0.86509 1.02336 1.01350 1.20364 1.00422 0.93740 0.82093 1.28459 0.85789 0.90125 0.98111 1.71924 1.26512 1.23763 0.98993 1.25915 0.91768 0.93263 0.99802 1.20138 1.01997 1.04590 0.85297 1.74679 1.20230 1.21645 0.92512 1.85336 1.45586 1.45674 1.20284 0.90297 0.91213 0.92182 0.88432 0.88016 0.92009 0.95027 0.90607 0.94914 0.96740 0.92898 0.93294 0.89558 0.90287 0.87536 0.85690 0.89324 0.88977 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.10 37.16 0.38 -1.17 16 2 C 0.10 1.16 6.29 -4.04 -0.03 1.13 16 3 N -0.47 -7.19 2.81 -114.09 -0.32 -7.51 16 4 C 0.22 4.20 6.58 -154.02 -1.01 3.19 16 5 C 0.00 -0.05 2.71 -91.77 -0.25 -0.30 16 6 H 0.07 1.30 7.09 -51.93 -0.37 0.93 16 7 C -0.13 -2.26 8.99 37.16 0.33 -1.93 16 8 C 0.04 0.95 4.43 -27.88 -0.12 0.82 16 9 C -0.52 -13.80 8.41 -34.44 -0.29 -14.09 16 10 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 13 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 N -0.28 -5.84 12.18 32.99 0.40 -5.44 16 18 N -0.32 -5.76 11.49 30.31 0.35 -5.41 16 19 C 0.32 4.90 6.84 -318.89 -2.18 2.72 16 20 N -0.45 -5.34 4.73 -183.77 -0.87 -6.21 16 21 C 0.02 0.17 9.46 60.07 0.57 0.74 16 22 C 0.16 1.74 5.01 -4.98 -0.02 1.71 16 23 C 0.20 2.11 7.16 -13.06 -0.09 2.02 16 24 N -0.48 -5.14 10.56 -9.87 -0.10 -5.24 16 25 C 0.17 1.68 8.22 -156.37 -1.28 0.39 16 26 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 27 N -0.38 -4.54 12.16 30.90 0.38 -4.17 16 28 O 0.09 1.07 11.31 18.09 0.20 1.27 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.53 6.09 -51.93 -0.32 0.22 16 32 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.10 1.17 7.49 -51.93 -0.39 0.78 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.39 6.95 -51.93 -0.36 1.03 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 41 H 0.09 0.80 6.27 -51.93 -0.33 0.48 16 42 H 0.08 0.70 5.69 -51.93 -0.30 0.40 16 43 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 44 H 0.13 1.34 8.04 -51.93 -0.42 0.92 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -33.04 390.13 -9.14 -42.18 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.05 Total: -2.48 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.73 Total: -3.22 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.57 Total: -59.53 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.04 -9.14 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772198404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.725 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds