Wall clock time and date at job start Tue Mar 31 2020 18:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47610 * 2 1 4 4 C 1.36734 * 127.13274 * 84.19091 * 3 2 1 5 5 C 1.50703 * 126.35210 * 0.02562 * 4 3 2 6 6 H 1.08996 * 109.47024 * 0.02562 * 5 4 3 7 7 C 1.53001 * 109.47461 * 239.99939 * 5 4 3 8 8 C 1.53007 * 109.47085 * 119.99999 * 5 4 3 9 9 C 1.50697 * 109.47120 * 185.00221 * 8 5 4 10 10 H 1.08006 * 119.99844 * 0.02562 * 9 8 5 11 11 C 1.37877 * 120.00057 * 179.97438 * 9 8 5 12 12 N 1.31516 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99981 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46878 * 90.00327 * 13 11 9 15 15 H 1.48502 * 109.47183 * 209.99720 * 13 11 9 16 16 H 1.48495 * 109.47417 * 330.00220 * 13 11 9 17 17 N 1.30298 * 107.30496 * 180.28959 * 4 3 2 18 18 N 1.28529 * 110.04824 * 359.55695 * 17 4 3 19 19 C 1.31220 * 109.85987 * 0.45796 * 18 17 4 20 20 N 1.38580 * 126.46818 * 179.69605 * 19 18 17 21 21 C 1.46903 * 110.99784 * 256.43666 * 20 19 18 22 22 C 1.46897 * 111.00625 * 20.38898 * 20 19 18 23 23 C 1.50691 * 109.47383 * 169.99915 * 22 20 19 24 24 N 1.31137 * 126.55223 * 89.71221 * 23 22 20 25 25 C 1.34492 * 105.61728 * 179.91634 * 24 23 22 26 26 C 1.50700 * 126.29006 * 180.12496 * 25 24 23 27 27 N 1.29953 * 107.42258 * 0.35196 * 25 24 23 28 28 O 1.21295 * 110.25174 * 359.77501 * 27 25 24 29 29 H 1.08999 * 109.47329 * 174.34779 * 1 2 3 30 30 H 1.08999 * 109.47318 * 294.35651 * 1 2 3 31 31 H 1.09001 * 109.46635 * 54.35216 * 1 2 3 32 32 H 1.08995 * 109.47626 * 239.99645 * 2 1 3 33 33 H 1.09001 * 109.47047 * 119.99966 * 2 1 3 34 34 H 1.08996 * 109.47311 * 300.00203 * 7 5 4 35 35 H 1.08997 * 109.46705 * 59.99778 * 7 5 4 36 36 H 1.08998 * 109.46981 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.47045 * 65.00342 * 8 5 4 38 38 H 1.09005 * 109.46702 * 305.00319 * 8 5 4 39 39 H 0.97003 * 119.99934 * 180.02562 * 12 11 9 40 40 H 1.08993 * 109.46974 * 53.69998 * 21 20 19 41 41 H 1.09003 * 109.47033 * 173.70438 * 21 20 19 42 42 H 1.09005 * 109.46674 * 293.70514 * 21 20 19 43 43 H 1.09004 * 109.47391 * 290.00456 * 22 20 19 44 44 H 1.09000 * 109.46832 * 50.00014 * 22 20 19 45 45 H 1.08993 * 109.47367 * 270.24730 * 26 25 24 46 46 H 1.09004 * 109.46680 * 30.24018 * 26 25 24 47 47 H 1.08996 * 109.47337 * 150.23874 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1896 2.1962 1.0845 5 6 1.9094 1.8409 2.5220 6 1 1.5419 0.8163 2.5780 7 6 0.8535 2.7935 3.0864 8 6 3.1973 1.9656 3.3385 9 6 2.9466 1.4933 4.7474 10 1 1.9667 1.1391 5.0319 11 6 3.9683 1.5122 5.6730 12 7 5.1616 1.9430 5.3264 13 14 3.6573 0.9274 7.4196 14 1 3.9355 -0.5284 7.5111 15 1 4.5487 1.6613 8.3535 16 1 2.2406 1.1844 7.7828 17 7 2.6346 3.3390 0.6442 18 7 2.7639 3.2985 -0.6339 19 6 2.3962 2.1213 -1.0822 20 7 2.3919 1.7082 -2.4050 21 6 1.0282 1.7050 -2.9510 22 6 3.2835 2.5436 -3.2205 23 6 3.4449 1.9234 -4.5843 24 7 2.6949 2.1453 -5.6369 25 6 3.2109 1.3819 -6.6166 26 6 2.7031 1.2837 -8.0320 27 7 4.2248 0.7407 -6.1170 28 8 4.3762 1.0377 -4.9508 29 1 -0.3634 -1.0226 -0.1012 30 1 -0.3634 0.4238 0.9362 31 1 -0.3632 0.5989 -0.8351 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.2214 3.8180 3.0304 35 1 -0.0640 2.7046 2.5047 36 1 0.6512 2.5367 4.1262 37 1 3.5169 3.0075 3.3561 38 1 3.9766 1.3541 2.8835 39 1 5.8806 1.9560 5.9775 40 1 0.5726 2.6830 -2.7964 41 1 1.0646 1.4856 -4.0181 42 1 0.4355 0.9437 -2.4436 43 1 2.8544 3.5404 -3.3230 44 1 4.2575 2.6154 -2.7364 45 1 1.9582 0.4907 -8.0967 46 1 2.2503 2.2319 -8.3221 47 1 3.5333 1.0578 -8.7011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772198404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:59 Heat of formation + Delta-G solvation = 132.546419 kcal Electronic energy + Delta-G solvation = -29041.761139 eV Core-core repulsion = 25071.066462 eV Total energy + Delta-G solvation = -3970.694677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.72713 -44.07592 -39.19780 -37.20189 -37.10537 -36.43460 -34.39344 -34.00798 -31.54852 -30.50157 -30.28975 -29.32609 -28.85199 -26.59692 -25.78630 -25.01116 -24.71515 -23.68676 -22.51424 -21.60986 -20.63343 -19.38183 -18.62838 -18.52700 -18.21622 -17.53206 -17.12151 -16.63614 -16.47215 -15.89525 -15.75623 -15.24080 -15.08487 -14.94119 -14.59980 -14.47692 -14.33426 -13.99811 -13.78572 -13.69423 -13.59866 -13.40608 -13.12701 -12.94863 -12.87651 -12.79614 -12.63990 -12.50121 -12.37744 -12.26118 -12.23034 -12.19437 -11.92559 -11.52238 -11.50026 -11.20507 -11.14842 -11.07120 -10.59401 -10.51948 -9.55500 -8.13754 -6.24984 -0.12787 0.72069 0.94121 1.25489 1.45628 1.47155 1.57739 1.63760 1.79309 2.40777 2.46102 2.66998 3.00446 3.20522 3.40638 3.60815 3.67203 3.82744 3.87808 3.96845 4.04108 4.25465 4.31188 4.35919 4.42929 4.45098 4.46333 4.54278 4.57212 4.58781 4.63844 4.66580 4.71435 4.80329 4.87684 5.04715 5.08413 5.12805 5.16602 5.26441 5.29195 5.36737 5.47712 5.49549 5.73166 5.86833 6.08953 6.23518 6.91108 7.01163 7.44058 7.72765 8.98548 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002406 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.753167 B =11635.729595 C =12036.018514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.465 5.465 4 C 0.210 3.790 5 C 0.009 3.991 6 H 0.095 0.905 7 C -0.118 4.118 8 C 0.049 3.951 9 C -0.526 4.526 10 H 0.077 0.923 11 C -0.003 4.003 12 N -0.936 5.936 13 Si 0.965 3.035 14 H -0.273 1.273 15 H -0.291 1.291 16 H -0.256 1.256 17 N -0.323 5.323 18 N -0.346 5.346 19 C 0.345 3.655 20 N -0.449 5.449 21 C 0.022 3.978 22 C 0.165 3.835 23 C 0.201 3.799 24 N -0.482 5.482 25 C 0.168 3.832 26 C -0.063 4.063 27 N -0.405 5.405 28 O 0.073 5.927 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.073 0.927 37 H -0.009 1.009 38 H -0.021 1.021 39 H 0.261 0.739 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 -5.702 -23.335 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.158 5.158 4 C -0.059 4.059 5 C -0.012 4.012 6 H 0.114 0.886 7 C -0.176 4.176 8 C 0.011 3.989 9 C -0.564 4.564 10 H 0.095 0.905 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.790 3.210 14 H -0.199 1.199 15 H -0.217 1.217 16 H -0.180 1.180 17 N -0.161 5.161 18 N -0.190 5.190 19 C -0.013 4.013 20 N -0.175 5.175 21 C -0.125 4.125 22 C 0.036 3.964 23 C -0.020 4.020 24 N -0.218 5.218 25 C -0.104 4.104 26 C -0.121 4.121 27 N -0.116 5.116 28 O 0.019 5.981 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.009 0.991 38 H -0.002 1.002 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.218 -5.143 -24.033 27.016 hybrid contribution 0.155 -0.553 1.158 1.292 sum -11.063 -5.696 -22.875 26.041 Atomic orbital electron populations 1.22220 0.91902 1.05058 1.02956 1.22269 0.97271 0.77084 1.06218 1.46472 1.49795 1.14659 1.04877 1.25295 1.00500 0.87582 0.92498 1.19750 0.98431 1.00655 0.82327 0.88646 1.21585 0.96341 0.98166 1.01473 1.18863 0.90906 0.95177 0.93948 1.21574 0.97165 1.42150 0.95492 0.90492 1.26006 0.94867 0.95601 1.03605 1.70152 1.02825 1.48301 1.36397 0.85444 0.78676 0.78182 0.78721 1.19858 1.21694 1.17976 1.73939 1.18734 1.20545 1.02926 1.74449 1.23974 1.16267 1.04313 1.22164 1.02806 0.88221 0.88062 1.58449 1.12531 1.51148 0.95345 1.22813 0.85115 1.02735 1.01825 1.20333 1.00129 0.93875 0.82020 1.28345 0.85704 0.89917 0.98014 1.71959 1.26654 1.24003 0.99139 1.26686 0.90818 0.91889 1.01045 1.20385 1.02818 1.05966 0.82893 1.74691 1.21434 1.22881 0.92588 1.85317 1.46063 1.46133 1.20636 0.87365 0.92144 0.91819 0.86675 0.88245 0.94050 0.91808 0.90850 0.99070 1.00237 0.93050 0.93550 0.88710 0.88811 0.86987 0.86179 0.87607 0.87651 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.10 71.98 0.73 -1.71 16 2 C 0.09 1.89 6.29 86.38 0.54 2.44 16 3 N -0.46 -13.85 2.81 -514.86 -1.45 -15.30 16 4 C 0.21 7.98 6.58 137.64 0.91 8.88 16 5 C 0.01 0.36 2.71 -11.54 -0.03 0.33 16 6 H 0.10 3.27 7.09 -2.39 -0.02 3.25 16 7 C -0.12 -4.18 8.99 71.98 0.65 -3.53 16 8 C 0.05 2.56 4.43 29.85 0.13 2.69 16 9 C -0.53 -28.12 8.41 25.60 0.22 -27.90 16 10 H 0.08 3.75 7.06 -2.91 -0.02 3.73 16 11 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 12 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 13 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 N -0.32 -13.86 12.18 -49.54 -0.60 -14.46 16 18 N -0.35 -12.90 11.49 -58.01 -0.67 -13.56 16 19 C 0.34 10.30 6.84 260.12 1.78 12.08 16 20 N -0.45 -10.03 4.73 -735.31 -3.48 -13.50 16 21 C 0.02 0.37 9.46 127.69 1.21 1.58 16 22 C 0.17 3.45 5.01 85.55 0.43 3.88 16 23 C 0.20 4.16 7.16 88.38 0.63 4.79 16 24 N -0.48 -9.64 10.56 -303.18 -3.20 -12.84 16 25 C 0.17 3.13 8.22 138.46 1.14 4.27 16 26 C -0.06 -0.58 10.51 71.24 0.75 0.17 16 27 N -0.41 -9.23 12.16 -60.30 -0.73 -9.96 16 28 O 0.07 1.71 11.31 74.81 0.85 2.56 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.91 6.09 -2.39 -0.01 0.90 16 32 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 33 H 0.10 2.11 7.49 -2.39 -0.02 2.09 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.61 6.95 -2.39 -0.02 2.59 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.09 1.53 6.27 -2.39 -0.01 1.51 16 42 H 0.09 1.36 5.69 -2.38 -0.01 1.34 16 43 H 0.11 2.25 8.12 -2.38 -0.02 2.23 16 44 H 0.12 2.63 8.04 -2.39 -0.02 2.61 16 45 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -74.59 390.13 3.55 -71.05 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.98 Total: 9.83 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 9.54 Total: 8.24 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -9.85 Total: -136.64 kcal Atomic # 8 Polarization: 1.71 SS G_CDS: 0.85 Total: 2.56 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.59 3.55 -71.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772198404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.593 kcal (2) G-P(sol) polarization free energy of solvation -74.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds