Wall clock time and date at job start Tue Mar 31 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99899 * 2 1 4 4 C 1.50703 * 109.46749 * 293.95277 * 3 2 1 5 5 H 1.07994 * 120.00370 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99615 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00149 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99794 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47296 * 89.99981 * 8 6 4 10 10 H 1.48505 * 109.47072 * 209.99655 * 8 6 4 11 11 H 1.48493 * 109.47498 * 329.99679 * 8 6 4 12 12 C 1.46898 * 111.00344 * 123.95240 * 2 1 3 13 13 C 1.53006 * 109.46819 * 66.04432 * 12 2 1 14 14 H 1.08998 * 109.47349 * 305.00492 * 13 12 2 15 15 O 1.42903 * 109.46882 * 65.00457 * 13 12 2 16 16 C 1.52999 * 109.46791 * 185.00096 * 13 12 2 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 13 12 18 18 C 1.39934 * 120.00166 * 180.02562 * 17 16 13 19 19 C 1.38877 * 120.19469 * 359.97438 * 18 17 16 20 20 C 1.37887 * 120.27116 * 179.59239 * 19 18 17 21 21 C 1.39275 * 120.33968 * 0.37297 * 20 19 18 22 22 C 1.38858 * 118.99980 * 0.13227 * 21 20 19 23 23 C 1.37718 * 120.85791 * 359.65138 * 22 21 20 24 24 C 1.51657 * 107.05580 * 179.45216 * 22 21 20 25 25 C 1.54708 * 101.93069 * 344.48793 * 24 22 21 26 26 C 1.52995 * 110.74734 * 267.01428 * 25 24 22 27 27 C 1.53005 * 110.90247 * 143.73706 * 25 24 22 28 28 O 1.36271 * 129.78991 * 180.56812 * 21 20 19 29 29 H 1.08996 * 109.47574 * 296.04494 * 1 2 3 30 30 H 1.08994 * 109.46974 * 56.05059 * 1 2 3 31 31 H 1.09004 * 109.46928 * 176.04588 * 1 2 3 32 32 H 1.08996 * 109.47106 * 53.95217 * 3 2 1 33 33 H 1.08999 * 109.47036 * 173.95087 * 3 2 1 34 34 H 0.97002 * 120.00562 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47261 * 306.05252 * 12 2 1 36 36 H 1.08998 * 109.47373 * 186.04646 * 12 2 1 37 37 H 0.96702 * 114.00010 * 59.99655 * 15 13 12 38 38 H 1.09000 * 109.47280 * 60.00790 * 16 13 12 39 39 H 1.08998 * 109.47498 * 300.00305 * 16 13 12 40 40 H 0.97004 * 119.99631 * 0.02562 * 17 16 13 41 41 H 1.08002 * 119.86737 * 359.87605 * 19 18 17 42 42 H 1.08002 * 119.83263 * 180.34922 * 20 19 18 43 43 H 1.07998 * 120.04296 * 180.30304 * 23 22 21 44 44 H 1.08992 * 110.94270 * 226.32477 * 24 22 21 45 45 H 1.09007 * 110.93267 * 102.64343 * 24 22 21 46 46 H 1.08996 * 109.47205 * 174.82476 * 26 25 24 47 47 H 1.09000 * 109.47012 * 294.82532 * 26 25 24 48 48 H 1.09004 * 109.46872 * 54.82286 * 26 25 24 49 49 H 1.08999 * 109.47569 * 305.08389 * 27 25 24 50 50 H 1.08996 * 109.46975 * 65.08578 * 27 25 24 51 51 H 1.09004 * 109.46579 * 185.08533 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 1.7143 3.9390 -2.6618 8 14 2.9998 4.2761 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7260 -0.3226 11 1 2.6293 3.7756 1.1171 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2956 -2.7696 -0.1800 16 6 2.0700 -3.0198 2.2131 17 7 1.7220 -4.4339 2.0528 18 6 2.0256 -5.3486 3.0674 19 6 2.6571 -4.9204 4.2278 20 6 2.9494 -5.8188 5.2321 21 6 2.6213 -7.1648 5.0893 22 6 1.9995 -7.5860 3.9214 23 6 1.7017 -6.6914 2.9175 24 6 1.7820 -9.0816 4.0476 25 6 2.7171 -9.4424 5.2261 26 6 4.0930 -9.8731 4.7140 27 6 2.0986 -10.5367 6.0984 28 8 2.8081 -8.2041 5.9507 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3445 0.1083 34 1 1.9888 4.8551 -2.8239 35 1 1.5611 -0.3873 2.0628 36 1 3.0798 -0.6610 1.1756 37 1 3.2602 -2.7166 -0.1360 38 1 1.5634 -2.6179 3.0905 39 1 3.1483 -2.9235 2.3402 40 1 1.2812 -4.7361 1.2432 41 1 2.9163 -3.8786 4.3460 42 1 3.4355 -5.4771 6.1339 43 1 1.2135 -7.0325 2.0166 44 1 2.0861 -9.5976 3.1370 45 1 0.7434 -9.3049 4.2919 46 1 4.7616 -10.0336 5.5597 47 1 3.9960 -10.7989 4.1468 48 1 4.5015 -9.0938 4.0705 49 1 1.1077 -10.2232 6.4265 50 1 2.0158 -11.4577 5.5214 51 1 2.7320 -10.7088 6.9687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819457421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:13 Heat of formation + Delta-G solvation = -48.475669 kcal Electronic energy + Delta-G solvation = -28105.777623 eV Core-core repulsion = 24198.480832 eV Total energy + Delta-G solvation = -3907.296791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45052 -39.01415 -37.92528 -35.90029 -34.63495 -33.95468 -32.51191 -31.61789 -30.69895 -28.83017 -27.89177 -27.60824 -26.66085 -25.95933 -23.84174 -22.56676 -21.48658 -21.31483 -20.63565 -20.15967 -17.49048 -17.23944 -17.08833 -16.63342 -16.12020 -15.97943 -15.65979 -14.97512 -14.61762 -14.52113 -14.42393 -14.20452 -14.14733 -13.73045 -13.58090 -13.45111 -13.22008 -13.07904 -12.75159 -12.71862 -12.65742 -12.40500 -12.33643 -12.27572 -12.04096 -11.72213 -11.40787 -11.32408 -11.19850 -11.04882 -10.92050 -10.81525 -10.58329 -10.39527 -10.10027 -9.70335 -9.60294 -9.29216 -9.02320 -8.59888 -7.41018 -7.24618 -6.07566 -4.05184 1.14112 1.41894 2.99918 3.24978 3.25772 3.33109 3.33752 3.61313 4.10710 4.20598 4.38211 4.39905 4.41895 4.58090 4.63029 4.73052 4.89676 4.96013 5.06974 5.08467 5.10587 5.15674 5.20917 5.24764 5.28462 5.30934 5.35228 5.41223 5.47657 5.48637 5.56790 5.63573 5.77354 5.80261 5.84137 5.96717 6.01595 6.12604 6.14267 6.20151 6.29040 6.39457 6.62424 6.80870 6.93333 6.98215 7.24079 7.53405 7.61491 7.79750 7.83166 8.00380 8.62342 9.01601 9.53621 11.05529 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001713 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.483241 B =16344.442115 C =16705.108813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.103 3.897 14 H 0.103 0.897 15 O -0.543 6.543 16 C 0.093 3.907 17 N -0.739 5.739 18 C 0.199 3.801 19 C -0.167 4.167 20 C -0.088 4.088 21 C 0.041 3.959 22 C -0.124 4.124 23 C -0.149 4.149 24 C -0.101 4.101 25 C 0.102 3.898 26 C -0.162 4.162 27 C -0.141 4.141 28 O -0.301 6.301 29 H 0.010 0.990 30 H 0.082 0.918 31 H 0.049 0.951 32 H -0.012 1.012 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.372 0.628 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.404 0.596 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -28.125 17.352 33.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.548 4.548 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.043 3.957 14 H 0.121 0.879 15 O -0.347 6.347 16 C -0.033 4.033 17 N -0.370 5.370 18 C 0.096 3.904 19 C -0.190 4.190 20 C -0.107 4.107 21 C -0.005 4.005 22 C -0.125 4.125 23 C -0.172 4.172 24 C -0.138 4.138 25 C 0.064 3.936 26 C -0.220 4.220 27 C -0.198 4.198 28 O -0.217 6.217 29 H 0.029 0.971 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.005 0.995 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.219 0.781 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.493 -28.081 16.899 32.808 hybrid contribution 0.658 1.134 1.178 1.762 sum 2.151 -26.948 18.077 32.521 Atomic orbital electron populations 1.22304 0.88265 0.99972 1.00892 1.61859 1.07349 1.16181 1.38983 1.20201 0.94819 0.84033 0.97362 1.21027 1.35718 0.97181 1.00860 0.90062 1.24904 0.95810 0.97349 0.95283 1.69888 1.46834 1.13293 1.23813 0.86868 0.80891 0.79356 0.82643 1.20144 1.21162 1.19386 1.22714 1.00727 0.93568 0.93620 1.22129 0.98254 0.91398 0.83963 0.87936 1.86602 1.23416 1.83732 1.40982 1.22072 1.00287 0.81541 0.99352 1.44517 1.67144 1.05814 1.19487 1.17617 0.94914 0.88870 0.89017 1.20356 1.05481 0.99747 0.93432 1.19973 1.01550 0.89461 0.99712 1.19215 1.01054 0.89731 0.90479 1.20409 1.01194 0.95372 0.95529 1.19656 1.06916 0.90820 0.99769 1.21882 1.00692 0.92186 0.99080 1.22645 0.95387 0.84661 0.90907 1.22186 0.95862 1.02025 1.01891 1.21828 1.01392 0.96625 0.99958 1.86863 1.88990 1.13095 1.32735 0.97122 0.89975 0.93241 0.99471 0.95920 0.92636 0.94954 0.90845 0.78074 0.91601 0.91984 0.76005 0.85371 0.85769 0.86027 0.89241 0.89179 0.91442 0.90922 0.91777 0.91500 0.90494 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.14 60.06 0.55 1.19 16 2 N -0.52 -10.48 4.70 -244.37 -1.15 -11.63 16 3 C 0.16 3.86 3.79 -4.97 -0.02 3.84 16 4 C -0.51 -14.40 9.01 -34.44 -0.31 -14.71 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.02 0.36 4.60 -3.82 -0.02 0.34 16 13 C 0.10 1.27 3.01 -26.73 -0.08 1.19 16 14 H 0.10 1.34 6.34 -51.93 -0.33 1.01 16 15 O -0.54 -7.39 13.03 -35.23 -0.46 -7.85 16 16 C 0.09 0.93 4.58 -4.04 -0.02 0.91 16 17 N -0.74 -7.44 5.64 -58.56 -0.33 -7.77 16 18 C 0.20 2.13 6.66 -83.66 -0.56 1.57 16 19 C -0.17 -1.75 9.30 -39.47 -0.37 -2.12 16 20 C -0.09 -0.94 10.06 -39.32 -0.40 -1.33 16 21 C 0.04 0.47 6.95 -38.97 -0.27 0.19 16 22 C -0.12 -1.27 6.26 -104.11 -0.65 -1.92 16 23 C -0.15 -1.52 9.89 -39.51 -0.39 -1.92 16 24 C -0.10 -0.78 6.18 -26.51 -0.16 -0.94 16 25 C 0.10 0.79 1.26 -89.72 -0.11 0.68 16 26 C -0.16 -1.08 8.85 37.15 0.33 -0.75 16 27 C -0.14 -0.78 8.96 37.16 0.33 -0.45 16 28 O -0.30 -3.32 10.53 -20.61 -0.22 -3.54 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 31 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 32 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 33 H 0.02 0.54 7.36 -51.93 -0.38 0.15 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 37 H 0.37 4.11 9.05 45.56 0.41 4.52 16 38 H 0.07 0.64 7.96 -51.93 -0.41 0.22 16 39 H 0.06 0.59 7.96 -51.93 -0.41 0.17 16 40 H 0.40 4.00 8.37 -40.82 -0.34 3.66 16 41 H 0.13 1.19 6.74 -52.49 -0.35 0.84 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 45 H 0.09 0.61 7.91 -51.92 -0.41 0.20 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 49 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -32.61 404.74 -10.08 -42.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.89 Total: 4.45 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.24 Total: -12.38 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.71 Total: -46.07 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.68 Total: -11.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.61 -10.08 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819457421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.780 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds