Wall clock time and date at job start Tue Mar 31 2020 18:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48492 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47132 * 300.00664 * 3 2 1 6 6 H 1.48502 * 109.47121 * 60.00249 * 3 2 1 7 7 C 1.38809 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.47084 * 125.62760 * 359.97438 * 9 7 2 11 11 C 1.54462 * 107.29682 * 179.00782 * 10 9 7 12 12 C 1.54387 * 102.87248 * 338.49757 * 11 10 9 13 13 C 1.47580 * 125.63169 * 179.97438 * 9 7 2 14 14 C 1.52107 * 110.50977 * 152.62614 * 12 11 10 15 15 C 1.53343 * 109.44748 * 64.11711 * 14 12 11 16 16 N 1.46930 * 108.68810 * 53.29868 * 15 14 12 17 17 C 1.34776 * 120.55256 * 125.65542 * 16 15 14 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99624 * 179.97438 * 17 16 15 20 20 H 1.09001 * 115.57483 * 34.15858 * 19 17 16 21 21 C 1.53297 * 117.53569 * 248.20156 * 19 17 16 22 22 C 1.51576 * 117.53318 * 179.97438 * 19 17 16 23 23 C 1.53981 * 122.50153 * 355.49797 * 22 19 17 24 24 C 1.54635 * 102.01998 * 184.25809 * 23 22 19 25 25 O 1.43341 * 107.68850 * 20.09563 * 24 23 22 26 26 C 1.43935 * 110.11776 * 1.51505 * 25 24 23 27 27 C 1.46931 * 118.88985 * 305.92209 * 16 15 14 28 28 C 1.52106 * 110.51639 * 276.66286 * 12 11 10 29 29 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.87887 * 59.58727 * 10 9 7 31 31 H 1.08993 * 110.00661 * 298.50489 * 10 9 7 32 32 H 1.09006 * 110.73066 * 220.15600 * 11 10 9 33 33 H 1.08995 * 110.73236 * 96.84809 * 11 10 9 34 34 H 1.08996 * 110.37543 * 84.49371 * 13 9 7 35 35 H 1.09003 * 110.37341 * 322.14887 * 13 9 7 36 36 H 1.09000 * 109.47897 * 304.12273 * 14 12 11 37 37 H 1.08999 * 109.47900 * 184.11086 * 14 12 11 38 38 H 1.09000 * 109.59918 * 293.53440 * 15 14 12 39 39 H 1.09000 * 109.73206 * 173.13947 * 15 14 12 40 40 H 1.09001 * 117.53656 * 145.23470 * 21 19 17 41 41 H 1.08996 * 117.53377 * 0.02562 * 21 19 17 42 42 H 1.08997 * 110.92561 * 66.07726 * 23 22 19 43 43 H 1.09006 * 110.92154 * 302.44096 * 23 22 19 44 44 H 1.08993 * 109.81829 * 260.55156 * 24 23 22 45 45 H 1.08997 * 109.87259 * 139.66330 * 24 23 22 46 46 H 1.08999 * 110.34469 * 96.04367 * 26 25 24 47 47 H 1.09002 * 110.34378 * 218.30595 * 26 25 24 48 48 H 1.09006 * 109.59724 * 173.83329 * 27 16 15 49 49 H 1.08990 * 109.60352 * 294.31259 * 27 16 15 50 50 H 1.08996 * 109.47306 * 55.87458 * 28 12 11 51 51 H 1.09005 * 109.47413 * 175.88993 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1381 -2.5323 0.0005 11 6 -0.4505 -4.0448 -0.0254 12 6 0.8500 -4.6549 -0.5912 13 6 1.9347 -3.7323 -0.0016 14 6 1.0296 -6.0813 -0.0945 15 6 -0.1065 -6.9573 -0.6360 16 7 -0.1644 -6.8038 -2.0961 17 6 -0.1095 -7.8833 -2.9012 18 8 -0.0112 -8.9930 -2.4218 19 6 -0.1704 -7.7114 -4.3971 20 1 0.3036 -6.8106 -4.7869 21 6 -1.4216 -8.2247 -5.1191 22 6 -0.1037 -8.9630 -5.2495 23 6 0.1231 -10.3624 -4.6483 24 6 0.2188 -11.2451 -5.9143 25 8 0.5334 -10.3886 -7.0198 26 6 0.6837 -9.0307 -6.5668 27 6 -0.2770 -5.4534 -2.6640 28 6 0.8540 -4.5864 -2.1107 29 1 -0.4850 0.8401 0.0004 30 1 -0.5585 -2.0518 -0.8830 31 1 -0.5564 -2.0829 0.9011 32 1 -1.2932 -4.2534 -0.6846 33 1 -0.6450 -4.4159 0.9807 34 1 2.1813 -4.0379 1.0151 35 1 2.8257 -3.7447 -0.6293 36 1 1.0089 -6.0920 0.9953 37 1 1.9862 -6.4700 -0.4435 38 1 -1.0529 -6.6412 -0.1972 39 1 0.0821 -8.0012 -0.3852 40 1 -1.7711 -7.6610 -5.9840 41 1 -2.2002 -8.6861 -4.5117 42 1 -0.7220 -10.6614 -4.0283 43 1 1.0524 -10.3957 -4.0794 44 1 -0.7351 -11.7417 -6.0915 45 1 1.0050 -11.9895 -5.7885 46 1 1.7353 -8.8038 -6.3917 47 1 0.2623 -8.3390 -7.2962 48 1 -0.1977 -5.5057 -3.7499 49 1 -1.2368 -5.0185 -2.3856 50 1 0.7106 -3.5536 -2.4282 51 1 1.8082 -4.9537 -2.4886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035247521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:12 Heat of formation + Delta-G solvation = -23.971845 kcal Electronic energy + Delta-G solvation = -30111.456411 eV Core-core repulsion = 26205.222185 eV Total energy + Delta-G solvation = -3906.234226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.98620 -39.82551 -38.50018 -36.17109 -35.66717 -33.13272 -31.37281 -30.68152 -30.50235 -28.76086 -28.08254 -26.86012 -24.86621 -23.84710 -23.25455 -22.68133 -22.14101 -20.46021 -20.10452 -19.27876 -17.98593 -17.28554 -16.54195 -16.48656 -16.32947 -15.72889 -15.46512 -15.08372 -14.92316 -14.57372 -14.42930 -13.92660 -13.73974 -13.52147 -13.46690 -13.10047 -12.87651 -12.68087 -12.62970 -12.36452 -12.18461 -11.94152 -11.75314 -11.70474 -11.30229 -11.12468 -11.06925 -10.95151 -10.73426 -10.71536 -10.63118 -10.29566 -10.21022 -10.03721 -9.83089 -9.76468 -9.73413 -9.64843 -9.58934 -8.62335 -8.55394 -6.83278 -5.73049 -3.05838 2.33598 2.86029 3.33927 3.37476 3.43584 3.45629 3.65587 3.99573 4.32278 4.38597 4.47925 4.55399 4.69803 4.88256 4.93384 4.96579 5.03510 5.09372 5.15448 5.21561 5.33887 5.35126 5.37134 5.44953 5.45787 5.48837 5.56247 5.57434 5.59934 5.71252 5.77713 5.86798 5.92543 5.95080 5.96288 6.07882 6.13657 6.18427 6.28600 6.41395 6.52164 6.59818 6.61735 6.68172 6.80415 6.92138 7.37657 7.55461 7.61280 7.81580 8.10762 8.24397 9.21188 9.81417 10.48007 11.38579 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.002482 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.884823 B =11279.437442 C =11804.608875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.137 4.137 12 C -0.071 4.071 13 C 0.146 3.854 14 C -0.116 4.116 15 C 0.115 3.885 16 N -0.600 5.600 17 C 0.544 3.456 18 O -0.545 6.545 19 C -0.169 4.169 20 H 0.130 0.870 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.101 4.101 24 C 0.049 3.951 25 O -0.384 6.384 26 C 0.090 3.910 27 C 0.105 3.895 28 C -0.112 4.112 29 H 0.251 0.749 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -18.250 -9.697 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.154 4.154 15 C -0.007 4.007 16 N -0.332 5.332 17 C 0.333 3.667 18 O -0.424 6.424 19 C -0.190 4.190 20 H 0.148 0.852 21 C -0.164 4.164 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.027 4.027 25 O -0.303 6.303 26 C 0.014 3.986 27 C -0.017 4.017 28 C -0.150 4.150 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.108 0.892 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.884 -18.664 -9.632 21.200 hybrid contribution 0.466 1.320 0.397 1.455 sum -2.417 -17.344 -9.236 19.798 Atomic orbital electron populations 1.69977 1.04829 1.24810 1.57389 1.24781 0.95703 0.97586 1.02452 0.86074 0.78733 0.83922 0.77225 1.20566 1.21802 1.21816 1.19093 0.90421 0.82475 1.43364 0.90543 1.44515 1.01647 0.99785 1.87120 1.21132 0.84285 0.88237 1.00813 1.22934 0.95720 0.99552 0.99314 1.21016 0.97976 0.93542 0.94653 1.21477 0.93952 0.85971 0.96623 1.21727 0.98119 0.94847 1.00726 1.21647 0.99191 1.01143 0.78752 1.48061 1.71726 1.06522 1.06872 1.19500 0.75943 0.84093 0.87212 1.90660 1.50674 1.24532 1.76514 1.22090 1.05646 0.99426 0.91858 0.85219 1.22887 0.90243 1.01522 1.01753 1.22052 1.00898 0.93599 0.97321 1.22402 1.04345 0.90698 0.96410 1.23247 1.00485 0.93256 0.85739 1.88449 1.91997 1.17598 1.32260 1.22663 0.98875 0.84391 0.92703 1.21868 1.00244 0.81386 0.98191 1.21561 0.97483 1.00753 0.95198 0.93884 0.93759 0.94285 0.92269 0.92578 0.96458 0.94554 0.90669 0.91965 0.91321 0.89410 0.87218 0.87814 0.89455 0.89568 0.91365 0.91439 0.91318 0.89508 0.89973 0.90710 0.89248 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.31 55.49 0.57 -25.92 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.12 10.28 -15.07 -0.15 -6.27 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.77 3.39 -170.31 -0.58 -15.34 16 10 C 0.18 4.14 5.00 -2.96 -0.01 4.13 16 11 C -0.14 -2.34 4.92 -25.24 -0.12 -2.47 16 12 C -0.07 -1.11 0.55 -154.11 -0.08 -1.19 16 13 C 0.15 2.88 6.15 -2.87 -0.02 2.86 16 14 C -0.12 -1.54 4.84 -27.01 -0.13 -1.67 16 15 C 0.11 1.43 6.17 -3.63 -0.02 1.41 16 16 N -0.60 -7.31 2.97 -172.87 -0.51 -7.82 16 17 C 0.54 6.78 7.48 -10.99 -0.08 6.70 16 18 O -0.55 -8.12 13.43 5.55 0.07 -8.04 16 19 C -0.17 -1.62 5.05 -92.34 -0.47 -2.09 16 20 H 0.13 1.06 6.55 -51.93 -0.34 0.72 16 21 C -0.13 -1.04 10.07 -27.27 -0.27 -1.32 16 22 C -0.14 -1.29 2.29 -155.10 -0.36 -1.65 16 23 C -0.10 -1.02 4.94 -25.36 -0.13 -1.14 16 24 C 0.05 0.45 7.81 38.02 0.30 0.75 16 25 O -0.38 -4.16 11.37 -35.23 -0.40 -4.56 16 26 C 0.09 0.80 7.65 37.48 0.29 1.09 16 27 C 0.11 1.22 6.01 -3.87 -0.02 1.20 16 28 C -0.11 -1.60 4.84 -27.25 -0.13 -1.73 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.04 1.12 7.38 -51.93 -0.38 0.74 16 31 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 32 H 0.06 0.91 6.19 -51.93 -0.32 0.59 16 33 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 34 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 35 H 0.04 0.71 8.02 -51.93 -0.42 0.30 16 36 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.83 7.62 -51.93 -0.40 0.43 16 39 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.93 7.72 -51.93 -0.40 0.53 16 43 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.77 5.49 -51.93 -0.29 0.49 16 49 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 50 H 0.09 1.51 7.82 -51.93 -0.41 1.10 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -31.14 382.72 -10.24 -41.38 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.62 Total: -0.47 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.52 Total: -1.76 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.52 Total: -49.08 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.33 Total: -12.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.14 -10.24 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035247521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.408 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds