Wall clock time and date at job start Tue Mar 31 2020 19:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79064 * 2 1 4 4 C 1.41386 * 106.84074 * 179.74451 * 3 2 1 5 5 C 1.34513 * 106.84030 * 0.37086 * 4 3 2 6 6 C 1.50695 * 125.78781 * 179.88882 * 5 4 3 7 7 H 1.08999 * 109.47181 * 359.71530 * 6 5 4 8 8 C 1.53006 * 109.47124 * 119.71424 * 6 5 4 9 9 C 1.50703 * 109.47396 * 239.71174 * 6 5 4 10 10 O 1.21275 * 119.99758 * 325.57801 * 9 6 5 11 11 N 1.34772 * 119.99958 * 145.84788 * 9 6 5 12 12 C 1.46931 * 120.63021 * 5.24008 * 11 9 6 13 13 C 1.53624 * 108.53838 * 126.36769 * 12 11 9 14 14 C 1.53036 * 109.24509 * 54.85835 * 13 12 11 15 15 C 1.53007 * 109.45236 * 178.49516 * 14 13 12 16 16 N 1.46502 * 109.47018 * 295.05996 * 15 14 13 17 17 C 1.46504 * 119.99669 * 89.99778 * 16 15 14 18 18 C 1.36931 * 120.00060 * 269.99888 * 16 15 14 19 19 H 1.08002 * 120.00139 * 33.99386 * 18 16 15 20 20 C 1.38814 * 120.00034 * 213.99200 * 18 16 15 21 21 N 1.31621 * 119.99920 * 5.44873 * 20 18 16 22 22 Si 1.86797 * 119.99972 * 185.45603 * 20 18 16 23 23 H 1.48499 * 109.47455 * 89.99982 * 22 20 18 24 24 H 1.48504 * 109.47127 * 210.00107 * 22 20 18 25 25 H 1.48501 * 109.47045 * 329.99510 * 22 20 18 26 26 C 1.53041 * 109.53811 * 298.51042 * 14 13 12 27 27 C 1.46925 * 120.62974 * 185.51986 * 11 9 6 28 28 O 1.34299 * 108.41924 * 359.62453 * 5 4 3 29 29 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47714 * 300.01062 * 1 2 3 31 31 H 1.09005 * 109.47011 * 60.00778 * 1 2 3 32 32 H 1.07999 * 126.57944 * 359.97438 * 3 2 1 33 33 H 1.07997 * 126.57496 * 180.22969 * 4 3 2 34 34 H 1.08995 * 109.46747 * 64.98390 * 8 6 5 35 35 H 1.08996 * 109.47348 * 184.98624 * 8 6 5 36 36 H 1.08995 * 109.47234 * 304.98672 * 8 6 5 37 37 H 1.09001 * 109.58862 * 246.20029 * 12 11 9 38 38 H 1.08997 * 109.58808 * 6.62763 * 12 11 9 39 39 H 1.08998 * 109.63878 * 294.86466 * 13 12 11 40 40 H 1.09001 * 109.43214 * 174.72292 * 13 12 11 41 41 H 1.09001 * 109.46396 * 58.53078 * 14 13 12 42 42 H 1.09000 * 109.46782 * 55.05916 * 15 14 13 43 43 H 1.08999 * 109.47125 * 175.05840 * 15 14 13 44 44 H 1.08993 * 109.47057 * 85.41063 * 17 16 15 45 45 H 1.09000 * 109.46648 * 205.41158 * 17 16 15 46 46 H 1.08994 * 109.47432 * 325.40999 * 17 16 15 47 47 H 0.96997 * 119.99934 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49578 * 301.41064 * 26 14 13 49 49 H 1.09005 * 109.49890 * 181.31621 * 26 14 13 50 50 H 1.09000 * 109.59061 * 353.37439 * 27 11 9 51 51 H 1.09004 * 109.58536 * 113.65694 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 0.0060 5 6 3.5814 -0.7122 0.0010 6 6 4.7705 -1.6379 0.0022 7 1 5.6885 -1.0501 0.0027 8 6 4.7291 -2.5199 1.2518 9 6 4.7315 -2.5075 -1.2280 10 8 3.6666 -2.8754 -1.6769 11 7 5.8801 -2.8809 -1.8260 12 6 7.1793 -2.5450 -1.2274 13 6 7.9988 -3.8363 -1.0827 14 6 8.0946 -4.5282 -2.4444 15 6 8.9417 -5.7957 -2.3134 16 7 10.3169 -5.4301 -1.9652 17 6 10.7108 -5.3162 -0.5586 18 6 11.2342 -5.1948 -2.9543 19 1 10.9218 -4.7430 -3.8841 20 6 12.5657 -5.5371 -2.7618 21 7 12.9283 -6.1842 -1.6745 22 14 13.8427 -5.0790 -4.0458 23 1 14.4002 -3.7386 -3.7334 24 1 14.9360 -6.0841 -4.0371 25 1 13.2073 -5.0505 -5.3877 26 6 6.6916 -4.9005 -2.9291 27 6 5.8570 -3.6262 -3.0919 28 8 2.2924 -1.0894 0.0007 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.9665 2.1204 -0.0004 33 1 4.5211 1.2433 0.0111 34 1 3.8563 -3.1713 1.2078 35 1 5.6334 -3.1266 1.2984 36 1 4.6680 -1.8900 2.1392 37 1 7.7084 -1.8435 -1.8724 38 1 7.0245 -2.0969 -0.2460 39 1 7.5114 -4.5017 -0.3701 40 1 9.0000 -3.5925 -0.7274 41 1 8.5599 -3.8533 -3.1628 42 1 8.5257 -6.4315 -1.5318 43 1 8.9378 -6.3348 -3.2607 44 1 10.9936 -6.2983 -0.1799 45 1 11.5580 -4.6358 -0.4726 46 1 9.8739 -4.9298 0.0229 47 1 13.8586 -6.4236 -1.5402 48 1 6.2164 -5.5558 -2.1991 49 1 6.7623 -5.4141 -3.8880 50 1 4.8296 -3.8917 -3.3411 51 1 6.2782 -3.0101 -3.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692022574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:59 Heat of formation + Delta-G solvation = -7.973208 kcal Electronic energy + Delta-G solvation = -29564.640109 eV Core-core repulsion = 25659.099636 eV Total energy + Delta-G solvation = -3905.540473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.75955 -40.25621 -37.76732 -35.44143 -34.59889 -33.27556 -32.91321 -31.49984 -30.83018 -30.49194 -27.25141 -26.73300 -25.81874 -24.53696 -23.40430 -22.76646 -21.89995 -21.06060 -20.39234 -19.88985 -18.76913 -17.40644 -16.85602 -16.53216 -16.25207 -15.58231 -15.19255 -14.99501 -14.57990 -14.27479 -14.11818 -13.77548 -13.68738 -13.58032 -13.38664 -13.28368 -13.18089 -13.03858 -12.90922 -12.58143 -12.41212 -12.24263 -12.05218 -11.85053 -11.74762 -11.68870 -11.22020 -11.02954 -10.95367 -10.77326 -10.71067 -10.38781 -10.23703 -10.03253 -9.97501 -9.81517 -9.73526 -9.63741 -8.62231 -8.48852 -8.41255 -6.55542 -5.75598 -3.30580 1.54113 2.38044 2.50222 2.81971 3.01697 3.35447 3.42441 3.43530 4.25884 4.33729 4.47723 4.60323 4.75479 4.81441 4.89270 4.98430 5.11617 5.14340 5.17394 5.19586 5.26337 5.38515 5.42954 5.43642 5.44294 5.47830 5.52706 5.65305 5.67896 5.76470 5.84429 5.87622 5.90841 6.00788 6.09119 6.12820 6.24324 6.36625 6.40020 6.44845 6.53337 6.64995 6.83287 6.89995 7.00417 7.07563 7.31604 7.38940 7.68146 7.80943 8.12079 8.48040 9.25763 9.86225 10.41886 11.29871 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002253 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.906854 B =12426.177987 C =12557.987568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.216 4.216 4 C -0.205 4.205 5 C 0.007 3.993 6 C -0.031 4.031 7 H 0.121 0.879 8 C -0.142 4.142 9 C 0.518 3.482 10 O -0.535 6.535 11 N -0.605 5.605 12 C 0.101 3.899 13 C -0.123 4.123 14 C -0.107 4.107 15 C 0.157 3.843 16 N -0.598 5.598 17 C 0.158 3.842 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C -0.127 4.127 27 C 0.113 3.887 28 O -0.152 6.152 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.017 0.983 45 H 0.046 0.954 46 H 0.001 0.999 47 H 0.253 0.747 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 12.438 5.533 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.236 4.236 4 C -0.224 4.224 5 C -0.044 4.044 6 C -0.052 4.052 7 H 0.138 0.862 8 C -0.200 4.200 9 C 0.305 3.695 10 O -0.411 6.411 11 N -0.338 5.338 12 C -0.021 4.021 13 C -0.161 4.161 14 C -0.129 4.129 15 C 0.029 3.971 16 N -0.320 5.320 17 C 0.013 3.987 18 C -0.388 4.388 19 H 0.079 0.921 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.165 4.165 27 C -0.009 4.009 28 O -0.047 6.047 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.019 0.981 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.454 11.848 5.355 24.236 hybrid contribution 1.119 0.498 -0.696 1.408 sum -19.335 12.346 4.659 23.409 Atomic orbital electron populations 1.20288 0.85281 1.04073 1.03336 1.22486 0.94129 0.84360 1.05542 1.21486 0.92572 0.99320 1.10178 1.21537 0.98406 0.93415 1.09088 1.21594 0.82919 0.93339 1.06527 1.19955 0.94050 0.95511 0.95691 0.86168 1.21766 1.03785 0.99533 0.94888 1.20312 0.83842 0.80685 0.84622 1.90705 1.29467 1.55732 1.65206 1.48163 1.05872 1.55561 1.24243 1.22076 0.83228 0.98667 0.98159 1.22098 1.00479 0.95063 0.98478 1.21833 0.94111 1.00737 0.96174 1.20761 0.85692 0.92247 0.98381 1.43740 1.05547 1.80376 1.02386 1.20849 0.95223 0.98957 0.83650 1.19074 0.88579 1.34141 0.96962 0.92050 1.25309 0.98583 0.97795 0.97352 1.70003 1.16323 1.41724 1.26727 0.86313 0.81445 0.77593 0.81493 1.21449 1.21692 1.20401 1.21931 0.96278 0.96432 1.01893 1.21633 1.01698 0.93059 0.84494 1.84053 1.15852 1.34433 1.70357 0.90544 0.89806 0.89770 0.83595 0.83443 0.91283 0.90743 0.90875 0.91068 0.90228 0.92359 0.89058 0.91145 0.94987 0.93540 0.96509 0.93533 0.98104 0.93701 0.91974 0.90912 0.89548 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.15 16 2 C -0.01 -0.16 7.32 -35.63 -0.26 -0.42 16 3 C -0.22 -2.26 10.81 -39.70 -0.43 -2.69 16 4 C -0.21 -2.26 10.78 -39.70 -0.43 -2.69 16 5 C 0.01 0.09 5.55 -35.63 -0.20 -0.11 16 6 C -0.03 -0.34 2.32 -92.92 -0.22 -0.56 16 7 H 0.12 1.04 6.17 -51.93 -0.32 0.72 16 8 C -0.14 -1.38 9.08 37.16 0.34 -1.04 16 9 C 0.52 7.28 6.68 -10.99 -0.07 7.21 16 10 O -0.53 -9.45 15.41 -5.32 -0.08 -9.53 16 11 N -0.61 -7.88 2.97 -172.50 -0.51 -8.39 16 12 C 0.10 1.17 6.18 -3.48 -0.02 1.15 16 13 C -0.12 -1.75 4.45 -26.39 -0.12 -1.87 16 14 C -0.11 -1.70 2.36 -90.58 -0.21 -1.92 16 15 C 0.16 3.08 5.17 -4.04 -0.02 3.06 16 16 N -0.60 -14.32 2.71 -181.12 -0.49 -14.81 16 17 C 0.16 3.68 8.21 59.85 0.49 4.17 16 18 C -0.26 -6.85 9.54 -15.06 -0.14 -6.99 16 19 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 20 C 0.01 0.24 5.17 -17.43 -0.09 0.15 16 21 N -0.90 -26.01 11.10 55.49 0.62 -25.39 16 22 Si 0.90 21.42 29.56 -169.99 -5.02 16.40 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C -0.13 -1.73 5.36 -26.61 -0.14 -1.88 16 27 C 0.11 1.50 6.44 -3.71 -0.02 1.48 16 28 O -0.15 -2.11 10.07 -5.16 -0.05 -2.16 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.73 5.33 -51.93 -0.28 0.46 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.46 5.69 -51.93 -0.30 1.16 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.02 0.43 7.72 -51.93 -0.40 0.03 16 45 H 0.05 1.17 7.26 -51.93 -0.38 0.80 16 46 H 0.00 0.01 5.76 -51.93 -0.30 -0.29 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -32.82 399.74 -9.32 -42.14 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.62 Total: -1.19 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.18 Total: -3.09 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.39 Total: -48.60 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.13 Total: -11.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.82 -9.32 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692022574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.169 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds