Wall clock time and date at job start Tue Mar 31 2020 19:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79064 * 2 1 4 4 C 1.41386 * 106.84074 * 179.74451 * 3 2 1 5 5 C 1.34513 * 106.84030 * 0.37086 * 4 3 2 6 6 C 1.50695 * 125.78781 * 179.88882 * 5 4 3 7 7 H 1.08999 * 109.47181 * 359.71530 * 6 5 4 8 8 C 1.53006 * 109.47124 * 119.71424 * 6 5 4 9 9 C 1.50703 * 109.47396 * 239.71174 * 6 5 4 10 10 O 1.21275 * 119.99758 * 325.57801 * 9 6 5 11 11 N 1.34772 * 119.99958 * 145.84788 * 9 6 5 12 12 C 1.46931 * 120.63021 * 5.24008 * 11 9 6 13 13 C 1.53624 * 108.53838 * 126.36769 * 12 11 9 14 14 C 1.53036 * 109.24509 * 54.85835 * 13 12 11 15 15 C 1.53007 * 109.45236 * 178.49516 * 14 13 12 16 16 N 1.46502 * 109.47018 * 295.05996 * 15 14 13 17 17 C 1.46504 * 119.99669 * 89.99778 * 16 15 14 18 18 C 1.36931 * 120.00060 * 269.99888 * 16 15 14 19 19 H 1.08002 * 120.00139 * 33.99386 * 18 16 15 20 20 C 1.38814 * 120.00034 * 213.99200 * 18 16 15 21 21 N 1.31621 * 119.99920 * 5.44873 * 20 18 16 22 22 Si 1.86797 * 119.99972 * 185.45603 * 20 18 16 23 23 H 1.48499 * 109.47455 * 89.99982 * 22 20 18 24 24 H 1.48504 * 109.47127 * 210.00107 * 22 20 18 25 25 H 1.48501 * 109.47045 * 329.99510 * 22 20 18 26 26 C 1.53041 * 109.53811 * 298.51042 * 14 13 12 27 27 C 1.46925 * 120.62974 * 185.51986 * 11 9 6 28 28 O 1.34299 * 108.41924 * 359.62453 * 5 4 3 29 29 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47714 * 300.01062 * 1 2 3 31 31 H 1.09005 * 109.47011 * 60.00778 * 1 2 3 32 32 H 1.07999 * 126.57944 * 359.97438 * 3 2 1 33 33 H 1.07997 * 126.57496 * 180.22969 * 4 3 2 34 34 H 1.08995 * 109.46747 * 64.98390 * 8 6 5 35 35 H 1.08996 * 109.47348 * 184.98624 * 8 6 5 36 36 H 1.08995 * 109.47234 * 304.98672 * 8 6 5 37 37 H 1.09001 * 109.58862 * 246.20029 * 12 11 9 38 38 H 1.08997 * 109.58808 * 6.62763 * 12 11 9 39 39 H 1.08998 * 109.63878 * 294.86466 * 13 12 11 40 40 H 1.09001 * 109.43214 * 174.72292 * 13 12 11 41 41 H 1.09001 * 109.46396 * 58.53078 * 14 13 12 42 42 H 1.09000 * 109.46782 * 55.05916 * 15 14 13 43 43 H 1.08999 * 109.47125 * 175.05840 * 15 14 13 44 44 H 1.08993 * 109.47057 * 85.41063 * 17 16 15 45 45 H 1.09000 * 109.46648 * 205.41158 * 17 16 15 46 46 H 1.08994 * 109.47432 * 325.40999 * 17 16 15 47 47 H 0.96997 * 119.99934 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49578 * 301.41064 * 26 14 13 49 49 H 1.09005 * 109.49890 * 181.31621 * 26 14 13 50 50 H 1.09000 * 109.59061 * 353.37439 * 27 11 9 51 51 H 1.09004 * 109.58536 * 113.65694 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 0.0060 5 6 3.5814 -0.7122 0.0010 6 6 4.7705 -1.6379 0.0022 7 1 5.6885 -1.0501 0.0027 8 6 4.7291 -2.5199 1.2518 9 6 4.7315 -2.5075 -1.2280 10 8 3.6666 -2.8754 -1.6769 11 7 5.8801 -2.8809 -1.8260 12 6 7.1793 -2.5450 -1.2274 13 6 7.9988 -3.8363 -1.0827 14 6 8.0946 -4.5282 -2.4444 15 6 8.9417 -5.7957 -2.3134 16 7 10.3169 -5.4301 -1.9652 17 6 10.7108 -5.3162 -0.5586 18 6 11.2342 -5.1948 -2.9543 19 1 10.9218 -4.7430 -3.8841 20 6 12.5657 -5.5371 -2.7618 21 7 12.9283 -6.1842 -1.6745 22 14 13.8427 -5.0790 -4.0458 23 1 14.4002 -3.7386 -3.7334 24 1 14.9360 -6.0841 -4.0371 25 1 13.2073 -5.0505 -5.3877 26 6 6.6916 -4.9005 -2.9291 27 6 5.8570 -3.6262 -3.0919 28 8 2.2924 -1.0894 0.0007 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.9665 2.1204 -0.0004 33 1 4.5211 1.2433 0.0111 34 1 3.8563 -3.1713 1.2078 35 1 5.6334 -3.1266 1.2984 36 1 4.6680 -1.8900 2.1392 37 1 7.7084 -1.8435 -1.8724 38 1 7.0245 -2.0969 -0.2460 39 1 7.5114 -4.5017 -0.3701 40 1 9.0000 -3.5925 -0.7274 41 1 8.5599 -3.8533 -3.1628 42 1 8.5257 -6.4315 -1.5318 43 1 8.9378 -6.3348 -3.2607 44 1 10.9936 -6.2983 -0.1799 45 1 11.5580 -4.6358 -0.4726 46 1 9.8739 -4.9298 0.0229 47 1 13.8586 -6.4236 -1.5402 48 1 6.2164 -5.5558 -2.1991 49 1 6.7623 -5.4141 -3.8880 50 1 4.8296 -3.8917 -3.3411 51 1 6.2782 -3.0101 -3.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692022574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:58 Heat of formation + Delta-G solvation = -25.074928 kcal Electronic energy + Delta-G solvation = -29565.381695 eV Core-core repulsion = 25659.099636 eV Total energy + Delta-G solvation = -3906.282059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.58391 -41.33396 -39.06214 -37.07236 -35.52664 -34.38601 -34.06622 -32.70203 -32.04938 -31.66653 -28.72715 -27.75168 -27.44581 -25.70631 -24.61133 -23.87097 -22.73561 -22.50905 -21.61249 -20.95142 -19.82260 -18.63808 -18.30440 -17.77030 -17.11808 -16.90537 -16.47296 -16.23317 -15.72855 -15.52081 -15.31153 -15.26367 -14.96947 -14.79951 -14.41901 -14.22351 -13.99076 -13.90918 -13.72197 -13.68428 -13.60810 -13.43742 -13.19339 -12.93259 -12.85612 -12.77187 -12.57300 -12.49594 -12.44932 -12.40411 -12.15246 -11.98889 -11.89114 -11.81832 -11.26605 -11.18616 -10.87459 -10.69575 -10.56564 -9.69127 -9.21697 -8.52782 -7.80938 -5.38518 0.71213 1.45449 1.47519 1.48442 1.57075 1.63711 1.96887 2.08960 2.52131 3.33674 3.39726 3.49366 3.70825 3.81541 3.91560 4.00030 4.05261 4.12247 4.15716 4.17906 4.20402 4.39979 4.49646 4.53793 4.61476 4.67930 4.70823 4.71636 4.77745 4.81127 4.85388 4.87751 4.90695 4.93718 5.02972 5.05570 5.11271 5.13393 5.17235 5.20789 5.28877 5.34245 5.40603 5.62548 5.63635 5.65681 5.70408 5.73518 6.27042 6.35978 6.44138 7.07038 7.22430 7.92216 8.41243 9.21910 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002253 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.906854 B =12426.177987 C =12557.987568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.031 4.031 3 C -0.225 4.225 4 C -0.205 4.205 5 C -0.022 4.022 6 C -0.026 4.026 7 H 0.149 0.851 8 C -0.138 4.138 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.603 5.603 12 C 0.106 3.894 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.155 3.845 16 N -0.613 5.613 17 C 0.173 3.827 18 C -0.259 4.259 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.269 1.269 26 C -0.116 4.116 27 C 0.115 3.885 28 O -0.183 6.183 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.034 0.966 44 H -0.014 1.014 45 H 0.020 0.980 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.742 14.572 5.685 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 C -0.244 4.244 4 C -0.224 4.224 5 C -0.072 4.072 6 C -0.047 4.047 7 H 0.167 0.833 8 C -0.195 4.195 9 C 0.304 3.696 10 O -0.457 6.457 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.157 4.157 14 C -0.115 4.115 15 C 0.029 3.971 16 N -0.336 5.336 17 C 0.028 3.972 18 C -0.390 4.390 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.194 1.194 26 C -0.155 4.155 27 C -0.007 4.007 28 O -0.080 6.080 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.005 0.995 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.234 13.998 5.498 26.020 hybrid contribution 1.258 -0.174 -0.756 1.478 sum -19.976 13.824 4.742 24.751 Atomic orbital electron populations 1.20461 0.83026 1.04341 1.05103 1.23285 0.95701 0.84123 1.05065 1.21865 0.92402 1.00318 1.09811 1.21922 0.99547 0.93135 1.07755 1.21950 0.82896 0.94250 1.08105 1.20055 0.94928 0.95322 0.94374 0.83326 1.21761 1.03299 0.99448 0.95035 1.20881 0.83226 0.80395 0.85100 1.90683 1.31038 1.57411 1.66585 1.48239 1.06272 1.55097 1.23947 1.22131 0.82025 0.97371 1.00031 1.21993 1.00225 0.96339 0.97138 1.21579 0.94296 0.98439 0.97227 1.20894 0.84202 0.94136 0.97837 1.43960 1.06779 1.80702 1.02156 1.20625 0.95753 0.96790 0.84000 1.19366 0.89210 1.33040 0.97352 0.91897 1.26032 1.00594 0.98456 0.99236 1.70166 1.16219 1.43434 1.28460 0.85319 0.78821 0.76998 0.79590 1.21033 1.22399 1.19397 1.21813 0.94794 0.96782 1.02077 1.21574 1.00987 0.92976 0.85198 1.84036 1.16847 1.35996 1.71102 0.91030 0.87572 0.88316 0.81243 0.81182 0.93467 0.89598 0.89113 0.90210 0.87119 0.92012 0.90525 0.92429 0.94476 0.94707 0.99543 0.96084 0.94122 0.94297 0.92233 0.90293 0.90504 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 71.23 0.74 -0.20 16 2 C -0.03 -0.67 7.32 24.83 0.18 -0.49 16 3 C -0.23 -4.28 10.81 22.19 0.24 -4.04 16 4 C -0.20 -4.08 10.78 22.19 0.24 -3.84 16 5 C -0.02 -0.51 5.55 24.83 0.14 -0.38 16 6 C -0.03 -0.52 2.32 -12.28 -0.03 -0.55 16 7 H 0.15 2.01 6.17 -2.39 -0.01 2.00 16 8 C -0.14 -2.42 9.08 71.98 0.65 -1.76 16 9 C 0.52 13.81 6.68 87.66 0.59 14.40 16 10 O -0.58 -20.45 15.41 7.39 0.11 -20.34 16 11 N -0.60 -14.51 2.97 -818.07 -2.43 -16.94 16 12 C 0.11 2.14 6.18 86.51 0.53 2.67 16 13 C -0.12 -3.11 4.45 30.82 0.14 -2.97 16 14 C -0.09 -2.87 2.36 -10.77 -0.03 -2.90 16 15 C 0.16 6.02 5.17 86.38 0.45 6.46 16 16 N -0.61 -29.29 2.71 -726.93 -1.97 -31.26 16 17 C 0.17 8.09 8.21 127.77 1.05 9.14 16 18 C -0.26 -13.76 9.54 84.03 0.80 -12.96 16 19 H 0.06 3.27 7.83 -2.91 -0.02 3.25 16 20 C -0.05 -2.61 5.17 84.86 0.44 -2.18 16 21 N -0.94 -54.89 11.10 21.65 0.24 -54.65 16 22 Si 0.96 44.20 29.56 68.60 2.03 46.23 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 C -0.12 -3.02 5.36 30.67 0.16 -2.86 16 27 C 0.12 2.89 6.44 86.36 0.56 3.45 16 28 O -0.18 -5.06 10.07 7.94 0.08 -4.98 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.28 7.90 -2.39 -0.02 1.26 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.57 5.33 -2.39 -0.01 1.56 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.28 5.69 -2.39 -0.01 2.26 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.39 8.07 -2.39 -0.02 1.37 16 43 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 44 H -0.01 -0.72 7.72 -2.39 -0.02 -0.74 16 45 H 0.02 1.05 7.26 -2.39 -0.02 1.04 16 46 H 0.04 1.55 5.76 -2.39 -0.01 1.53 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 50 H 0.08 2.12 7.00 -2.39 -0.02 2.11 16 51 H 0.08 1.76 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -72.70 399.74 5.82 -66.87 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.90 Total: 14.05 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.86 Total: 1.02 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -4.15 Total: -102.85 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.19 Total: -25.32 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.70 5.82 -66.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692022574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.798 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds