Wall clock time and date at job start Tue Mar 31 2020 18:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38265 * 119.97465 * 2 1 4 4 C 1.38265 * 120.10872 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.97013 * 180.02562 * 4 3 2 6 6 C 1.38144 * 120.06061 * 0.02562 * 4 3 2 7 7 C 1.38730 * 119.94275 * 359.97438 * 6 4 3 8 8 O 1.35901 * 120.05803 * 179.97438 * 7 6 4 9 9 C 1.42903 * 117.00375 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47166 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47082 * 179.97438 * 10 9 8 12 12 O 1.21290 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00219 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00399 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47633 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.46753 * 294.99933 * 15 14 13 17 17 C 1.52999 * 109.47247 * 174.99972 * 15 14 13 18 18 N 1.46502 * 109.47320 * 54.99965 * 15 14 13 19 19 C 1.46498 * 120.00165 * 59.99956 * 18 15 14 20 20 C 1.36936 * 119.99921 * 240.00505 * 18 15 14 21 21 H 1.08002 * 119.99984 * 23.10093 * 20 18 15 22 22 C 1.38811 * 120.00052 * 203.09593 * 20 18 15 23 23 N 1.31626 * 119.99609 * 12.99082 * 22 20 18 24 24 Si 1.86794 * 120.00166 * 192.99338 * 22 20 18 25 25 H 1.48505 * 109.47022 * 90.00166 * 24 22 20 26 26 H 1.48497 * 109.47285 * 209.99948 * 24 22 20 27 27 H 1.48500 * 109.47200 * 329.99989 * 24 22 20 28 28 C 1.38153 * 119.96863 * 180.25459 * 2 1 3 29 29 H 1.08998 * 109.47554 * 89.99755 * 1 2 3 30 30 H 1.09005 * 109.47530 * 209.99924 * 1 2 3 31 31 H 1.08997 * 109.47279 * 329.99971 * 1 2 3 32 32 H 1.07993 * 119.94027 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47163 * 269.98200 * 5 4 3 34 34 H 1.09004 * 109.46838 * 29.97338 * 5 4 3 35 35 H 1.08993 * 109.47466 * 149.97708 * 5 4 3 36 36 H 1.07995 * 120.02966 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46770 * 300.00151 * 9 8 7 38 38 H 1.08999 * 109.46754 * 59.99515 * 9 8 7 39 39 H 1.08998 * 109.46779 * 299.99566 * 10 9 8 40 40 H 1.08993 * 109.47367 * 60.00010 * 10 9 8 41 41 H 0.97001 * 120.00292 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47351 * 300.00711 * 14 13 11 43 43 H 1.09003 * 109.47010 * 59.99817 * 14 13 11 44 44 H 1.08992 * 109.47371 * 299.99832 * 17 15 14 45 45 H 1.09000 * 109.47235 * 60.00058 * 17 15 14 46 46 H 1.09004 * 109.46847 * 179.97438 * 17 15 14 47 47 H 1.09000 * 109.47104 * 95.12565 * 19 18 15 48 48 H 1.08994 * 109.47428 * 215.12914 * 19 18 15 49 49 H 1.09004 * 109.46860 * 335.13454 * 19 18 15 50 50 H 0.97002 * 119.99398 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.03053 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2010 -0.0005 5 6 4.3302 2.5082 0.0001 6 6 4.2752 0.0069 -0.0016 7 6 3.5844 -1.1962 -0.0016 8 8 4.2656 -2.3721 -0.0032 9 6 3.4890 -3.5718 -0.0037 10 6 4.4228 -4.7837 -0.0048 11 6 3.6038 -6.0488 -0.0047 12 8 2.3925 -5.9870 -0.0033 13 7 4.2173 -7.2487 -0.0061 14 6 3.4212 -8.4785 -0.0054 15 6 4.3549 -9.6906 -0.0067 16 1 4.9196 -9.7132 -0.9388 17 6 3.5279 -10.9716 0.1198 18 7 5.2819 -9.5942 1.1237 19 6 4.7644 -9.5476 2.4934 20 6 6.6320 -9.5476 0.8999 21 1 7.0099 -9.2115 -0.0544 22 6 7.5149 -9.9323 1.8995 23 7 7.0707 -10.5769 2.9577 24 14 9.3335 -9.5351 1.7432 25 1 9.6053 -8.2103 2.3566 26 1 10.1294 -10.5764 2.4412 27 1 9.7114 -9.5028 0.3074 28 6 2.1971 -1.1968 -0.0053 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6564 2.1322 -0.0004 33 1 4.5108 2.8239 -1.0275 34 1 3.7389 3.2659 0.5142 35 1 5.2829 2.3804 0.5137 36 1 5.3552 0.0101 -0.0024 37 1 2.8609 -3.5983 0.8868 38 1 2.8595 -3.5966 -0.8931 39 1 5.0511 -4.7574 -0.8951 40 1 5.0519 -4.7586 0.8849 41 1 5.1861 -7.2982 -0.0069 42 1 2.7937 -8.5047 0.8855 43 1 2.7911 -8.5039 -0.8944 44 1 2.9632 -10.9490 1.0517 45 1 2.8383 -11.0434 -0.7213 46 1 4.1931 -11.8351 0.1184 47 1 4.7656 -10.5521 2.9167 48 1 5.3963 -8.8976 3.0986 49 1 3.7462 -9.1585 2.4841 50 1 7.6877 -10.8460 3.6561 51 1 1.6571 -2.1321 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734038310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:44 Heat of formation + Delta-G solvation = -47.476703 kcal Electronic energy + Delta-G solvation = -28216.605198 eV Core-core repulsion = 24309.351725 eV Total energy + Delta-G solvation = -3907.253473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.43507 -39.43380 -37.96801 -36.76681 -33.83274 -33.78416 -32.52112 -31.90391 -30.52142 -29.34838 -27.48201 -27.21039 -26.06367 -26.03590 -23.83395 -22.98020 -21.87281 -20.77927 -19.94004 -19.25496 -17.86928 -16.98365 -16.53383 -16.44208 -16.29133 -15.96772 -15.51823 -15.35250 -14.77743 -14.19799 -14.10177 -13.95969 -13.72534 -13.48342 -13.47179 -13.22035 -12.98432 -12.80194 -12.75897 -12.66782 -12.27844 -12.16405 -11.98844 -11.78688 -11.62871 -11.51187 -11.45619 -11.10391 -10.94627 -10.86821 -10.79329 -10.68650 -10.44934 -10.31958 -9.94524 -9.81912 -9.64214 -8.82873 -8.64769 -8.58279 -8.30337 -6.84499 -5.79356 -3.27658 1.11416 1.27281 2.82763 2.89048 3.32645 3.39013 3.40922 3.52462 3.81652 4.41500 4.49222 4.53462 4.74064 4.85393 4.89683 4.99632 5.09208 5.09889 5.16295 5.29864 5.32574 5.34714 5.36552 5.37291 5.40327 5.47814 5.55740 5.60907 5.61716 5.68625 5.78133 5.88292 5.94629 6.06216 6.15740 6.16257 6.27226 6.30815 6.40221 6.41518 6.62491 6.72011 6.80313 6.83150 6.99052 7.29411 7.33074 7.67564 7.74056 7.93304 8.31691 8.53264 9.15608 9.78658 10.28363 11.24605 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.002188 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.938189 B =12795.342870 C =14277.670169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.163 4.163 4 C -0.047 4.047 5 C -0.114 4.114 6 C -0.161 4.161 7 C 0.144 3.856 8 O -0.316 6.316 9 C 0.078 3.922 10 C -0.142 4.142 11 C 0.515 3.485 12 O -0.561 6.561 13 N -0.701 5.701 14 C 0.106 3.894 15 C 0.157 3.843 16 H 0.068 0.932 17 C -0.156 4.156 18 N -0.593 5.593 19 C 0.164 3.836 20 C -0.263 4.263 21 H 0.069 0.931 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C -0.214 4.214 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.412 0.588 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.039 0.961 49 H -0.001 1.001 50 H 0.253 0.747 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 20.506 -6.849 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.047 4.047 5 C -0.170 4.170 6 C -0.180 4.180 7 C 0.098 3.902 8 O -0.230 6.230 9 C 0.003 3.997 10 C -0.182 4.182 11 C 0.300 3.700 12 O -0.441 6.441 13 N -0.352 5.352 14 C -0.019 4.019 15 C 0.048 3.952 16 H 0.087 0.913 17 C -0.216 4.216 18 N -0.317 5.317 19 C 0.020 3.980 20 C -0.392 4.392 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.233 4.233 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.249 0.751 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.017 0.983 50 H 0.063 0.937 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.511 20.397 -6.679 23.476 hybrid contribution 1.334 -0.189 0.138 1.354 sum -8.177 20.209 -6.541 22.760 Atomic orbital electron populations 1.20826 0.91028 1.02949 1.02511 1.19694 0.95986 0.92433 0.96302 1.20777 0.93411 0.97439 1.06534 1.19654 0.93610 0.94539 0.96937 1.20797 1.00023 0.93717 1.02488 1.20268 1.00209 0.89270 1.08263 1.18939 0.90433 0.85797 0.95030 1.85992 1.36221 1.12463 1.88334 1.22436 0.93242 0.81152 1.02871 1.21460 0.99302 0.91158 1.06237 1.20138 0.88191 0.85043 0.76602 1.90673 1.14306 1.87721 1.51445 1.45866 1.11664 1.04973 1.72669 1.21973 0.94495 0.84659 1.00821 1.20624 0.90795 0.90875 0.92875 0.91339 1.22185 0.99659 0.99462 1.00301 1.43984 1.01853 1.85399 1.00417 1.20727 0.92572 0.99593 0.85149 1.19188 0.81349 1.38406 1.00286 0.91337 1.25049 0.97970 0.98298 0.98053 1.70076 1.33699 1.40379 1.10474 0.86282 0.85201 0.77622 0.77546 1.21457 1.21806 1.20488 1.21221 0.93063 0.99184 1.09837 0.90938 0.91306 0.91397 0.86142 0.90955 0.91387 0.91302 0.85290 0.91083 0.91167 0.87889 0.87568 0.75141 0.92064 0.92438 0.93170 0.93988 0.92180 0.95175 0.94237 0.98288 0.93698 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.04 -0.45 5.88 -104.64 -0.62 -1.06 16 3 C -0.16 -1.55 9.35 -39.56 -0.37 -1.92 16 4 C -0.05 -0.46 5.88 -104.65 -0.62 -1.07 16 5 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 6 C -0.16 -1.81 9.64 -39.43 -0.38 -2.19 16 7 C 0.14 1.80 6.69 -39.22 -0.26 1.54 16 8 O -0.32 -4.17 10.14 -19.43 -0.20 -4.37 16 9 C 0.08 0.99 4.03 37.16 0.15 1.14 16 10 C -0.14 -1.79 6.07 -27.89 -0.17 -1.96 16 11 C 0.51 8.15 7.83 -10.99 -0.09 8.07 16 12 O -0.56 -10.43 15.98 5.55 0.09 -10.35 16 13 N -0.70 -11.51 5.39 -60.29 -0.32 -11.83 16 14 C 0.11 1.82 4.93 -4.04 -0.02 1.80 16 15 C 0.16 2.94 2.87 -67.93 -0.19 2.74 16 16 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 17 C -0.16 -2.71 9.19 37.16 0.34 -2.37 16 18 N -0.59 -13.49 2.28 -173.49 -0.40 -13.88 16 19 C 0.16 3.86 8.00 59.85 0.48 4.34 16 20 C -0.26 -6.58 9.31 -15.06 -0.14 -6.72 16 21 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 22 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 23 N -0.90 -25.28 10.72 55.49 0.59 -24.69 16 24 Si 0.90 20.81 29.57 -169.99 -5.03 15.78 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C -0.21 -2.51 8.69 -39.43 -0.34 -2.85 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.07 0.93 7.63 -51.93 -0.40 0.53 16 38 H 0.07 0.88 7.61 -51.93 -0.40 0.49 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.41 6.80 7.89 -40.82 -0.32 6.48 16 42 H 0.06 1.13 6.86 -51.93 -0.36 0.78 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.88 7.67 -51.93 -0.40 0.49 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.03 0.78 7.34 -51.93 -0.38 0.40 16 48 H 0.04 1.00 7.35 -51.93 -0.38 0.62 16 49 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 50 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.13 1.48 6.30 -52.49 -0.33 1.15 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -30.02 413.52 -9.36 -39.38 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.74 Total: 5.10 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.59 Total: -1.38 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.13 Total: -50.40 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.11 Total: -14.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.02 -9.36 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734038310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.097 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds