Wall clock time and date at job start Tue Mar 31 2020 18:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47400 * 239.99372 * 2 1 3 5 5 C 1.50703 * 109.47027 * 119.99509 * 2 1 3 6 6 C 1.38381 * 119.92750 * 0.02562 * 5 2 1 7 7 C 1.38338 * 120.29350 * 180.02562 * 6 5 2 8 8 C 1.37981 * 120.14450 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85307 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.14716 * 180.02562 * 9 8 7 11 11 O 1.21545 * 120.00243 * 134.89790 * 10 9 8 12 12 N 1.34779 * 119.99447 * 314.89673 * 10 9 8 13 13 C 1.46492 * 120.00394 * 6.21285 * 12 10 9 14 14 C 1.52998 * 109.47528 * 98.49383 * 13 12 10 15 15 O 1.42900 * 109.47230 * 67.59593 * 14 13 12 16 16 C 1.46501 * 119.99693 * 186.21161 * 12 10 9 17 17 C 1.53005 * 109.47165 * 89.99845 * 16 12 10 18 18 N 1.46494 * 109.47550 * 179.97438 * 17 16 12 19 19 C 1.36933 * 120.00683 * 180.02562 * 18 17 16 20 20 H 1.08011 * 119.99366 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00682 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00522 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00123 * 23 21 19 25 25 H 1.48493 * 109.47408 * 210.00677 * 23 21 19 26 26 H 1.48508 * 109.47142 * 330.00754 * 23 21 19 27 27 C 1.37936 * 119.92599 * 180.02562 * 5 2 1 28 28 H 1.09005 * 109.47274 * 300.00290 * 1 2 3 29 29 H 1.08996 * 109.47304 * 60.00311 * 1 2 3 30 30 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46441 * 299.99585 * 3 2 1 33 33 H 1.08993 * 109.47367 * 59.99371 * 3 2 1 34 34 H 1.08995 * 109.47118 * 300.00099 * 4 2 1 35 35 H 1.08998 * 109.47074 * 60.00172 * 4 2 1 36 36 H 1.09004 * 109.47158 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.85136 * 359.74216 * 6 5 2 38 38 H 1.08004 * 119.92733 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.07192 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47389 * 218.49537 * 13 12 10 41 41 H 1.09000 * 109.47468 * 338.49039 * 13 12 10 42 42 H 1.09000 * 109.47623 * 187.60279 * 14 13 12 43 43 H 1.09007 * 109.46840 * 307.60238 * 14 13 12 44 44 H 0.96700 * 114.00400 * 180.02562 * 15 14 13 45 45 H 1.09003 * 109.47370 * 209.99975 * 16 12 10 46 46 H 1.08997 * 109.47248 * 330.00599 * 16 12 10 47 47 H 1.08995 * 109.47375 * 300.00106 * 17 16 12 48 48 H 1.09002 * 109.46855 * 60.00082 * 17 16 12 49 49 H 0.97012 * 119.99996 * 0.02562 * 18 17 16 50 50 H 0.96998 * 120.00301 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.07419 * 359.96011 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.1317 -1.2360 2.1402 7 6 1.5844 -1.8891 3.2726 8 6 2.9387 -2.0207 3.5017 9 6 3.8523 -1.4928 2.5883 10 6 5.3048 -1.6306 2.8271 11 8 6.0405 -1.9677 1.9202 12 7 5.8131 -1.3825 4.0504 13 6 4.9151 -1.1096 5.1752 14 6 4.7249 -2.3857 5.9974 15 8 5.9554 -2.7269 6.6389 16 6 7.2637 -1.3857 4.2553 17 6 7.8150 0.0223 4.0216 18 7 9.2654 0.0193 4.2271 19 6 9.9814 1.1763 4.0727 20 1 9.4765 2.0913 3.7997 21 6 11.3558 1.1733 4.2668 22 7 12.0440 2.2853 4.1179 23 14 12.2288 -0.4090 4.7395 24 1 12.6509 -1.1277 3.5105 25 1 13.4238 -0.0888 5.5608 26 1 11.3056 -1.2687 5.5231 27 6 3.3887 -0.8350 1.4476 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 0.0706 -1.1320 1.9676 38 1 0.8763 -2.2975 3.9785 39 1 3.2909 -2.5311 4.3859 40 1 5.3478 -0.3325 5.8054 41 1 3.9497 -0.7742 4.7963 42 1 3.9554 -2.2209 6.7516 43 1 4.4203 -3.1998 5.3395 44 1 5.9088 -3.5280 7.1785 45 1 7.4859 -1.6981 5.2757 46 1 7.7282 -2.0787 3.5539 47 1 7.5929 0.3347 3.0013 48 1 7.3505 0.7154 4.7230 49 1 9.7188 -0.8025 4.4726 50 1 13.0044 2.2832 4.2540 51 1 4.0906 -0.4248 0.7366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326120408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:40 Heat of formation + Delta-G solvation = -40.543447 kcal Electronic energy + Delta-G solvation = -29449.258599 eV Core-core repulsion = 25542.305774 eV Total energy + Delta-G solvation = -3906.952824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80526 -39.32830 -37.34763 -36.52442 -35.65882 -34.41397 -31.91073 -31.31973 -30.52529 -29.48024 -28.13084 -27.50296 -27.45869 -24.27203 -23.36971 -23.33158 -22.43064 -21.30441 -20.17744 -18.87943 -17.84326 -17.51785 -17.43525 -16.49894 -16.28732 -15.57749 -15.40008 -14.98257 -14.58026 -14.49158 -14.41626 -14.11050 -13.87209 -13.76987 -13.68813 -13.53520 -13.08755 -12.99680 -12.61845 -12.56664 -12.41717 -12.29408 -12.01823 -11.96933 -11.89025 -11.76347 -11.45425 -11.24553 -11.08962 -11.02237 -10.97828 -10.82000 -10.63294 -10.21402 -10.09829 -9.80269 -9.53373 -9.15312 -8.93749 -8.82248 -8.53798 -7.16677 -5.70030 -3.05464 0.78743 1.08876 2.70993 2.98446 3.44741 3.48427 3.51414 3.52763 3.97585 4.22416 4.27771 4.44266 4.65426 4.66480 4.67735 4.76490 4.84318 4.93791 4.96344 5.04213 5.05601 5.17332 5.25254 5.32509 5.35235 5.46795 5.48593 5.54379 5.56996 5.58606 5.62303 5.63017 5.72658 5.75995 5.78941 5.83963 5.87483 5.93537 6.02342 6.10585 6.16185 6.17108 6.32690 6.49921 6.63883 6.73379 6.89968 7.36987 7.50222 8.05409 8.21240 8.48563 9.27585 10.00025 10.20103 11.48441 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002922 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.406641 B = 9579.286586 C =11050.342176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.074 4.074 6 C -0.105 4.105 7 C -0.124 4.124 8 C -0.112 4.112 9 C -0.117 4.117 10 C 0.553 3.447 11 O -0.526 6.526 12 N -0.593 5.593 13 C 0.095 3.905 14 C 0.055 3.945 15 O -0.561 6.561 16 C 0.104 3.896 17 C 0.148 3.852 18 N -0.752 5.752 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.062 4.062 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.377 0.623 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.025 0.975 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.248 -10.179 -1.252 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.074 4.074 6 C -0.123 4.123 7 C -0.142 4.142 8 C -0.130 4.130 9 C -0.121 4.121 10 C 0.341 3.659 11 O -0.402 6.402 12 N -0.325 5.325 13 C -0.029 4.029 14 C -0.024 4.024 15 O -0.366 6.366 16 C -0.018 4.018 17 C 0.019 3.981 18 N -0.398 5.398 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.081 4.081 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.224 0.776 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.045 0.955 48 H 0.043 0.957 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.572 -9.568 -2.090 31.151 hybrid contribution 0.504 -1.541 0.766 1.793 sum -29.068 -11.108 -1.324 31.147 Atomic orbital electron populations 1.21966 0.94072 1.01917 1.02088 1.19522 0.95677 0.95266 0.92506 1.21924 1.01689 0.94252 1.02033 1.21920 1.01710 1.00168 0.96061 1.19789 0.92796 0.98559 0.96241 1.21340 0.99951 0.97157 0.93812 1.21072 0.95148 1.00023 0.97919 1.21702 0.93220 0.99356 0.98750 1.19942 0.93096 1.02263 0.96749 1.18438 0.87493 0.77430 0.82568 1.90815 1.60504 1.46100 1.42793 1.47676 1.07512 1.69468 1.07797 1.21978 0.95855 0.96859 0.88198 1.22825 0.86954 0.97274 0.95352 1.86599 1.33468 1.48843 1.67703 1.21815 0.77637 0.99070 1.03239 1.20875 0.85154 0.93613 0.98424 1.42545 1.02327 1.09409 1.85552 1.19036 0.90059 0.88338 1.39588 0.89299 1.24659 0.96091 0.96683 1.01798 1.69703 1.06842 1.25548 1.56303 0.86521 0.79401 0.84136 0.78386 1.21013 1.21743 1.20199 1.21026 0.95240 0.96474 0.95361 0.92220 0.92203 0.92285 0.92050 0.92137 0.92353 0.92464 0.92171 0.92022 0.85299 0.85543 0.84900 0.89054 0.87806 0.92430 0.93265 0.77564 0.88879 0.90038 0.95490 0.95692 0.80615 0.93099 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 7.13 37.16 0.26 -0.59 16 2 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 3 C -0.14 -1.13 8.28 37.16 0.31 -0.82 16 4 C -0.14 -1.12 8.29 37.16 0.31 -0.81 16 5 C -0.07 -0.69 4.76 -104.68 -0.50 -1.19 16 6 C -0.10 -0.82 8.97 -39.49 -0.35 -1.18 16 7 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 8 C -0.11 -1.04 7.39 -39.18 -0.29 -1.33 16 9 C -0.12 -1.47 5.12 -104.97 -0.54 -2.00 16 10 C 0.55 8.85 7.28 -12.33 -0.09 8.76 16 11 O -0.53 -10.59 16.54 5.33 0.09 -10.50 16 12 N -0.59 -8.81 2.48 -174.81 -0.43 -9.25 16 13 C 0.09 1.03 5.34 -4.05 -0.02 1.01 16 14 C 0.05 0.46 6.36 37.16 0.24 0.70 16 15 O -0.56 -5.84 11.86 -35.23 -0.42 -6.25 16 16 C 0.10 1.88 5.44 -4.04 -0.02 1.86 16 17 C 0.15 3.20 6.58 -4.04 -0.03 3.18 16 18 N -0.75 -19.40 5.41 -59.91 -0.32 -19.72 16 19 C -0.24 -7.22 10.47 -15.06 -0.16 -7.38 16 20 H 0.09 2.85 8.06 -52.48 -0.42 2.42 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.94 -30.44 13.97 55.49 0.78 -29.66 16 23 Si 0.89 23.09 27.73 -169.99 -4.71 18.37 16 24 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 27 C -0.06 -0.74 8.35 -39.18 -0.33 -1.07 16 28 H 0.06 0.33 7.51 -51.93 -0.39 -0.06 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 7.51 -51.92 -0.39 -0.07 16 31 H 0.06 0.56 7.38 -51.93 -0.38 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.56 7.38 -51.93 -0.38 0.17 16 37 H 0.13 0.74 5.87 -52.49 -0.31 0.44 16 38 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.13 1.03 3.75 -52.49 -0.20 0.84 16 40 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 41 H 0.10 0.94 4.96 -51.93 -0.26 0.68 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.39 6.40 -51.92 -0.33 0.06 16 44 H 0.38 2.22 9.12 45.56 0.42 2.63 16 45 H 0.09 1.62 6.43 -51.93 -0.33 1.29 16 46 H 0.08 1.60 7.34 -51.93 -0.38 1.22 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.36 9.03 5.53 -40.81 -0.23 8.81 16 50 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 51 H 0.13 1.66 7.09 -52.49 -0.37 1.29 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -37.36 398.83 -8.21 -45.57 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.36 Total: 8.00 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.83 Total: -2.57 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.02 Total: -58.63 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.33 Total: -16.76 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.36 -8.21 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326120408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.025 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds