Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47400 * 239.99372 * 2 1 3 5 5 C 1.50703 * 109.47027 * 119.99509 * 2 1 3 6 6 C 1.38381 * 119.92750 * 0.02562 * 5 2 1 7 7 C 1.38338 * 120.29350 * 180.02562 * 6 5 2 8 8 C 1.37981 * 120.14450 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85307 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.14716 * 180.02562 * 9 8 7 11 11 O 1.21545 * 120.00243 * 134.89790 * 10 9 8 12 12 N 1.34779 * 119.99447 * 314.89673 * 10 9 8 13 13 C 1.46492 * 120.00394 * 6.21285 * 12 10 9 14 14 C 1.52998 * 109.47528 * 98.49383 * 13 12 10 15 15 O 1.42900 * 109.47230 * 67.59593 * 14 13 12 16 16 C 1.46501 * 119.99693 * 186.21161 * 12 10 9 17 17 C 1.53005 * 109.47165 * 89.99845 * 16 12 10 18 18 N 1.46494 * 109.47550 * 179.97438 * 17 16 12 19 19 C 1.36933 * 120.00683 * 180.02562 * 18 17 16 20 20 H 1.08011 * 119.99366 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00682 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00522 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00123 * 23 21 19 25 25 H 1.48493 * 109.47408 * 210.00677 * 23 21 19 26 26 H 1.48508 * 109.47142 * 330.00754 * 23 21 19 27 27 C 1.37936 * 119.92599 * 180.02562 * 5 2 1 28 28 H 1.09005 * 109.47274 * 300.00290 * 1 2 3 29 29 H 1.08996 * 109.47304 * 60.00311 * 1 2 3 30 30 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46441 * 299.99585 * 3 2 1 33 33 H 1.08993 * 109.47367 * 59.99371 * 3 2 1 34 34 H 1.08995 * 109.47118 * 300.00099 * 4 2 1 35 35 H 1.08998 * 109.47074 * 60.00172 * 4 2 1 36 36 H 1.09004 * 109.47158 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.85136 * 359.74216 * 6 5 2 38 38 H 1.08004 * 119.92733 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.07192 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47389 * 218.49537 * 13 12 10 41 41 H 1.09000 * 109.47468 * 338.49039 * 13 12 10 42 42 H 1.09000 * 109.47623 * 187.60279 * 14 13 12 43 43 H 1.09007 * 109.46840 * 307.60238 * 14 13 12 44 44 H 0.96700 * 114.00400 * 180.02562 * 15 14 13 45 45 H 1.09003 * 109.47370 * 209.99975 * 16 12 10 46 46 H 1.08997 * 109.47248 * 330.00599 * 16 12 10 47 47 H 1.08995 * 109.47375 * 300.00106 * 17 16 12 48 48 H 1.09002 * 109.46855 * 60.00082 * 17 16 12 49 49 H 0.97012 * 119.99996 * 0.02562 * 18 17 16 50 50 H 0.96998 * 120.00301 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.07419 * 359.96011 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.1317 -1.2360 2.1402 7 6 1.5844 -1.8891 3.2726 8 6 2.9387 -2.0207 3.5017 9 6 3.8523 -1.4928 2.5883 10 6 5.3048 -1.6306 2.8271 11 8 6.0405 -1.9677 1.9202 12 7 5.8131 -1.3825 4.0504 13 6 4.9151 -1.1096 5.1752 14 6 4.7249 -2.3857 5.9974 15 8 5.9554 -2.7269 6.6389 16 6 7.2637 -1.3857 4.2553 17 6 7.8150 0.0223 4.0216 18 7 9.2654 0.0193 4.2271 19 6 9.9814 1.1763 4.0727 20 1 9.4765 2.0913 3.7997 21 6 11.3558 1.1733 4.2668 22 7 12.0440 2.2853 4.1179 23 14 12.2288 -0.4090 4.7395 24 1 12.6509 -1.1277 3.5105 25 1 13.4238 -0.0888 5.5608 26 1 11.3056 -1.2687 5.5231 27 6 3.3887 -0.8350 1.4476 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 0.0706 -1.1320 1.9676 38 1 0.8763 -2.2975 3.9785 39 1 3.2909 -2.5311 4.3859 40 1 5.3478 -0.3325 5.8054 41 1 3.9497 -0.7742 4.7963 42 1 3.9554 -2.2209 6.7516 43 1 4.4203 -3.1998 5.3395 44 1 5.9088 -3.5280 7.1785 45 1 7.4859 -1.6981 5.2757 46 1 7.7282 -2.0787 3.5539 47 1 7.5929 0.3347 3.0013 48 1 7.3505 0.7154 4.7230 49 1 9.7188 -0.8025 4.4726 50 1 13.0044 2.2832 4.2540 51 1 4.0906 -0.4248 0.7366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326120408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = -67.308839 kcal Electronic energy + Delta-G solvation = -29450.419233 eV Core-core repulsion = 25542.305774 eV Total energy + Delta-G solvation = -3908.113459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78150 -40.23920 -38.28403 -37.40625 -37.06287 -35.96743 -33.79977 -32.37405 -31.61288 -30.42348 -29.39980 -28.25872 -28.15760 -25.85107 -24.39956 -24.10697 -23.70085 -22.93224 -21.09570 -20.02826 -19.48280 -18.60468 -18.30089 -17.63212 -17.24822 -16.66099 -16.52078 -16.15821 -15.97491 -15.53413 -15.33592 -15.23773 -15.15367 -14.95125 -14.79043 -14.67685 -14.38907 -14.14060 -13.75499 -13.45119 -13.41366 -13.12477 -13.06345 -13.02345 -12.82024 -12.75021 -12.62240 -12.55893 -12.47537 -12.25166 -12.12650 -11.86361 -11.84109 -11.72659 -11.45872 -11.06951 -11.01529 -10.85483 -9.98293 -9.76349 -9.66406 -9.41778 -8.08859 -5.45029 -0.02551 0.37069 1.34787 1.39682 1.46587 1.54677 1.86318 2.44281 2.74437 3.21552 3.30048 3.36130 3.58378 3.67937 3.81858 3.94696 4.03897 4.09111 4.09593 4.10592 4.18796 4.30357 4.33912 4.39183 4.41077 4.50699 4.53510 4.62394 4.73004 4.75528 4.83418 4.84766 4.88429 4.96454 4.97457 4.98580 5.02970 5.03497 5.13920 5.23387 5.32851 5.36124 5.38497 5.42727 5.50649 5.65316 5.66097 5.95230 6.13893 6.27515 6.95670 6.97066 7.00445 7.71575 7.93891 9.12457 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002922 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.406641 B = 9579.286586 C =11050.342176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.077 4.077 6 C -0.096 4.096 7 C -0.111 4.111 8 C -0.107 4.107 9 C -0.141 4.141 10 C 0.547 3.453 11 O -0.583 6.583 12 N -0.590 5.590 13 C 0.085 3.915 14 C 0.058 3.942 15 O -0.590 6.590 16 C 0.122 3.878 17 C 0.152 3.848 18 N -0.753 5.753 19 C -0.244 4.244 20 H 0.052 0.948 21 C -0.060 4.060 22 N -0.981 5.981 23 Si 0.959 3.041 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.248 1.248 27 C -0.084 4.084 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.396 0.604 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.001 0.999 48 H 0.030 0.970 49 H 0.368 0.632 50 H 0.261 0.739 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.916 -12.512 0.781 36.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.198 4.198 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.125 4.125 9 C -0.144 4.144 10 C 0.338 3.662 11 O -0.464 6.464 12 N -0.321 5.321 13 C -0.036 4.036 14 C -0.020 4.020 15 O -0.399 6.399 16 C -0.001 4.001 17 C 0.025 3.975 18 N -0.399 5.399 19 C -0.374 4.374 20 H 0.070 0.930 21 C -0.252 4.252 22 N -0.631 5.631 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.172 1.172 27 C -0.103 4.103 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.247 0.753 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.019 0.981 48 H 0.048 0.952 49 H 0.202 0.798 50 H 0.070 0.930 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -33.309 -11.921 -0.012 35.378 hybrid contribution 1.543 -0.705 0.084 1.699 sum -31.766 -12.626 0.071 34.184 Atomic orbital electron populations 1.21949 0.91815 1.02848 1.03037 1.19571 0.97352 0.94486 0.91622 1.21921 1.00255 0.95003 1.02713 1.21915 1.00267 1.00624 0.97027 1.19972 0.91790 0.98690 0.97286 1.21757 1.01118 0.95485 0.93021 1.21529 0.94772 0.98480 0.98116 1.21900 0.93585 0.98620 0.98398 1.19751 0.91171 1.04941 0.98494 1.19125 0.89018 0.76131 0.81960 1.90768 1.62270 1.48829 1.44506 1.47749 1.06581 1.68801 1.08939 1.22348 0.95716 0.98532 0.87034 1.22846 0.87302 0.95814 0.96042 1.86524 1.34734 1.50290 1.68366 1.21413 0.79786 0.95676 1.03226 1.20914 0.83345 0.96438 0.96839 1.42486 1.03745 1.08281 1.85430 1.18974 0.90646 0.88565 1.39257 0.93007 1.25558 0.96809 1.00809 1.02025 1.69883 1.07269 1.28329 1.57591 0.85352 0.78265 0.79482 0.78390 1.20595 1.21274 1.17245 1.20943 0.96287 0.97848 0.95216 0.91199 0.91439 0.91282 0.94385 0.90976 0.92083 0.92222 0.90923 0.94368 0.82248 0.81457 0.83082 0.89866 0.85778 0.88497 0.92499 0.75333 0.87525 0.91918 0.98125 0.95200 0.79836 0.93008 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.13 71.98 0.51 -0.72 16 2 C -0.03 -0.44 0.85 -52.93 -0.05 -0.49 16 3 C -0.14 -2.29 8.28 71.98 0.60 -1.69 16 4 C -0.14 -2.27 8.29 71.98 0.60 -1.67 16 5 C -0.08 -1.37 4.76 -19.90 -0.09 -1.46 16 6 C -0.10 -1.16 8.97 22.33 0.20 -0.95 16 7 C -0.11 -1.18 10.03 22.23 0.22 -0.96 16 8 C -0.11 -1.70 7.39 22.53 0.17 -1.53 16 9 C -0.14 -3.53 5.12 -20.09 -0.10 -3.64 16 10 C 0.55 18.35 7.28 86.79 0.63 18.99 16 11 O -0.58 -25.37 16.54 -3.86 -0.06 -25.43 16 12 N -0.59 -17.75 2.48 -825.24 -2.05 -19.80 16 13 C 0.09 1.72 5.34 86.38 0.46 2.18 16 14 C 0.06 0.79 6.36 71.98 0.46 1.25 16 15 O -0.59 -10.73 11.86 -148.98 -1.77 -12.50 16 16 C 0.12 4.49 5.44 86.38 0.47 4.96 16 17 C 0.15 6.88 6.58 86.38 0.57 7.45 16 18 N -0.75 -39.58 5.41 -343.46 -1.86 -41.44 16 19 C -0.24 -15.16 10.47 84.03 0.88 -14.28 16 20 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 22 N -0.98 -65.56 13.97 21.65 0.30 -65.25 16 23 Si 0.96 47.87 27.73 68.60 1.90 49.77 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 27 C -0.08 -2.10 8.35 22.53 0.19 -1.91 16 28 H 0.07 0.49 7.51 -2.38 -0.02 0.48 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.49 7.51 -2.38 -0.02 0.47 16 31 H 0.04 0.77 7.38 -2.39 -0.02 0.75 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.77 7.38 -2.38 -0.02 0.76 16 37 H 0.16 0.98 5.87 -2.91 -0.02 0.97 16 38 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 39 H 0.15 1.78 3.75 -2.91 -0.01 1.77 16 40 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 41 H 0.12 1.97 4.96 -2.39 -0.01 1.96 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.71 6.40 -2.38 -0.02 0.69 16 44 H 0.40 3.51 9.12 -74.06 -0.68 2.83 16 45 H 0.11 3.64 6.43 -2.39 -0.02 3.63 16 46 H 0.06 2.55 7.34 -2.39 -0.02 2.53 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.37 18.23 5.53 -92.70 -0.51 17.71 16 50 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 51 H 0.10 3.01 7.09 -2.91 -0.02 2.99 16 Total: -1.00 -86.62 398.83 2.35 -84.27 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.30 Total: 28.15 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.18 Total: 2.23 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -3.60 Total: -126.49 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.83 Total: -37.93 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.77 kcal Total: -86.62 2.35 -84.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326120408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.959 kcal (2) G-P(sol) polarization free energy of solvation -86.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds