Wall clock time and date at job start Tue Mar 31 2020 18:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99974 * 2 1 4 4 C 1.53005 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46942 * 64.99807 * 4 3 2 6 6 C 1.36931 * 119.99823 * 274.46455 * 5 4 3 7 7 H 1.08008 * 119.99419 * 146.17042 * 6 5 4 8 8 C 1.38805 * 120.00688 * 326.17167 * 6 5 4 9 9 N 1.31624 * 119.99866 * 335.31442 * 8 6 5 10 10 Si 1.86801 * 120.00415 * 155.31127 * 8 6 5 11 11 H 1.48505 * 109.47103 * 89.99747 * 10 8 6 12 12 H 1.48497 * 109.47495 * 210.00040 * 10 8 6 13 13 H 1.48502 * 109.46803 * 330.00464 * 10 8 6 14 14 C 1.46494 * 119.99637 * 94.47107 * 5 4 3 15 15 C 1.52999 * 109.47043 * 269.99861 * 14 5 4 16 16 N 1.46504 * 109.47143 * 180.02562 * 15 14 5 17 17 C 1.34777 * 120.00007 * 180.02562 * 16 15 14 18 18 O 1.21559 * 119.99815 * 359.97438 * 17 16 15 19 19 C 1.47844 * 120.00370 * 179.97438 * 17 16 15 20 20 C 1.39568 * 120.14575 * 179.97438 * 19 17 16 21 21 C 1.37965 * 119.85084 * 180.02562 * 20 19 17 22 22 C 1.38359 * 120.14521 * 0.02617 * 21 20 19 23 23 C 1.50699 * 119.85458 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.46988 * 239.99821 * 23 22 21 25 25 C 1.52994 * 109.47628 * 119.99710 * 23 22 21 26 26 C 1.38355 * 120.29135 * 0.22499 * 22 21 20 27 27 C 1.37961 * 120.14563 * 359.49666 * 26 22 21 28 28 H 1.08999 * 109.47236 * 59.99763 * 1 2 3 29 29 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47043 * 299.99854 * 1 2 3 31 31 H 1.08995 * 109.47171 * 60.00105 * 3 2 1 32 32 H 1.09001 * 109.47316 * 300.00207 * 3 2 1 33 33 H 1.09008 * 109.46512 * 305.00279 * 4 3 2 34 34 H 1.08996 * 109.47459 * 185.00403 * 4 3 2 35 35 H 0.96998 * 119.99567 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47522 * 149.99680 * 14 5 4 37 37 H 1.09006 * 109.47550 * 29.99492 * 14 5 4 38 38 H 1.08990 * 109.47542 * 60.00036 * 15 14 5 39 39 H 1.09008 * 109.47119 * 299.99969 * 15 14 5 40 40 H 0.96997 * 120.00438 * 359.97438 * 16 15 14 41 41 H 1.07996 * 120.07947 * 0.02562 * 20 19 17 42 42 H 1.08004 * 119.92495 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47053 * 359.97438 * 23 22 21 44 44 H 1.09001 * 109.46977 * 299.99745 * 24 23 22 45 45 H 1.09005 * 109.47579 * 59.99510 * 24 23 22 46 46 H 1.09002 * 109.47213 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.47059 * 59.99814 * 25 23 22 48 48 H 1.08995 * 109.47251 * 180.02562 * 25 23 22 49 49 H 1.09004 * 109.46690 * 299.99954 * 25 23 22 50 50 H 1.08000 * 119.92894 * 179.74543 * 26 22 21 51 51 H 1.08005 * 120.06956 * 180.24744 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0092 -0.7998 -1.3662 7 1 3.7901 -1.2683 -2.3144 8 6 4.3247 -1.5806 -0.2628 9 7 5.0420 -1.0746 0.7180 10 14 3.7314 -3.3494 -0.1697 11 1 4.7458 -4.2447 -0.7819 12 1 3.5289 -3.7295 1.2515 13 1 2.4477 -3.4802 -0.9048 14 6 4.3801 1.4036 -2.3833 15 6 3.1611 1.7025 -3.2583 16 7 3.5656 2.5414 -4.3892 17 6 2.6512 2.9332 -5.2986 18 8 1.4910 2.5902 -5.1806 19 6 3.0593 3.7802 -6.4396 20 6 2.1150 4.1873 -7.3833 21 6 2.5025 4.9772 -8.4460 22 6 3.8240 5.3653 -8.5776 23 6 4.2402 6.2277 -9.7412 24 6 5.2947 5.4916 -10.5701 25 6 4.8273 7.5405 -9.2190 26 6 4.7660 4.9610 -7.6484 27 6 4.3906 4.1758 -6.5780 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 5.2628 -1.6204 1.4889 36 1 5.1317 0.8801 -2.9740 37 1 4.7978 2.3389 -2.0105 38 1 2.4095 2.2262 -2.6677 39 1 2.7434 0.7673 -3.6312 40 1 4.4913 2.8154 -4.4832 41 1 1.0832 3.8846 -7.2820 42 1 1.7729 5.2925 -9.1772 43 1 3.3718 6.4404 -10.3648 44 1 6.1631 5.2786 -9.9467 45 1 4.8764 4.5562 -10.9422 46 1 5.5954 6.1151 -11.4120 47 1 5.6958 7.3275 -8.5956 48 1 5.1279 8.1643 -10.0606 49 1 4.0760 8.0649 -8.6285 50 1 5.7967 5.2640 -7.7591 51 1 5.1263 3.8641 -5.8512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755841756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:19 Heat of formation + Delta-G solvation = -44.555551 kcal Electronic energy + Delta-G solvation = -28564.321107 eV Core-core repulsion = 24657.194305 eV Total energy + Delta-G solvation = -3907.126802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.28152 -38.79645 -37.22661 -35.78804 -35.48061 -34.20815 -31.59658 -31.08742 -30.36713 -29.23758 -27.51857 -27.34684 -25.58421 -24.59304 -23.57008 -22.92272 -21.79285 -20.88913 -20.34655 -19.85640 -17.92022 -16.77040 -16.41522 -15.75784 -15.55548 -15.12676 -15.09217 -14.97152 -14.80224 -14.53495 -14.12686 -13.99972 -13.92894 -13.80429 -13.60122 -13.43716 -13.21157 -12.81089 -12.79492 -12.61639 -12.25001 -11.91789 -11.77234 -11.61891 -11.50602 -11.18507 -11.14709 -10.95956 -10.83332 -10.73567 -10.62976 -10.53295 -10.02935 -9.94886 -9.76028 -9.68537 -9.18904 -8.99328 -8.77716 -8.58483 -8.37448 -6.60681 -5.70328 -3.22892 0.72104 1.18049 2.90236 3.38019 3.47514 3.54401 3.63264 3.78622 4.26688 4.39947 4.60118 4.69081 4.75680 4.77684 4.80569 4.88408 5.05633 5.13693 5.24758 5.26015 5.39727 5.44966 5.48931 5.55019 5.56603 5.67203 5.78778 5.79926 5.83023 5.83812 5.85315 5.88091 5.93788 6.11535 6.13295 6.20230 6.22823 6.31676 6.33144 6.33806 6.59135 6.65534 6.66943 6.70912 6.71551 6.95213 7.68825 7.74262 7.90678 8.15075 8.41580 8.57938 9.23046 9.89361 10.39800 11.31349 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.002212 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.749385 B =12657.286052 C =13183.026391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.136 3.864 5 N -0.570 5.570 6 C -0.244 4.244 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.718 5.718 17 C 0.550 3.450 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.059 4.059 21 C -0.127 4.127 22 C -0.058 4.058 23 C -0.060 4.060 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.123 4.123 27 C -0.084 4.084 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.126 0.874 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 16.492 -17.188 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.373 4.373 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.369 5.369 17 C 0.337 3.663 18 O -0.421 6.421 19 C -0.135 4.135 20 C -0.078 4.078 21 C -0.145 4.145 22 C -0.058 4.058 23 C -0.078 4.078 24 C -0.202 4.202 25 C -0.202 4.202 26 C -0.141 4.141 27 C -0.103 4.103 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.144 0.856 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.993 15.954 -16.883 23.250 hybrid contribution -0.340 -0.527 0.124 0.640 sum -1.333 15.427 -16.759 22.817 Atomic orbital electron populations 1.22637 0.84359 1.01437 0.98421 1.88232 1.16436 1.27417 1.94794 1.23452 0.98638 0.84330 0.96859 1.21169 0.87938 0.96549 0.93359 1.43582 1.74088 1.02387 1.08932 1.18801 1.40895 0.80691 0.96962 0.92445 1.24874 0.96898 0.97687 0.98268 1.69970 1.36305 1.36735 1.10326 0.86383 0.79071 0.84882 0.76824 1.21922 1.21710 1.20295 1.21003 0.92743 0.94782 0.90509 1.22512 1.00688 0.93700 0.86114 1.46048 1.11593 1.52695 1.26569 1.18299 0.85641 0.80181 0.82216 1.90766 1.18418 1.56826 1.76074 1.20079 0.94490 1.01633 0.97326 1.21278 0.99860 0.94473 0.92203 1.21040 0.95611 0.99341 0.98555 1.20068 0.93438 0.96528 0.95747 1.20190 0.99230 0.94348 0.94068 1.21870 0.98468 1.00344 0.99566 1.21864 1.01120 0.96046 1.01183 1.20897 0.99569 0.99064 0.94580 1.21342 0.94916 0.96384 0.97610 0.95186 0.90800 0.95622 0.95878 0.95315 0.87443 0.94110 0.93754 0.92657 0.94319 0.92252 0.91455 0.76990 0.84719 0.85581 0.90316 0.92259 0.92401 0.92289 0.92268 0.92290 0.92430 0.85564 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.10 9.96 -35.23 -0.35 -8.45 16 3 C 0.05 0.97 6.28 37.16 0.23 1.21 16 4 C 0.14 3.14 5.83 -4.04 -0.02 3.12 16 5 N -0.57 -13.74 2.45 -173.24 -0.43 -14.16 16 6 C -0.24 -6.63 8.74 -15.06 -0.13 -6.77 16 7 H 0.06 1.59 7.94 -52.48 -0.42 1.17 16 8 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.51 11.36 55.49 0.63 -24.88 16 10 Si 0.90 22.56 29.62 -169.99 -5.03 17.52 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.14 2.70 5.82 -4.05 -0.02 2.67 16 15 C 0.10 1.77 6.00 -4.04 -0.02 1.74 16 16 N -0.72 -10.85 5.51 -61.25 -0.34 -11.19 16 17 C 0.55 8.92 7.77 -12.33 -0.10 8.82 16 18 O -0.54 -10.91 16.35 5.31 0.09 -10.83 16 19 C -0.13 -1.70 5.87 -104.97 -0.62 -2.31 16 20 C -0.06 -0.70 9.60 -39.19 -0.38 -1.08 16 21 C -0.13 -1.20 9.65 -39.64 -0.38 -1.58 16 22 C -0.06 -0.49 4.79 -104.53 -0.50 -0.99 16 23 C -0.06 -0.38 3.09 -91.78 -0.28 -0.67 16 24 C -0.15 -0.84 9.00 37.16 0.33 -0.51 16 25 C -0.14 -0.83 9.01 37.15 0.33 -0.49 16 26 C -0.12 -1.07 8.69 -39.64 -0.34 -1.42 16 27 C -0.08 -0.85 9.54 -39.18 -0.37 -1.23 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.59 6.46 -51.93 -0.34 0.25 16 33 H 0.11 2.86 5.37 -51.92 -0.28 2.58 16 34 H 0.04 0.84 7.84 -51.93 -0.41 0.44 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 37 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 38 H 0.06 1.18 6.47 -51.93 -0.34 0.84 16 39 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 40 H 0.40 4.72 6.51 -40.82 -0.27 4.45 16 41 H 0.13 1.65 7.65 -52.49 -0.40 1.24 16 42 H 0.13 0.91 7.94 -52.48 -0.42 0.50 16 43 H 0.08 0.45 7.87 -51.93 -0.41 0.05 16 44 H 0.06 0.34 7.36 -51.93 -0.38 -0.04 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.13 0.85 7.08 -52.49 -0.37 0.48 16 51 H 0.13 1.05 6.41 -52.48 -0.34 0.72 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -32.72 411.99 -8.98 -41.70 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.51 Total: 1.38 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.25 Total: 2.70 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.13 Total: -50.24 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.26 Total: -19.28 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.72 -8.98 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.856 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds