Wall clock time and date at job start Tue Mar 31 2020 18:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47194 * 303.25889 * 3 2 1 5 5 C 1.50697 * 109.46724 * 183.25137 * 3 2 1 6 6 H 1.08008 * 119.99867 * 239.99978 * 5 3 2 7 7 C 1.37878 * 120.00166 * 60.00704 * 5 3 2 8 8 N 1.31506 * 119.99973 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47449 * 270.00424 * 9 7 5 11 11 H 1.48498 * 109.47028 * 149.99988 * 9 7 5 12 12 H 1.48503 * 109.46962 * 30.00653 * 9 7 5 13 13 N 1.46897 * 109.46749 * 63.25321 * 3 2 1 14 14 C 1.46904 * 110.99929 * 208.66412 * 13 3 2 15 15 H 1.08992 * 109.70832 * 32.99061 * 14 13 3 16 16 C 1.53377 * 109.71383 * 153.63171 * 14 13 3 17 17 C 1.52697 * 108.23325 * 188.73312 * 16 14 13 18 18 C 1.50739 * 110.72484 * 309.08019 * 17 16 14 19 19 C 1.34800 * 122.74108 * 18.06530 * 18 17 16 20 20 C 1.40908 * 119.67014 * 178.90481 * 19 18 17 21 21 C 1.36064 * 119.94412 * 0.27570 * 20 19 18 22 22 C 1.40550 * 118.97593 * 0.14792 * 21 20 19 23 23 O 1.22062 * 120.12448 * 179.85915 * 22 21 20 24 24 N 1.34275 * 119.75663 * 359.83541 * 22 21 20 25 25 C 1.46502 * 119.22989 * 179.76985 * 24 22 21 26 26 C 1.53002 * 109.47281 * 267.79378 * 25 24 22 27 27 O 1.42901 * 109.47203 * 64.99654 * 26 25 24 28 28 C 1.42901 * 113.99590 * 179.97438 * 27 26 25 29 29 C 1.50642 * 122.95795 * 358.92040 * 19 18 17 30 30 H 1.08996 * 109.47279 * 304.48484 * 1 2 3 31 31 H 1.09007 * 109.47298 * 64.48546 * 1 2 3 32 32 H 1.09001 * 109.47115 * 184.48202 * 1 2 3 33 33 H 1.09001 * 109.46869 * 240.00064 * 2 1 3 34 34 H 1.08997 * 109.46784 * 120.00128 * 2 1 3 35 35 H 0.97003 * 119.99958 * 179.97438 * 8 7 5 36 36 H 1.00907 * 110.99889 * 84.71426 * 13 3 2 37 37 H 1.09001 * 109.70551 * 308.40603 * 16 14 13 38 38 H 1.08992 * 109.70717 * 69.03075 * 16 14 13 39 39 H 1.09000 * 109.22900 * 188.75549 * 17 16 14 40 40 H 1.09002 * 109.19161 * 69.37510 * 17 16 14 41 41 H 1.08001 * 120.02796 * 180.25072 * 20 19 18 42 42 H 1.08006 * 120.51342 * 180.12542 * 21 20 19 43 43 H 1.09006 * 109.47013 * 27.78784 * 25 24 22 44 44 H 1.08998 * 109.47498 * 147.78890 * 25 24 22 45 45 H 1.08998 * 109.47071 * 184.99810 * 26 25 24 46 46 H 1.08995 * 109.46689 * 304.99958 * 26 25 24 47 47 H 1.09000 * 109.46900 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47426 * 300.00037 * 28 27 26 49 49 H 1.08996 * 109.46949 * 60.00614 * 28 27 26 50 50 H 1.08998 * 109.22607 * 257.55808 * 29 19 18 51 51 H 1.08997 * 109.22401 * 138.19993 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6298 1.9729 -0.8593 5 6 3.5448 1.4432 -0.0806 6 1 4.1276 1.8958 0.7081 7 6 4.1776 0.8663 -1.1612 8 7 5.4908 0.8673 -1.2317 9 14 3.1696 0.0832 -2.5251 10 1 2.9397 -1.3498 -2.2104 11 1 3.9042 0.1960 -3.8107 12 1 1.8636 0.7809 -2.6384 13 7 1.6155 2.1119 1.2368 14 6 1.4579 3.5571 1.0258 15 1 1.1145 3.7448 0.0086 16 6 0.4413 4.1184 2.0278 17 6 0.1391 5.5647 1.6424 18 6 1.4152 6.3466 1.4623 19 6 2.6125 5.7555 1.2775 20 6 3.7615 6.5499 1.0928 21 6 3.6587 7.9066 1.1075 22 6 2.3971 8.4917 1.3115 23 8 2.2813 9.7066 1.3312 24 7 1.3197 7.7092 1.4843 25 6 0.0112 8.3313 1.7012 26 6 -0.2350 8.4912 3.2028 27 8 0.7152 9.4101 3.7460 28 6 0.5715 9.6322 5.1504 29 6 2.7937 4.2601 1.2566 30 1 -0.3633 0.5818 0.8470 31 1 -0.3634 0.4427 -0.9275 32 1 -0.3633 -1.0245 0.0803 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9360 0.4611 -1.9918 36 1 2.2612 1.9246 1.9893 37 1 -0.4749 3.5291 1.9910 38 1 0.8600 4.0855 3.0336 39 1 -0.4582 6.0282 2.4276 40 1 -0.4238 5.5766 0.7090 41 1 4.7230 6.0824 0.9402 42 1 4.5330 8.5244 0.9649 43 1 -0.0092 9.3108 1.2234 44 1 -0.7668 7.7008 1.2706 45 1 -1.2432 8.8715 3.3673 46 1 -0.1268 7.5241 3.6937 47 1 1.3292 10.3405 5.4855 48 1 -0.4199 10.0363 5.3548 49 1 0.6962 8.6888 5.6820 50 1 3.2101 3.9357 2.2103 51 1 3.4829 3.9933 0.4555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:40 Heat of formation + Delta-G solvation = -50.305714 kcal Electronic energy + Delta-G solvation = -30294.601894 eV Core-core repulsion = 26387.225746 eV Total energy + Delta-G solvation = -3907.376148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53847 -38.45959 -38.00261 -36.55635 -35.09022 -34.54635 -32.12544 -31.44810 -30.29564 -29.67874 -28.03523 -26.65924 -26.21041 -24.20474 -23.61004 -22.69110 -22.05891 -21.52454 -20.11130 -19.57763 -17.66724 -17.23018 -16.70936 -16.50363 -16.27050 -15.94576 -15.50014 -15.15748 -14.79693 -14.50529 -14.29712 -14.04173 -13.79136 -13.53969 -13.34184 -13.04070 -12.80960 -12.74042 -12.68563 -12.39653 -12.26738 -12.17340 -11.92798 -11.72105 -11.71964 -11.46235 -11.41819 -10.90695 -10.77183 -10.73837 -10.54147 -10.41320 -10.22358 -9.95085 -9.81079 -9.71138 -9.62701 -9.46389 -9.19280 -8.61339 -7.60754 -7.46347 -6.17637 -4.18644 1.00547 2.10526 2.70229 3.22242 3.33378 3.34725 3.47755 3.83619 4.32450 4.33652 4.60482 4.65618 4.78669 4.82236 4.88229 5.00639 5.05678 5.11822 5.12864 5.13766 5.18616 5.25297 5.38627 5.45807 5.50109 5.53493 5.58410 5.70295 5.81860 5.88657 5.99100 6.02882 6.10203 6.15152 6.17758 6.23280 6.33749 6.52204 6.58106 6.64751 6.67287 6.70059 6.87560 6.91268 6.95021 7.05783 7.22966 7.30121 7.50508 7.96517 8.27970 8.30236 8.42790 8.84450 9.46087 10.94649 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.003186 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.175818 B = 8785.373535 C = 9721.936138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.674 5.674 14 C 0.097 3.903 15 H 0.073 0.927 16 C -0.104 4.104 17 C -0.088 4.088 18 C 0.152 3.848 19 C -0.167 4.167 20 C -0.010 4.010 21 C -0.251 4.251 22 C 0.521 3.479 23 O -0.550 6.550 24 N -0.496 5.496 25 C 0.089 3.911 26 C 0.044 3.956 27 O -0.371 6.371 28 C 0.031 3.969 29 C -0.091 4.091 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.264 0.736 36 H 0.337 0.663 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.050 10.742 9.013 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.302 5.302 14 C -0.014 4.014 15 H 0.092 0.908 16 C -0.143 4.143 17 C -0.126 4.126 18 C 0.046 3.954 19 C -0.173 4.173 20 C -0.032 4.032 21 C -0.272 4.272 22 C 0.323 3.677 23 O -0.433 6.433 24 N -0.209 5.209 25 C -0.033 4.033 26 C -0.033 4.033 27 O -0.289 6.289 28 C -0.066 4.066 29 C -0.130 4.130 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.525 11.425 8.704 19.729 hybrid contribution 0.610 -0.411 -0.692 1.010 sum -12.915 11.014 8.012 18.770 Atomic orbital electron populations 1.21736 0.97640 0.99473 1.01250 1.21829 0.93805 0.99475 1.00342 1.19634 0.94251 0.90512 0.88132 0.95120 1.21752 0.90177 1.38636 1.07813 0.90506 1.24993 0.94676 0.95304 0.97917 1.69901 1.07907 1.44669 1.30850 0.86857 0.80323 0.79963 0.81078 1.20558 1.22718 1.19042 1.60805 1.53637 1.06569 1.09210 1.21437 0.92907 0.88814 0.98230 0.90829 1.21574 1.00761 0.92145 0.99802 1.20793 0.92785 0.96332 1.02701 1.20176 0.96648 0.81943 0.96594 1.19139 0.90954 0.97510 1.09649 1.21645 0.98891 0.93396 0.89219 1.22054 0.97439 0.95717 1.11998 1.16911 0.84572 0.87102 0.79121 1.90921 1.85597 1.12794 1.53979 1.45409 1.10056 1.05583 1.59829 1.21954 0.84293 1.01410 0.95648 1.22939 0.92956 0.93513 0.93933 1.88124 1.54902 1.63686 1.22195 1.22741 1.01278 1.00558 0.81980 1.21172 1.00456 0.87854 1.03495 0.91671 0.94443 0.94930 0.93890 0.92405 0.92625 0.84521 0.90186 0.91678 0.90259 0.89369 0.84759 0.83822 0.87459 0.87743 0.91804 0.92716 0.89616 0.94204 0.94246 0.91161 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.84 37.16 0.37 -2.06 16 2 C -0.12 -2.35 5.12 -26.73 -0.14 -2.49 16 3 C 0.18 3.84 1.60 -68.87 -0.11 3.73 16 4 H 0.03 0.69 6.40 -51.93 -0.33 0.35 16 5 C -0.55 -13.60 7.86 -34.44 -0.27 -13.87 16 6 H 0.08 2.05 7.28 -52.48 -0.38 1.67 16 7 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 8 N -0.90 -25.90 13.96 55.43 0.77 -25.12 16 9 Si 0.89 21.05 24.40 -169.99 -4.15 16.90 16 10 H -0.28 -6.52 6.84 56.52 0.39 -6.13 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 13 N -0.67 -11.49 5.37 -100.91 -0.54 -12.04 16 14 C 0.10 1.44 2.51 -67.67 -0.17 1.27 16 15 H 0.07 1.19 7.33 -51.93 -0.38 0.81 16 16 C -0.10 -1.17 5.62 -26.69 -0.15 -1.32 16 17 C -0.09 -0.86 4.37 -28.02 -0.12 -0.98 16 18 C 0.15 1.92 6.53 -81.66 -0.53 1.39 16 19 C -0.17 -2.38 5.71 -104.86 -0.60 -2.98 16 20 C -0.01 -0.14 9.64 -39.35 -0.38 -0.52 16 21 C -0.25 -3.78 10.00 -39.49 -0.40 -4.17 16 22 C 0.52 8.52 7.04 -15.61 -0.11 8.42 16 23 O -0.55 -10.56 15.96 1.98 0.03 -10.53 16 24 N -0.50 -6.62 2.57 -115.17 -0.30 -6.91 16 25 C 0.09 0.92 5.13 -4.04 -0.02 0.90 16 26 C 0.04 0.42 5.99 37.16 0.22 0.64 16 27 O -0.37 -4.73 9.68 -38.11 -0.37 -5.10 16 28 C 0.03 0.28 11.01 101.05 1.11 1.39 16 29 C -0.09 -1.40 4.43 -28.06 -0.12 -1.52 16 30 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.94 3.22 -51.93 -0.17 0.77 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.34 5.86 7.90 -39.29 -0.31 5.55 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.08 0.60 5.63 -51.93 -0.29 0.31 16 40 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 41 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 43 H 0.11 1.25 7.29 -51.93 -0.38 0.87 16 44 H 0.10 0.73 6.52 -51.93 -0.34 0.40 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.48 6.94 -51.93 -0.36 0.12 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 51 H 0.10 1.83 6.81 -51.93 -0.35 1.48 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -31.61 386.79 -8.59 -40.20 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.35 Total: 7.06 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.52 Total: -10.29 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.07 Total: -44.07 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.34 Total: -15.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.15 Total: 16.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.61 -8.59 -40.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.102 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds