Wall clock time and date at job start Tue Mar 31 2020 18:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47194 * 303.25889 * 3 2 1 5 5 C 1.50697 * 109.46724 * 183.25137 * 3 2 1 6 6 H 1.08008 * 119.99867 * 239.99978 * 5 3 2 7 7 C 1.37878 * 120.00166 * 60.00704 * 5 3 2 8 8 N 1.31506 * 119.99973 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47449 * 270.00424 * 9 7 5 11 11 H 1.48498 * 109.47028 * 149.99988 * 9 7 5 12 12 H 1.48503 * 109.46962 * 30.00653 * 9 7 5 13 13 N 1.46897 * 109.46749 * 63.25321 * 3 2 1 14 14 C 1.46904 * 110.99929 * 208.66412 * 13 3 2 15 15 H 1.08992 * 109.70832 * 32.99061 * 14 13 3 16 16 C 1.53377 * 109.71383 * 153.63171 * 14 13 3 17 17 C 1.52697 * 108.23325 * 188.73312 * 16 14 13 18 18 C 1.50739 * 110.72484 * 309.08019 * 17 16 14 19 19 C 1.34800 * 122.74108 * 18.06530 * 18 17 16 20 20 C 1.40908 * 119.67014 * 178.90481 * 19 18 17 21 21 C 1.36064 * 119.94412 * 0.27570 * 20 19 18 22 22 C 1.40550 * 118.97593 * 0.14792 * 21 20 19 23 23 O 1.22062 * 120.12448 * 179.85915 * 22 21 20 24 24 N 1.34275 * 119.75663 * 359.83541 * 22 21 20 25 25 C 1.46502 * 119.22989 * 179.76985 * 24 22 21 26 26 C 1.53002 * 109.47281 * 267.79378 * 25 24 22 27 27 O 1.42901 * 109.47203 * 64.99654 * 26 25 24 28 28 C 1.42901 * 113.99590 * 179.97438 * 27 26 25 29 29 C 1.50642 * 122.95795 * 358.92040 * 19 18 17 30 30 H 1.08996 * 109.47279 * 304.48484 * 1 2 3 31 31 H 1.09007 * 109.47298 * 64.48546 * 1 2 3 32 32 H 1.09001 * 109.47115 * 184.48202 * 1 2 3 33 33 H 1.09001 * 109.46869 * 240.00064 * 2 1 3 34 34 H 1.08997 * 109.46784 * 120.00128 * 2 1 3 35 35 H 0.97003 * 119.99958 * 179.97438 * 8 7 5 36 36 H 1.00907 * 110.99889 * 84.71426 * 13 3 2 37 37 H 1.09001 * 109.70551 * 308.40603 * 16 14 13 38 38 H 1.08992 * 109.70717 * 69.03075 * 16 14 13 39 39 H 1.09000 * 109.22900 * 188.75549 * 17 16 14 40 40 H 1.09002 * 109.19161 * 69.37510 * 17 16 14 41 41 H 1.08001 * 120.02796 * 180.25072 * 20 19 18 42 42 H 1.08006 * 120.51342 * 180.12542 * 21 20 19 43 43 H 1.09006 * 109.47013 * 27.78784 * 25 24 22 44 44 H 1.08998 * 109.47498 * 147.78890 * 25 24 22 45 45 H 1.08998 * 109.47071 * 184.99810 * 26 25 24 46 46 H 1.08995 * 109.46689 * 304.99958 * 26 25 24 47 47 H 1.09000 * 109.46900 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47426 * 300.00037 * 28 27 26 49 49 H 1.08996 * 109.46949 * 60.00614 * 28 27 26 50 50 H 1.08998 * 109.22607 * 257.55808 * 29 19 18 51 51 H 1.08997 * 109.22401 * 138.19993 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6298 1.9729 -0.8593 5 6 3.5448 1.4432 -0.0806 6 1 4.1276 1.8958 0.7081 7 6 4.1776 0.8663 -1.1612 8 7 5.4908 0.8673 -1.2317 9 14 3.1696 0.0832 -2.5251 10 1 2.9397 -1.3498 -2.2104 11 1 3.9042 0.1960 -3.8107 12 1 1.8636 0.7809 -2.6384 13 7 1.6155 2.1119 1.2368 14 6 1.4579 3.5571 1.0258 15 1 1.1145 3.7448 0.0086 16 6 0.4413 4.1184 2.0278 17 6 0.1391 5.5647 1.6424 18 6 1.4152 6.3466 1.4623 19 6 2.6125 5.7555 1.2775 20 6 3.7615 6.5499 1.0928 21 6 3.6587 7.9066 1.1075 22 6 2.3971 8.4917 1.3115 23 8 2.2813 9.7066 1.3312 24 7 1.3197 7.7092 1.4843 25 6 0.0112 8.3313 1.7012 26 6 -0.2350 8.4912 3.2028 27 8 0.7152 9.4101 3.7460 28 6 0.5715 9.6322 5.1504 29 6 2.7937 4.2601 1.2566 30 1 -0.3633 0.5818 0.8470 31 1 -0.3634 0.4427 -0.9275 32 1 -0.3633 -1.0245 0.0803 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9360 0.4611 -1.9918 36 1 2.2612 1.9246 1.9893 37 1 -0.4749 3.5291 1.9910 38 1 0.8600 4.0855 3.0336 39 1 -0.4582 6.0282 2.4276 40 1 -0.4238 5.5766 0.7090 41 1 4.7230 6.0824 0.9402 42 1 4.5330 8.5244 0.9649 43 1 -0.0092 9.3108 1.2234 44 1 -0.7668 7.7008 1.2706 45 1 -1.2432 8.8715 3.3673 46 1 -0.1268 7.5241 3.6937 47 1 1.3292 10.3405 5.4855 48 1 -0.4199 10.0363 5.3548 49 1 0.6962 8.6888 5.6820 50 1 3.2101 3.9357 2.2103 51 1 3.4829 3.9933 0.4555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:39 Heat of formation + Delta-G solvation = -71.372131 kcal Electronic energy + Delta-G solvation = -30295.515402 eV Core-core repulsion = 26387.225746 eV Total energy + Delta-G solvation = -3908.289656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64819 -39.67920 -38.83901 -37.96799 -36.25800 -35.78823 -34.05741 -32.70696 -31.22645 -30.76700 -29.46605 -27.80198 -27.36586 -25.18137 -24.61990 -24.30145 -23.29767 -22.50447 -21.64119 -20.83667 -18.90746 -18.62219 -18.05660 -17.38486 -17.21955 -17.15461 -16.86538 -16.25555 -15.97507 -15.77250 -15.47134 -15.26795 -14.96260 -14.93145 -14.60023 -14.40282 -14.11341 -13.86421 -13.74964 -13.62175 -13.48666 -13.33935 -13.10253 -13.03937 -12.90672 -12.75114 -12.41833 -12.17320 -12.16664 -12.12123 -11.82838 -11.67190 -11.58846 -11.33156 -11.16333 -11.02890 -10.91988 -10.84524 -10.61875 -10.56107 -9.00145 -8.74438 -8.25937 -6.28282 -0.11389 0.89698 1.32665 1.37825 1.46582 1.66912 2.34319 2.61544 2.86455 3.10360 3.35967 3.54283 3.73643 3.87274 3.95126 3.99331 4.08161 4.15161 4.18416 4.33934 4.40663 4.43876 4.45927 4.48614 4.53757 4.56500 4.58420 4.61963 4.67327 4.74395 4.81414 4.82999 4.93213 5.02184 5.04680 5.08215 5.10469 5.21794 5.24315 5.36272 5.42178 5.47642 5.50667 5.56503 5.60491 5.72005 5.74615 6.12801 6.20573 6.25304 6.50699 6.75132 6.91731 7.07610 7.40201 8.89332 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.003186 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.175818 B = 8785.373535 C = 9721.936138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.190 3.810 4 H 0.024 0.976 5 C -0.530 4.530 6 H 0.047 0.953 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.309 1.309 12 H -0.246 1.246 13 N -0.659 5.659 14 C 0.094 3.906 15 H 0.064 0.936 16 C -0.092 4.092 17 C -0.086 4.086 18 C 0.175 3.825 19 C -0.193 4.193 20 C -0.007 4.007 21 C -0.273 4.273 22 C 0.511 3.489 23 O -0.588 6.588 24 N -0.490 5.490 25 C 0.080 3.920 26 C 0.040 3.960 27 O -0.413 6.413 28 C 0.028 3.972 29 C -0.076 4.076 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.261 0.739 36 H 0.335 0.665 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.065 0.935 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 10.272 9.992 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.080 3.920 4 H 0.042 0.958 5 C -0.569 4.569 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.238 1.238 12 H -0.170 1.170 13 N -0.286 5.286 14 C -0.017 4.017 15 H 0.082 0.918 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.068 3.932 19 C -0.198 4.198 20 C -0.029 4.029 21 C -0.294 4.294 22 C 0.314 3.686 23 O -0.475 6.475 24 N -0.200 5.200 25 C -0.041 4.041 26 C -0.037 4.037 27 O -0.333 6.333 28 C -0.068 4.068 29 C -0.116 4.116 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.115 0.885 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.177 10.952 9.709 23.337 hybrid contribution 2.050 -0.229 -0.905 2.253 sum -16.127 10.723 8.804 21.274 Atomic orbital electron populations 1.21646 0.94437 1.01068 1.01995 1.21775 0.96650 0.97982 0.99318 1.19474 0.91062 0.91823 0.89631 0.95846 1.22131 0.92650 1.36042 1.06093 0.93506 1.25761 0.95382 0.96534 1.00535 1.70051 1.09779 1.47097 1.31860 0.85971 0.79543 0.79620 0.77882 1.19819 1.23803 1.16988 1.60861 1.52599 1.07927 1.07253 1.21583 0.93487 0.87390 0.99241 0.91764 1.21474 1.00058 0.92960 0.98515 1.20987 0.91328 0.94823 1.05227 1.20625 0.97387 0.81823 0.93353 1.19054 0.91894 0.96698 1.12158 1.21705 0.99358 0.93271 0.88538 1.22070 0.97694 0.95936 1.13697 1.17046 0.85540 0.86875 0.79153 1.90890 1.86275 1.14214 1.56071 1.45494 1.10767 1.05678 1.58088 1.22372 0.83404 1.01347 0.96955 1.23131 0.93944 0.93822 0.92761 1.88082 1.56498 1.64725 1.23965 1.22852 1.02352 1.01041 0.80577 1.20899 1.00138 0.88986 1.01537 0.90324 0.94146 0.93081 0.95620 0.92819 0.92997 0.84741 0.88179 0.91211 0.86533 0.86936 0.84821 0.83735 0.89196 0.83494 0.88546 0.91493 0.90192 0.92126 0.93432 0.91626 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.84 71.98 0.71 -3.28 16 2 C -0.12 -4.56 5.12 30.60 0.16 -4.40 16 3 C 0.19 7.73 1.60 44.17 0.07 7.80 16 4 H 0.02 1.01 6.40 -2.39 -0.02 1.00 16 5 C -0.53 -27.08 7.86 25.60 0.20 -26.88 16 6 H 0.05 2.62 7.28 -2.91 -0.02 2.60 16 7 C 0.02 0.86 5.45 84.66 0.46 1.32 16 8 N -0.95 -57.10 13.96 21.45 0.30 -56.80 16 9 Si 0.94 43.64 24.40 68.60 1.67 45.31 16 10 H -0.27 -12.19 6.84 99.48 0.68 -11.51 16 11 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.25 -10.49 6.53 99.48 0.65 -9.84 16 13 N -0.66 -21.28 5.37 -473.17 -2.54 -23.82 16 14 C 0.09 2.59 2.51 44.94 0.11 2.70 16 15 H 0.06 1.93 7.33 -2.39 -0.02 1.91 16 16 C -0.09 -1.64 5.62 30.62 0.17 -1.47 16 17 C -0.09 -1.22 4.37 29.76 0.13 -1.09 16 18 C 0.18 3.99 6.53 41.04 0.27 4.26 16 19 C -0.19 -5.43 5.71 -20.02 -0.11 -5.55 16 20 C -0.01 -0.20 9.64 22.42 0.22 0.01 16 21 C -0.27 -8.58 10.00 22.33 0.22 -8.35 16 22 C 0.51 16.85 7.04 84.88 0.60 17.44 16 23 O -0.59 -23.14 15.96 -2.76 -0.04 -23.18 16 24 N -0.49 -12.14 2.57 -636.63 -1.64 -13.78 16 25 C 0.08 1.38 5.13 86.38 0.44 1.82 16 26 C 0.04 0.61 5.99 71.98 0.43 1.04 16 27 O -0.41 -9.87 9.68 -146.22 -1.42 -11.29 16 28 C 0.03 0.45 11.01 113.37 1.25 1.70 16 29 C -0.08 -2.37 4.43 29.73 0.13 -2.24 16 30 H 0.08 2.13 7.57 -2.39 -0.02 2.11 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 1.07 3.22 -2.39 -0.01 1.06 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.34 11.33 7.90 -89.69 -0.71 10.62 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.24 8.10 -2.39 -0.02 1.23 16 39 H 0.12 0.95 5.63 -2.39 -0.01 0.93 16 40 H 0.11 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.09 1.95 7.29 -2.38 -0.02 1.93 16 44 H 0.15 1.23 6.52 -2.39 -0.02 1.22 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.84 6.94 -2.39 -0.02 0.82 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 2.04 7.92 -2.39 -0.02 2.02 16 51 H 0.05 2.14 6.81 -2.39 -0.02 2.13 16 Total: -1.00 -73.29 386.79 1.93 -71.37 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.14 Total: 27.36 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.46 Total: -15.17 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -3.88 Total: -94.40 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.46 Total: -34.47 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.67 Total: 45.31 kcal Total: -73.29 1.93 -71.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.007 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds