Wall clock time and date at job start Tue Mar 31 2020 18:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 H 1.09000 * 109.47100 * 179.68333 * 3 2 1 5 5 C 1.50698 * 109.47227 * 299.68375 * 3 2 1 6 6 H 1.07998 * 119.99808 * 119.99884 * 5 3 2 7 7 C 1.37875 * 120.00142 * 300.00333 * 5 3 2 8 8 N 1.31516 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47530 * 59.99248 * 9 7 5 11 11 H 1.48500 * 109.47388 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47091 * 299.99568 * 9 7 5 13 13 N 1.46905 * 109.46715 * 59.68547 * 3 2 1 14 14 C 1.46899 * 110.99725 * 86.37007 * 13 3 2 15 15 H 1.08997 * 109.70974 * 326.90121 * 14 13 3 16 16 C 1.53366 * 109.70832 * 206.31310 * 14 13 3 17 17 C 1.52692 * 108.25621 * 171.34822 * 16 14 13 18 18 C 1.50734 * 110.72130 * 50.98702 * 17 16 14 19 19 C 1.34814 * 122.73411 * 341.87996 * 18 17 16 20 20 C 1.40905 * 119.66519 * 181.37195 * 19 18 17 21 21 C 1.36074 * 119.94365 * 359.39207 * 20 19 18 22 22 C 1.40548 * 118.97173 * 359.88042 * 21 20 19 23 23 O 1.22056 * 120.11859 * 180.23400 * 22 21 20 24 24 N 1.34277 * 119.76233 * 0.20496 * 22 21 20 25 25 C 1.46494 * 119.23034 * 180.15503 * 24 22 21 26 26 C 1.53003 * 109.46914 * 90.00409 * 25 24 22 27 27 O 1.42897 * 109.47194 * 65.00031 * 26 25 24 28 28 C 1.42897 * 114.00323 * 179.97438 * 27 26 25 29 29 C 1.50637 * 122.95731 * 1.52338 * 19 18 17 30 30 H 1.09006 * 109.47005 * 56.55890 * 1 2 3 31 31 H 1.09001 * 109.47172 * 176.56397 * 1 2 3 32 32 H 1.09004 * 109.46988 * 296.56325 * 1 2 3 33 33 H 1.09001 * 109.47113 * 240.00236 * 2 1 3 34 34 H 1.08999 * 109.47503 * 120.00623 * 2 1 3 35 35 H 0.96996 * 120.00214 * 179.97438 * 8 7 5 36 36 H 1.00897 * 110.99759 * 210.32068 * 13 3 2 37 37 H 1.08998 * 109.70578 * 51.65477 * 16 14 13 38 38 H 1.08996 * 109.74339 * 291.05802 * 16 14 13 39 39 H 1.09004 * 109.22317 * 290.67092 * 17 16 14 40 40 H 1.08999 * 109.19580 * 171.28979 * 17 16 14 41 41 H 1.07997 * 120.03129 * 179.40814 * 20 19 18 42 42 H 1.08000 * 120.50985 * 179.91137 * 21 20 19 43 43 H 1.09001 * 109.47704 * 330.00972 * 25 24 22 44 44 H 1.09001 * 109.47224 * 210.00197 * 25 24 22 45 45 H 1.08997 * 109.47027 * 304.99924 * 26 25 24 46 46 H 1.09003 * 109.47064 * 184.99611 * 26 25 24 47 47 H 1.09002 * 109.47338 * 299.99842 * 28 27 26 48 48 H 1.09008 * 109.47286 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.46968 * 59.99979 * 28 27 26 50 50 H 1.08994 * 109.22659 * 102.42621 * 29 19 18 51 51 H 1.08997 * 109.22500 * 221.78564 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0057 5 6 1.5441 2.1507 -1.2343 6 1 0.9227 3.0290 -1.1401 7 6 1.8836 1.6773 -2.4840 8 7 2.6407 0.6081 -2.5988 9 14 1.2695 2.5556 -4.0140 10 1 1.7650 3.9554 -4.0138 11 1 1.7711 1.8536 -5.2226 12 1 -0.2155 2.5562 -4.0219 13 7 1.5441 2.1372 1.1957 14 6 2.4393 1.9199 2.3399 15 1 2.8819 0.9258 2.2768 16 6 1.6488 2.0520 3.6475 17 6 2.5501 1.6104 4.7981 18 6 3.8789 2.3194 4.7372 19 6 4.3299 2.9280 3.6220 20 6 5.5956 3.5472 3.6288 21 6 6.3497 3.5390 4.7615 22 6 5.8438 2.9092 5.9116 23 8 6.5007 2.8931 6.9402 24 7 4.6349 2.3258 5.8749 25 6 4.1175 1.6758 7.0814 26 6 3.3257 2.6910 7.9081 27 8 2.1701 3.1039 7.1759 28 6 1.3565 4.0568 7.8629 29 6 3.5370 2.9866 2.3426 30 1 -0.3633 0.5664 -0.8576 31 1 -0.3633 -1.0258 -0.0616 32 1 -0.3633 0.4596 0.9192 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.8792 0.2748 -3.4779 36 1 1.4195 3.1222 1.0160 37 1 0.7645 1.4160 3.6082 38 1 1.3488 3.0898 3.7931 39 1 2.7140 0.5347 4.7331 40 1 2.0624 1.8425 5.7449 41 1 5.9669 4.0282 2.7359 42 1 7.3217 4.0095 4.7765 43 1 4.9491 1.2945 7.6740 44 1 3.4647 0.8502 6.7978 45 1 3.9528 3.5579 8.1164 46 1 3.0161 2.2325 8.8472 47 1 1.0060 3.6263 8.8009 48 1 0.5007 4.3194 7.2409 49 1 1.9425 4.9522 8.0706 50 1 3.0912 3.9761 2.2416 51 1 4.2031 2.8059 1.4989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:53 Heat of formation + Delta-G solvation = -55.807084 kcal Electronic energy + Delta-G solvation = -30333.527893 eV Core-core repulsion = 26425.913188 eV Total energy + Delta-G solvation = -3907.614705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66338 -38.42211 -38.23839 -36.47453 -35.10367 -34.44714 -32.07037 -30.84261 -30.21646 -29.67784 -27.81530 -26.68351 -25.58850 -24.39198 -23.76258 -23.20309 -22.22263 -21.46860 -19.78423 -18.95264 -17.71601 -17.30266 -16.60774 -16.52686 -16.29927 -15.99009 -15.52998 -14.99702 -14.76203 -14.41593 -14.18707 -13.92047 -13.70906 -13.56732 -13.35369 -12.99000 -12.90389 -12.74311 -12.50561 -12.37939 -12.22246 -12.02451 -11.92014 -11.68854 -11.44237 -11.38005 -10.93237 -10.78671 -10.61729 -10.51630 -10.48604 -10.29469 -10.11487 -10.02148 -9.86057 -9.80225 -9.59906 -9.36873 -8.78784 -8.47410 -7.70928 -7.22583 -6.02549 -4.08132 0.92121 1.94819 2.59740 3.29709 3.31696 3.35093 3.37330 3.66914 4.38175 4.41574 4.51114 4.63818 4.75936 4.89889 4.96021 4.98974 5.06546 5.11849 5.13504 5.20728 5.27160 5.29669 5.38886 5.42014 5.42949 5.52255 5.64809 5.78849 5.89219 6.04458 6.06919 6.13925 6.19738 6.29457 6.49608 6.54077 6.54653 6.63595 6.68274 6.70599 6.75547 6.86901 7.18189 7.23565 7.34221 7.49799 7.73951 7.79072 7.85385 8.05501 8.26911 8.39481 8.67175 9.01748 9.56896 11.03119 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003016 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.928237 B = 9280.411743 C =10065.976189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.088 3.912 15 H 0.074 0.926 16 C -0.097 4.097 17 C -0.101 4.101 18 C 0.185 3.815 19 C -0.182 4.182 20 C -0.004 4.004 21 C -0.261 4.261 22 C 0.516 3.484 23 O -0.570 6.570 24 N -0.494 5.494 25 C 0.089 3.911 26 C 0.045 3.955 27 O -0.383 6.383 28 C 0.031 3.969 29 C -0.088 4.088 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.009 0.991 35 H 0.261 0.739 36 H 0.331 0.669 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 3.577 18.878 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.307 5.307 14 C -0.023 4.023 15 H 0.092 0.908 16 C -0.136 4.136 17 C -0.138 4.138 18 C 0.079 3.921 19 C -0.187 4.187 20 C -0.025 4.025 21 C -0.282 4.282 22 C 0.319 3.681 23 O -0.455 6.455 24 N -0.205 5.205 25 C -0.033 4.033 26 C -0.032 4.032 27 O -0.302 6.302 28 C -0.065 4.065 29 C -0.127 4.127 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.131 0.869 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.148 2.843 19.378 19.586 hybrid contribution 0.707 1.213 -0.968 1.706 sum 0.558 4.056 18.410 18.859 Atomic orbital electron populations 1.21445 0.97572 0.97284 1.01358 1.21445 0.94971 0.98385 0.99342 1.19125 0.92976 0.91332 0.85637 0.98048 1.21158 1.31671 1.11962 0.90410 0.92403 1.24871 0.95040 0.94978 0.98874 1.69869 1.36521 1.22670 1.23654 0.86670 0.79240 0.79656 0.82477 1.20414 1.21415 1.20241 1.60785 1.47551 1.16172 1.06213 1.21643 0.90948 0.97609 0.92107 0.90779 1.21493 0.97812 1.01897 0.92404 1.21080 0.90704 0.99114 1.02947 1.20277 0.92548 0.94612 0.84657 1.19040 0.97265 1.06271 0.96159 1.21619 0.92070 0.91128 0.97727 1.21960 1.03463 1.09543 0.93266 1.17018 0.80181 0.80544 0.90376 1.90905 1.57995 1.63005 1.33632 1.45484 1.16908 1.47191 1.10945 1.22031 0.99300 0.95622 0.86326 1.22892 0.87473 0.98188 0.94656 1.87866 1.36900 1.61469 1.43968 1.22767 0.94938 0.91495 0.97324 1.21120 0.98080 1.00656 0.92858 0.92610 0.96924 0.93873 0.89644 0.97266 0.92924 0.85095 0.90259 0.91809 0.89944 0.87063 0.84972 0.83777 0.86932 0.88025 0.92343 0.91437 0.94012 0.89246 0.94164 0.90906 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.52 37.16 0.35 -2.20 16 2 C -0.10 -2.38 5.58 -26.73 -0.15 -2.53 16 3 C 0.22 5.01 2.12 -68.86 -0.15 4.86 16 4 H 0.00 0.05 7.41 -51.93 -0.38 -0.34 16 5 C -0.51 -13.07 7.28 -34.44 -0.25 -13.32 16 6 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.39 11.32 55.43 0.63 -23.77 16 9 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -12.74 5.37 -100.72 -0.54 -13.29 16 14 C 0.09 1.39 2.32 -67.49 -0.16 1.23 16 15 H 0.07 1.29 7.21 -51.93 -0.37 0.92 16 16 C -0.10 -1.26 5.61 -26.70 -0.15 -1.41 16 17 C -0.10 -1.14 4.25 -28.02 -0.12 -1.26 16 18 C 0.19 2.37 6.24 -81.66 -0.51 1.86 16 19 C -0.18 -2.49 5.71 -104.86 -0.60 -3.09 16 20 C 0.00 -0.05 9.64 -39.35 -0.38 -0.43 16 21 C -0.26 -3.56 10.00 -39.49 -0.40 -3.95 16 22 C 0.52 7.75 7.40 -15.61 -0.12 7.63 16 23 O -0.57 -9.94 16.61 4.87 0.08 -9.86 16 24 N -0.49 -6.30 2.58 -115.18 -0.30 -6.60 16 25 C 0.09 0.87 5.35 -4.04 -0.02 0.85 16 26 C 0.05 0.40 6.28 37.16 0.23 0.63 16 27 O -0.38 -3.67 7.46 -35.23 -0.26 -3.93 16 28 C 0.03 0.22 11.01 101.05 1.11 1.34 16 29 C -0.09 -1.28 4.99 -27.88 -0.14 -1.42 16 30 H 0.05 1.30 7.11 -51.93 -0.37 0.93 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.87 7.71 -51.93 -0.40 0.47 16 33 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 34 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.33 6.17 7.76 -39.29 -0.31 5.87 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 40 H 0.11 1.16 4.08 -51.93 -0.21 0.94 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 1.10 7.35 -51.93 -0.38 0.71 16 44 H 0.10 0.81 6.38 -51.93 -0.33 0.48 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 49 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 51 H 0.07 1.21 7.74 -51.93 -0.40 0.81 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -29.81 392.30 -9.49 -39.30 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.46 Total: 6.28 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.53 Total: -9.59 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.21 Total: -43.65 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.18 Total: -13.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.81 -9.49 -39.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.507 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds