Wall clock time and date at job start Tue Mar 31 2020 18:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 H 1.09000 * 109.47100 * 179.68333 * 3 2 1 5 5 C 1.50698 * 109.47227 * 299.68375 * 3 2 1 6 6 H 1.07998 * 119.99808 * 119.99884 * 5 3 2 7 7 C 1.37875 * 120.00142 * 300.00333 * 5 3 2 8 8 N 1.31516 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47530 * 59.99248 * 9 7 5 11 11 H 1.48500 * 109.47388 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47091 * 299.99568 * 9 7 5 13 13 N 1.46905 * 109.46715 * 59.68547 * 3 2 1 14 14 C 1.46899 * 110.99725 * 86.37007 * 13 3 2 15 15 H 1.08997 * 109.70974 * 326.90121 * 14 13 3 16 16 C 1.53366 * 109.70832 * 206.31310 * 14 13 3 17 17 C 1.52692 * 108.25621 * 171.34822 * 16 14 13 18 18 C 1.50734 * 110.72130 * 50.98702 * 17 16 14 19 19 C 1.34814 * 122.73411 * 341.87996 * 18 17 16 20 20 C 1.40905 * 119.66519 * 181.37195 * 19 18 17 21 21 C 1.36074 * 119.94365 * 359.39207 * 20 19 18 22 22 C 1.40548 * 118.97173 * 359.88042 * 21 20 19 23 23 O 1.22056 * 120.11859 * 180.23400 * 22 21 20 24 24 N 1.34277 * 119.76233 * 0.20496 * 22 21 20 25 25 C 1.46494 * 119.23034 * 180.15503 * 24 22 21 26 26 C 1.53003 * 109.46914 * 90.00409 * 25 24 22 27 27 O 1.42897 * 109.47194 * 65.00031 * 26 25 24 28 28 C 1.42897 * 114.00323 * 179.97438 * 27 26 25 29 29 C 1.50637 * 122.95731 * 1.52338 * 19 18 17 30 30 H 1.09006 * 109.47005 * 56.55890 * 1 2 3 31 31 H 1.09001 * 109.47172 * 176.56397 * 1 2 3 32 32 H 1.09004 * 109.46988 * 296.56325 * 1 2 3 33 33 H 1.09001 * 109.47113 * 240.00236 * 2 1 3 34 34 H 1.08999 * 109.47503 * 120.00623 * 2 1 3 35 35 H 0.96996 * 120.00214 * 179.97438 * 8 7 5 36 36 H 1.00897 * 110.99759 * 210.32068 * 13 3 2 37 37 H 1.08998 * 109.70578 * 51.65477 * 16 14 13 38 38 H 1.08996 * 109.74339 * 291.05802 * 16 14 13 39 39 H 1.09004 * 109.22317 * 290.67092 * 17 16 14 40 40 H 1.08999 * 109.19580 * 171.28979 * 17 16 14 41 41 H 1.07997 * 120.03129 * 179.40814 * 20 19 18 42 42 H 1.08000 * 120.50985 * 179.91137 * 21 20 19 43 43 H 1.09001 * 109.47704 * 330.00972 * 25 24 22 44 44 H 1.09001 * 109.47224 * 210.00197 * 25 24 22 45 45 H 1.08997 * 109.47027 * 304.99924 * 26 25 24 46 46 H 1.09003 * 109.47064 * 184.99611 * 26 25 24 47 47 H 1.09002 * 109.47338 * 299.99842 * 28 27 26 48 48 H 1.09008 * 109.47286 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.46968 * 59.99979 * 28 27 26 50 50 H 1.08994 * 109.22659 * 102.42621 * 29 19 18 51 51 H 1.08997 * 109.22500 * 221.78564 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0057 5 6 1.5441 2.1507 -1.2343 6 1 0.9227 3.0290 -1.1401 7 6 1.8836 1.6773 -2.4840 8 7 2.6407 0.6081 -2.5988 9 14 1.2695 2.5556 -4.0140 10 1 1.7650 3.9554 -4.0138 11 1 1.7711 1.8536 -5.2226 12 1 -0.2155 2.5562 -4.0219 13 7 1.5441 2.1372 1.1957 14 6 2.4393 1.9199 2.3399 15 1 2.8819 0.9258 2.2768 16 6 1.6488 2.0520 3.6475 17 6 2.5501 1.6104 4.7981 18 6 3.8789 2.3194 4.7372 19 6 4.3299 2.9280 3.6220 20 6 5.5956 3.5472 3.6288 21 6 6.3497 3.5390 4.7615 22 6 5.8438 2.9092 5.9116 23 8 6.5007 2.8931 6.9402 24 7 4.6349 2.3258 5.8749 25 6 4.1175 1.6758 7.0814 26 6 3.3257 2.6910 7.9081 27 8 2.1701 3.1039 7.1759 28 6 1.3565 4.0568 7.8629 29 6 3.5370 2.9866 2.3426 30 1 -0.3633 0.5664 -0.8576 31 1 -0.3633 -1.0258 -0.0616 32 1 -0.3633 0.4596 0.9192 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.8792 0.2748 -3.4779 36 1 1.4195 3.1222 1.0160 37 1 0.7645 1.4160 3.6082 38 1 1.3488 3.0898 3.7931 39 1 2.7140 0.5347 4.7331 40 1 2.0624 1.8425 5.7449 41 1 5.9669 4.0282 2.7359 42 1 7.3217 4.0095 4.7765 43 1 4.9491 1.2945 7.6740 44 1 3.4647 0.8502 6.7978 45 1 3.9528 3.5579 8.1164 46 1 3.0161 2.2325 8.8472 47 1 1.0060 3.6263 8.8009 48 1 0.5007 4.3194 7.2409 49 1 1.9425 4.9522 8.0706 50 1 3.0912 3.9761 2.2416 51 1 4.2031 2.8059 1.4989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:52 Heat of formation + Delta-G solvation = -72.690600 kcal Electronic energy + Delta-G solvation = -30334.260017 eV Core-core repulsion = 26425.913188 eV Total energy + Delta-G solvation = -3908.346830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71245 -39.66322 -38.95760 -37.89728 -36.26593 -35.74405 -33.77463 -32.31164 -31.27390 -30.72541 -29.25854 -27.45256 -27.18219 -25.25289 -25.08846 -24.76107 -23.48285 -22.38735 -21.11758 -20.61106 -18.76031 -18.30986 -18.11211 -17.43836 -17.27672 -17.12184 -16.74080 -16.32105 -15.83015 -15.56486 -15.52211 -15.27775 -15.13344 -14.86851 -14.46481 -14.37813 -13.87784 -13.86243 -13.74764 -13.57310 -13.39509 -13.23020 -13.07612 -12.89456 -12.78504 -12.74644 -12.42025 -12.26733 -12.23202 -11.90597 -11.82200 -11.63290 -11.49869 -11.34278 -11.14336 -11.02969 -10.82826 -10.70295 -10.64756 -10.45824 -8.87455 -8.77074 -8.03299 -6.14390 -0.11671 0.82428 1.46134 1.47328 1.53703 1.61875 2.47168 2.55449 2.70821 3.25821 3.40502 3.57126 3.73957 3.88137 3.90620 4.00486 4.06260 4.11877 4.20934 4.36162 4.42899 4.46138 4.50474 4.56702 4.57562 4.60224 4.65145 4.73955 4.77818 4.88496 4.89460 4.95447 5.00343 5.04616 5.08131 5.13997 5.24279 5.35521 5.40199 5.44881 5.46150 5.52984 5.64689 5.69710 5.79564 5.92446 6.01106 6.09102 6.14042 6.37596 6.61746 6.92078 6.94463 7.16085 7.54583 9.01115 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003016 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.928237 B = 9280.411743 C =10065.976189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.225 3.775 4 H -0.033 1.033 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.671 5.671 14 C 0.088 3.912 15 H 0.056 0.944 16 C -0.086 4.086 17 C -0.094 4.094 18 C 0.192 3.808 19 C -0.198 4.198 20 C 0.001 3.999 21 C -0.275 4.275 22 C 0.504 3.496 23 O -0.603 6.603 24 N -0.489 5.489 25 C 0.080 3.920 26 C 0.050 3.950 27 O -0.399 6.399 28 C 0.027 3.973 29 C -0.076 4.076 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.258 0.742 36 H 0.333 0.667 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.036 0.964 50 H 0.079 0.921 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 3.837 20.207 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.117 3.883 4 H -0.015 1.015 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.198 1.198 13 N -0.300 5.300 14 C -0.022 4.022 15 H 0.075 0.925 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.085 3.915 19 C -0.203 4.203 20 C -0.021 4.021 21 C -0.296 4.296 22 C 0.309 3.691 23 O -0.491 6.491 24 N -0.199 5.199 25 C -0.040 4.040 26 C -0.027 4.027 27 O -0.319 6.319 28 C -0.069 4.069 29 C -0.116 4.116 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.056 0.944 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.054 0.946 50 H 0.097 0.903 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.841 3.113 20.726 21.040 hybrid contribution 1.206 1.125 -1.339 2.124 sum -0.635 4.238 19.388 19.856 Atomic orbital electron populations 1.21304 0.95990 0.98107 1.01004 1.21326 0.96247 0.98018 0.98253 1.18860 0.90834 0.91813 0.86809 1.01498 1.21474 1.31051 1.11863 0.91405 0.92347 1.25565 0.95371 0.95623 1.01572 1.70012 1.37790 1.23989 1.23895 0.85770 0.78799 0.78739 0.79253 1.19810 1.21678 1.19765 1.60720 1.48010 1.15945 1.05299 1.21672 0.91292 0.96967 0.92307 0.92547 1.21368 0.97670 1.02446 0.90924 1.21108 0.89460 0.99588 1.02975 1.20507 0.92966 0.93722 0.84339 1.19020 0.97694 1.07494 0.96057 1.21750 0.91651 0.90592 0.98080 1.22065 1.04154 1.10152 0.93199 1.17244 0.80759 0.80834 0.90293 1.90879 1.59008 1.64533 1.34674 1.45551 1.16234 1.46337 1.11795 1.22339 0.99829 0.96467 0.85392 1.22853 0.87030 0.97283 0.95506 1.87792 1.37086 1.62044 1.44937 1.22896 0.94713 0.91063 0.98179 1.20919 0.97426 1.00506 0.92733 0.94844 0.95293 0.92373 0.92883 0.96177 0.93260 0.84895 0.89842 0.91276 0.88599 0.85318 0.83416 0.82959 0.87039 0.85690 0.94376 0.88476 0.92252 0.88565 0.94564 0.90308 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.45 9.52 71.98 0.69 -3.76 16 2 C -0.10 -4.61 5.58 30.59 0.17 -4.44 16 3 C 0.23 10.50 2.12 44.17 0.09 10.60 16 4 H -0.03 -1.72 7.41 -2.39 -0.02 -1.74 16 5 C -0.52 -26.52 7.28 25.60 0.19 -26.33 16 6 H 0.06 2.92 7.60 -2.91 -0.02 2.90 16 7 C 0.02 0.94 5.30 84.65 0.45 1.39 16 8 N -0.92 -51.37 11.32 21.45 0.24 -51.12 16 9 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 N -0.67 -24.68 5.37 -472.56 -2.54 -27.22 16 14 C 0.09 2.69 2.32 45.06 0.10 2.79 16 15 H 0.06 1.94 7.21 -2.39 -0.02 1.92 16 16 C -0.09 -1.99 5.61 30.61 0.17 -1.82 16 17 C -0.09 -1.86 4.25 29.76 0.13 -1.73 16 18 C 0.19 4.60 6.24 41.04 0.26 4.85 16 19 C -0.20 -5.21 5.71 -20.02 -0.11 -5.33 16 20 C 0.00 0.03 9.64 22.42 0.22 0.24 16 21 C -0.27 -7.42 10.00 22.33 0.22 -7.19 16 22 C 0.50 15.00 7.40 84.88 0.63 15.63 16 23 O -0.60 -21.12 16.61 -5.50 -0.09 -21.21 16 24 N -0.49 -11.85 2.58 -636.66 -1.64 -13.49 16 25 C 0.08 1.41 5.35 86.38 0.46 1.88 16 26 C 0.05 0.78 6.28 71.98 0.45 1.23 16 27 O -0.40 -6.56 7.46 -148.98 -1.11 -7.67 16 28 C 0.03 0.33 11.01 113.37 1.25 1.57 16 29 C -0.08 -2.20 4.99 29.85 0.15 -2.05 16 30 H 0.03 1.52 7.11 -2.38 -0.02 1.50 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 2.22 7.71 -2.39 -0.02 2.20 16 33 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 34 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 35 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.33 12.10 7.76 -89.70 -0.70 11.40 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.10 1.72 8.06 -2.38 -0.02 1.70 16 40 H 0.13 2.21 4.08 -2.39 -0.01 2.20 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.11 2.02 7.35 -2.39 -0.02 2.01 16 44 H 0.13 1.59 6.38 -2.39 -0.02 1.58 16 45 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 51 H 0.05 1.75 7.74 -2.39 -0.02 1.73 16 Total: -1.00 -64.77 392.30 2.62 -62.14 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.23 Total: 26.80 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.51 Total: -12.47 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.94 Total: -91.84 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.20 Total: -28.89 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.77 2.62 -62.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.547 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds