Wall clock time and date at job start Tue Mar 31 2020 19:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 O 1.42900 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.35996 * 116.99393 * 180.02562 * 4 3 2 6 6 C 1.38567 * 120.07769 * 359.97438 * 5 4 3 7 7 C 1.38234 * 120.00115 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.14872 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.92791 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.46582 * 270.01731 * 9 8 7 11 11 C 1.46899 * 110.99978 * 294.29987 * 10 9 8 12 12 C 1.53243 * 109.33780 * 172.75137 * 11 10 9 13 13 N 1.47076 * 108.51969 * 53.83192 * 12 11 10 14 14 C 1.36940 * 120.88165 * 128.84403 * 13 12 11 15 15 H 1.07996 * 119.99832 * 206.55451 * 14 13 12 16 16 C 1.38815 * 120.00227 * 26.54657 * 14 13 12 17 17 N 1.31618 * 119.99381 * 17.03473 * 16 14 13 18 18 Si 1.86795 * 120.00036 * 197.03284 * 16 14 13 19 19 H 1.48498 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46972 * 120.00382 * 18 16 14 21 21 H 1.48500 * 109.47006 * 240.00222 * 18 16 14 22 22 C 1.47079 * 118.23675 * 308.80848 * 13 12 11 23 23 C 1.46897 * 110.99624 * 170.00063 * 10 9 8 24 24 C 1.38245 * 120.14395 * 0.02562 * 8 7 6 25 25 C 1.38563 * 119.99965 * 0.02562 * 24 8 7 26 26 O 1.35992 * 120.06835 * 180.02562 * 25 24 8 27 27 C 1.42892 * 117.00402 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46957 * 300.00311 * 1 2 3 29 29 H 1.08998 * 109.47050 * 59.99781 * 1 2 3 30 30 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46957 * 239.99689 * 2 1 3 32 32 H 1.08998 * 109.47050 * 120.00219 * 2 1 3 33 33 H 1.08994 * 109.47096 * 60.00274 * 3 2 1 34 34 H 1.08993 * 109.46966 * 299.99747 * 3 2 1 35 35 H 1.07998 * 119.99481 * 0.05167 * 6 5 4 36 36 H 1.08005 * 119.92593 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47209 * 30.01576 * 9 8 7 38 38 H 1.08999 * 109.46891 * 150.01647 * 9 8 7 39 39 H 1.09001 * 109.48969 * 292.70760 * 11 10 9 40 40 H 1.08999 * 109.49403 * 52.78955 * 11 10 9 41 41 H 1.09000 * 109.62651 * 294.11738 * 12 11 10 42 42 H 1.08998 * 109.62575 * 173.53773 * 12 11 10 43 43 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.63222 * 291.48068 * 22 13 12 45 45 H 1.09012 * 109.78777 * 170.99416 * 22 13 12 46 46 H 1.09001 * 109.49338 * 307.21140 * 23 10 9 47 47 H 1.09002 * 109.49812 * 67.29274 * 23 10 9 48 48 H 1.07997 * 119.99559 * 179.72762 * 24 8 7 49 49 H 1.09007 * 109.47323 * 59.99960 * 27 26 25 50 50 H 1.09009 * 109.47410 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.47313 * 299.99984 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0864 2.6541 -0.0001 6 6 3.3333 3.8172 0.0003 7 6 3.9625 5.0481 0.0003 8 6 5.3431 5.1222 0.0003 9 6 6.0238 6.4667 0.0008 10 7 6.2446 6.9042 -1.3841 11 6 7.1984 6.0217 -2.0693 12 6 7.2634 6.3993 -3.5530 13 7 7.5603 7.8360 -3.6569 14 6 8.5816 8.2872 -4.4498 15 1 9.0721 9.2212 -4.2190 16 6 8.9864 7.5439 -5.5500 17 7 8.2031 6.6028 -6.0327 18 14 10.6429 7.8794 -6.3455 19 1 11.3275 8.9787 -5.6188 20 1 11.4777 6.6526 -6.2868 21 1 10.4406 8.2731 -7.7630 22 6 6.7306 8.7754 -2.8872 23 6 6.6866 8.3043 -1.4297 24 6 6.1004 3.9656 -0.0002 25 6 5.4760 2.7287 -0.0012 26 8 6.2196 1.5900 -0.0012 27 6 7.6403 1.7430 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2547 3.7621 0.0012 36 1 3.3743 5.9539 0.0002 37 1 5.3941 7.1926 0.5152 38 1 6.9821 6.3885 0.5143 39 1 8.1856 6.1355 -1.6214 40 1 6.8712 4.9866 -1.9713 41 1 6.3048 6.1882 -4.0269 42 1 8.0510 5.8263 -4.0424 43 1 8.4858 6.0836 -6.8018 44 1 5.7208 8.7928 -3.2971 45 1 7.1629 9.7750 -2.9361 46 1 5.9883 8.9247 -0.8679 47 1 7.6810 8.3864 -0.9907 48 1 7.1786 4.0263 -0.0047 49 1 7.9456 2.2922 0.8913 50 1 8.1116 0.7600 0.0009 51 1 7.9476 2.2933 -0.8887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:11 Heat of formation + Delta-G solvation = -20.560090 kcal Electronic energy + Delta-G solvation = -29402.964765 eV Core-core repulsion = 25496.878484 eV Total energy + Delta-G solvation = -3906.086281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.59972 -38.66813 -38.28128 -36.83031 -34.50006 -33.96408 -31.67703 -30.32996 -30.11983 -29.82648 -27.77436 -26.94343 -26.34387 -24.37666 -22.91748 -22.49202 -22.40106 -21.28124 -20.87692 -19.06930 -18.38199 -17.08829 -16.75379 -16.55879 -16.48444 -15.63446 -15.16093 -14.88859 -14.65582 -14.49333 -14.41341 -14.31691 -14.19790 -13.56230 -13.45187 -13.21720 -13.08172 -12.87830 -12.53773 -12.49311 -12.37606 -12.00316 -11.64749 -11.58461 -11.45692 -11.38398 -11.15427 -11.01594 -10.97001 -10.92460 -10.74749 -10.70162 -10.41636 -10.25311 -10.02879 -9.72971 -9.57607 -8.63473 -8.49144 -7.81735 -7.67008 -6.64144 -5.75964 -3.17063 1.32895 1.50503 3.09481 3.29543 3.37507 3.45301 3.47503 3.71709 4.49935 4.58439 4.58617 4.61621 4.82716 4.88471 4.93376 4.97992 5.10381 5.14014 5.19352 5.23640 5.25695 5.38532 5.40911 5.45009 5.48189 5.50440 5.55875 5.64745 5.70307 5.77592 5.80667 5.91186 5.94139 5.98248 6.15652 6.17453 6.27414 6.32526 6.35254 6.56943 6.68857 6.71850 6.76548 6.95729 7.06812 7.27845 7.59900 7.63082 7.68922 7.73947 7.84649 8.45479 9.23318 9.86962 10.45733 11.32709 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002633 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.591541 B =10632.962904 C =11007.077287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.307 6.307 5 C 0.096 3.904 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.064 4.064 9 C 0.093 3.907 10 N -0.526 5.526 11 C 0.033 3.967 12 C 0.180 3.820 13 N -0.596 5.596 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C 0.045 3.955 24 C -0.162 4.162 25 C 0.097 3.903 26 O -0.309 6.309 27 C 0.026 3.974 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.132 0.868 49 H 0.052 0.948 50 H 0.098 0.902 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 -9.961 16.479 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.222 6.222 5 C 0.051 3.949 6 C -0.193 4.193 7 C -0.114 4.114 8 C -0.064 4.064 9 C -0.034 4.034 10 N -0.251 5.251 11 C -0.096 4.096 12 C 0.054 3.946 13 N -0.319 5.319 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.022 3.978 23 C -0.085 4.085 24 C -0.181 4.181 25 C 0.052 3.948 26 O -0.223 6.223 27 C -0.069 4.069 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.150 0.850 49 H 0.071 0.929 50 H 0.116 0.884 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.354 -10.460 16.068 22.282 hybrid contribution 1.664 0.492 -0.114 1.739 sum -9.690 -9.968 15.954 21.161 Atomic orbital electron populations 1.21692 0.94376 1.02409 1.02203 1.21464 0.95845 0.95028 1.03721 1.22839 0.79032 0.98631 1.01251 1.86126 1.20582 1.26229 1.89229 1.18147 0.88982 0.85004 1.02809 1.21001 0.99643 0.91535 1.07079 1.20692 0.93787 0.96895 1.00001 1.19485 0.93412 0.94224 0.99323 1.21014 0.98178 0.92923 0.91306 1.61999 1.47790 1.02889 1.12441 1.22977 0.91887 0.95726 0.99019 1.20840 1.00064 0.85128 0.88608 1.44140 1.35118 1.00925 1.51716 1.19231 1.07829 1.06922 1.04016 0.91629 1.25030 0.98784 0.99845 0.96186 1.70048 1.34886 1.25280 1.24494 0.86239 0.84126 0.77549 0.78975 1.20336 1.21619 1.21715 1.20966 0.94707 0.93229 0.88877 1.22635 0.97349 0.88430 1.00046 1.20986 1.00240 0.90692 1.06206 1.18166 0.88171 0.85960 1.02488 1.86134 1.18582 1.28328 1.89211 1.23063 0.78728 1.03681 1.01470 0.92449 0.92296 0.91832 0.90779 0.90943 0.92296 0.92082 0.85082 0.85519 0.90421 0.94785 0.95982 0.91801 0.95656 0.89481 0.93697 0.95700 0.92641 0.91997 0.95464 0.85010 0.92934 0.88361 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.98 6.30 -26.73 -0.17 -1.15 16 3 C 0.06 0.56 4.74 37.16 0.18 0.74 16 4 O -0.31 -4.23 9.92 -34.23 -0.34 -4.57 16 5 C 0.10 1.38 6.70 -39.12 -0.26 1.12 16 6 C -0.17 -2.21 9.04 -39.46 -0.36 -2.56 16 7 C -0.09 -1.26 9.69 -39.58 -0.38 -1.64 16 8 C -0.06 -0.91 4.89 -104.61 -0.51 -1.43 16 9 C 0.09 1.36 5.12 -4.97 -0.03 1.33 16 10 N -0.53 -9.50 4.62 -235.76 -1.09 -10.59 16 11 C 0.03 0.66 5.33 -3.70 -0.02 0.64 16 12 C 0.18 4.46 5.42 -3.60 -0.02 4.44 16 13 N -0.60 -15.35 3.04 -172.01 -0.52 -15.87 16 14 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 15 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 17 N -0.90 -26.60 11.15 55.49 0.62 -25.99 16 18 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 23 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 24 C -0.16 -2.33 6.85 -39.46 -0.27 -2.60 16 25 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16 26 O -0.31 -4.51 10.28 -34.22 -0.35 -4.86 16 27 C 0.03 0.28 9.81 101.05 0.99 1.27 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 34 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 38 H 0.03 0.48 8.07 -51.93 -0.42 0.07 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.22 5.65 -51.93 -0.29 0.93 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.14 7.96 -51.92 -0.41 0.73 16 46 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.13 1.77 6.16 -52.49 -0.32 1.44 16 49 H 0.05 0.50 7.67 -51.92 -0.40 0.10 16 50 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 51 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -32.30 399.78 -10.42 -42.72 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.71 Total: -1.32 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.02 Total: -2.40 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.99 Total: -52.45 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.69 Total: -9.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.30 -10.42 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.164 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds