Wall clock time and date at job start Tue Mar 31 2020 19:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 O 1.42900 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.35996 * 116.99393 * 180.02562 * 4 3 2 6 6 C 1.38567 * 120.07769 * 359.97438 * 5 4 3 7 7 C 1.38234 * 120.00115 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.14872 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.92791 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.46582 * 270.01731 * 9 8 7 11 11 C 1.46899 * 110.99978 * 294.29987 * 10 9 8 12 12 C 1.53243 * 109.33780 * 172.75137 * 11 10 9 13 13 N 1.47076 * 108.51969 * 53.83192 * 12 11 10 14 14 C 1.36940 * 120.88165 * 128.84403 * 13 12 11 15 15 H 1.07996 * 119.99832 * 206.55451 * 14 13 12 16 16 C 1.38815 * 120.00227 * 26.54657 * 14 13 12 17 17 N 1.31618 * 119.99381 * 17.03473 * 16 14 13 18 18 Si 1.86795 * 120.00036 * 197.03284 * 16 14 13 19 19 H 1.48498 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46972 * 120.00382 * 18 16 14 21 21 H 1.48500 * 109.47006 * 240.00222 * 18 16 14 22 22 C 1.47079 * 118.23675 * 308.80848 * 13 12 11 23 23 C 1.46897 * 110.99624 * 170.00063 * 10 9 8 24 24 C 1.38245 * 120.14395 * 0.02562 * 8 7 6 25 25 C 1.38563 * 119.99965 * 0.02562 * 24 8 7 26 26 O 1.35992 * 120.06835 * 180.02562 * 25 24 8 27 27 C 1.42892 * 117.00402 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46957 * 300.00311 * 1 2 3 29 29 H 1.08998 * 109.47050 * 59.99781 * 1 2 3 30 30 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46957 * 239.99689 * 2 1 3 32 32 H 1.08998 * 109.47050 * 120.00219 * 2 1 3 33 33 H 1.08994 * 109.47096 * 60.00274 * 3 2 1 34 34 H 1.08993 * 109.46966 * 299.99747 * 3 2 1 35 35 H 1.07998 * 119.99481 * 0.05167 * 6 5 4 36 36 H 1.08005 * 119.92593 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47209 * 30.01576 * 9 8 7 38 38 H 1.08999 * 109.46891 * 150.01647 * 9 8 7 39 39 H 1.09001 * 109.48969 * 292.70760 * 11 10 9 40 40 H 1.08999 * 109.49403 * 52.78955 * 11 10 9 41 41 H 1.09000 * 109.62651 * 294.11738 * 12 11 10 42 42 H 1.08998 * 109.62575 * 173.53773 * 12 11 10 43 43 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.63222 * 291.48068 * 22 13 12 45 45 H 1.09012 * 109.78777 * 170.99416 * 22 13 12 46 46 H 1.09001 * 109.49338 * 307.21140 * 23 10 9 47 47 H 1.09002 * 109.49812 * 67.29274 * 23 10 9 48 48 H 1.07997 * 119.99559 * 179.72762 * 24 8 7 49 49 H 1.09007 * 109.47323 * 59.99960 * 27 26 25 50 50 H 1.09009 * 109.47410 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.47313 * 299.99984 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0864 2.6541 -0.0001 6 6 3.3333 3.8172 0.0003 7 6 3.9625 5.0481 0.0003 8 6 5.3431 5.1222 0.0003 9 6 6.0238 6.4667 0.0008 10 7 6.2446 6.9042 -1.3841 11 6 7.1984 6.0217 -2.0693 12 6 7.2634 6.3993 -3.5530 13 7 7.5603 7.8360 -3.6569 14 6 8.5816 8.2872 -4.4498 15 1 9.0721 9.2212 -4.2190 16 6 8.9864 7.5439 -5.5500 17 7 8.2031 6.6028 -6.0327 18 14 10.6429 7.8794 -6.3455 19 1 11.3275 8.9787 -5.6188 20 1 11.4777 6.6526 -6.2868 21 1 10.4406 8.2731 -7.7630 22 6 6.7306 8.7754 -2.8872 23 6 6.6866 8.3043 -1.4297 24 6 6.1004 3.9656 -0.0002 25 6 5.4760 2.7287 -0.0012 26 8 6.2196 1.5900 -0.0012 27 6 7.6403 1.7430 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2547 3.7621 0.0012 36 1 3.3743 5.9539 0.0002 37 1 5.3941 7.1926 0.5152 38 1 6.9821 6.3885 0.5143 39 1 8.1856 6.1355 -1.6214 40 1 6.8712 4.9866 -1.9713 41 1 6.3048 6.1882 -4.0269 42 1 8.0510 5.8263 -4.0424 43 1 8.4858 6.0836 -6.8018 44 1 5.7208 8.7928 -3.2971 45 1 7.1629 9.7750 -2.9361 46 1 5.9883 8.9247 -0.8679 47 1 7.6810 8.3864 -0.9907 48 1 7.1786 4.0263 -0.0047 49 1 7.9456 2.2922 0.8913 50 1 8.1116 0.7600 0.0009 51 1 7.9476 2.2933 -0.8887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:10 Heat of formation + Delta-G solvation = -39.717485 kcal Electronic energy + Delta-G solvation = -29403.795492 eV Core-core repulsion = 25496.878484 eV Total energy + Delta-G solvation = -3906.917008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.61459 -39.86681 -39.48895 -38.05789 -36.06467 -34.79453 -33.42661 -31.73617 -31.48907 -31.15839 -29.00096 -27.96782 -27.44621 -25.88816 -24.34668 -24.06566 -23.54584 -22.23847 -21.86646 -20.81654 -19.38415 -18.73154 -18.04987 -17.58792 -17.34827 -17.01796 -16.53629 -16.22302 -15.95157 -15.79564 -15.63247 -15.37225 -15.31124 -14.99553 -14.90182 -14.82857 -14.39962 -14.18585 -13.54590 -13.44911 -13.20329 -13.09555 -12.98958 -12.90499 -12.70753 -12.64485 -12.43923 -12.27208 -12.23250 -12.10603 -12.06476 -11.90057 -11.85325 -11.78064 -11.57805 -11.45236 -11.37185 -10.60742 -9.68013 -9.24044 -8.77216 -8.65998 -7.88167 -5.33072 0.28962 0.45011 1.44790 1.46146 1.57180 2.22534 2.35361 2.49739 2.63002 3.21310 3.28306 3.68706 3.76237 3.78875 3.96727 4.01375 4.05323 4.18146 4.28633 4.30450 4.32575 4.34609 4.36435 4.42046 4.50711 4.54380 4.56969 4.57342 4.66002 4.69115 4.69826 4.73549 4.82001 4.87673 4.90916 5.04089 5.12286 5.14060 5.19358 5.21129 5.30807 5.35949 5.36587 5.60338 5.65469 5.65944 5.73604 6.12164 6.19476 6.27485 6.36803 6.63026 7.12023 7.83212 8.37770 9.18738 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002633 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.591541 B =10632.962904 C =11007.077287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.328 6.328 5 C 0.082 3.918 6 C -0.171 4.171 7 C -0.096 4.096 8 C -0.079 4.079 9 C 0.099 3.901 10 N -0.536 5.536 11 C 0.054 3.946 12 C 0.189 3.811 13 N -0.614 5.614 14 C -0.261 4.261 15 H 0.070 0.930 16 C -0.055 4.055 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.143 3.857 23 C 0.056 3.944 24 C -0.167 4.167 25 C 0.076 3.924 26 O -0.329 6.329 27 C 0.021 3.979 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.040 0.960 39 H 0.019 0.981 40 H 0.071 0.929 41 H -0.008 1.008 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.015 0.985 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.026 0.974 48 H 0.135 0.865 49 H 0.065 0.935 50 H 0.120 0.880 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 -9.181 18.355 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.024 4.024 4 O -0.243 6.243 5 C 0.037 3.963 6 C -0.190 4.190 7 C -0.115 4.115 8 C -0.080 4.080 9 C -0.027 4.027 10 N -0.261 5.261 11 C -0.075 4.075 12 C 0.063 3.937 13 N -0.338 5.338 14 C -0.391 4.391 15 H 0.087 0.913 16 C -0.250 4.250 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.073 4.073 24 C -0.187 4.187 25 C 0.031 3.969 26 O -0.243 6.243 27 C -0.074 4.074 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.044 0.956 48 H 0.153 0.847 49 H 0.084 0.916 50 H 0.138 0.862 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.077 -9.661 17.982 23.717 hybrid contribution 1.794 0.229 -0.679 1.932 sum -10.282 -9.432 17.303 22.228 Atomic orbital electron populations 1.21676 0.92563 1.03211 1.02773 1.21487 0.97288 0.93940 1.03164 1.23127 0.77187 0.99946 1.02188 1.86108 1.22700 1.26298 1.89190 1.18452 0.89209 0.85834 1.02840 1.21290 1.00909 0.90796 1.05956 1.20974 0.93581 0.97838 0.99081 1.19589 0.94055 0.94032 1.00300 1.21056 0.99084 0.93618 0.88988 1.61915 1.46682 1.02583 1.14917 1.22557 0.92531 0.96573 0.95853 1.20552 0.96907 0.84850 0.91406 1.44427 1.35585 1.01819 1.52018 1.19582 1.08448 1.06961 1.04102 0.91252 1.25828 1.02080 1.00010 0.97055 1.70215 1.36614 1.26493 1.25023 0.85187 0.79916 0.77519 0.77716 1.18931 1.21696 1.21915 1.21154 0.93385 0.93051 0.90697 1.22497 0.98508 0.88844 0.97475 1.21069 1.00531 0.90758 1.06303 1.18458 0.88864 0.86286 1.03326 1.86099 1.20181 1.28712 1.89357 1.23270 0.77243 1.05191 1.01690 0.91538 0.92038 0.90963 0.91752 0.91143 0.90705 0.91606 0.82528 0.83565 0.87720 0.94137 0.96275 0.91075 0.99028 0.92792 0.94161 0.96711 0.91891 0.88095 0.95609 0.84711 0.91645 0.86205 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.83 6.30 30.59 0.19 -1.64 16 3 C 0.05 0.91 4.74 71.98 0.34 1.25 16 4 O -0.33 -8.92 9.92 -79.64 -0.79 -9.71 16 5 C 0.08 2.32 6.70 22.57 0.15 2.47 16 6 C -0.17 -4.03 9.04 22.35 0.20 -3.83 16 7 C -0.10 -2.32 9.69 22.27 0.22 -2.11 16 8 C -0.08 -2.12 4.89 -19.86 -0.10 -2.22 16 9 C 0.10 2.60 5.12 85.56 0.44 3.04 16 10 N -0.54 -18.33 4.62 -899.80 -4.16 -22.49 16 11 C 0.05 2.17 5.33 86.38 0.46 2.63 16 12 C 0.19 9.68 5.42 86.35 0.47 10.15 16 13 N -0.61 -32.02 3.04 -698.12 -2.12 -34.14 16 14 C -0.26 -14.65 9.63 84.03 0.81 -13.84 16 15 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 16 C -0.05 -3.12 4.93 84.86 0.42 -2.71 16 17 N -0.94 -57.04 11.15 21.65 0.24 -56.80 16 18 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 22 C 0.14 6.02 6.69 86.35 0.58 6.60 16 23 C 0.06 1.85 5.62 86.38 0.49 2.34 16 24 C -0.17 -4.70 6.85 22.35 0.15 -4.54 16 25 C 0.08 2.27 6.70 22.57 0.15 2.42 16 26 O -0.33 -9.71 10.28 -79.60 -0.82 -10.52 16 27 C 0.02 0.44 9.81 113.37 1.11 1.55 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 34 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 35 H 0.16 2.74 6.30 -2.91 -0.02 2.72 16 36 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.10 2.21 7.91 -2.39 -0.02 2.19 16 38 H 0.04 1.03 8.07 -2.39 -0.02 1.01 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 2.73 5.65 -2.39 -0.01 2.72 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.05 3.09 6.12 -2.39 -0.01 3.08 16 43 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 44 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 2.51 7.96 -2.38 -0.02 2.50 16 46 H 0.10 2.62 7.99 -2.39 -0.02 2.60 16 47 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.14 3.55 6.16 -2.91 -0.02 3.54 16 49 H 0.06 1.20 7.67 -2.38 -0.02 1.19 16 50 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 51 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 Total: -1.00 -71.39 399.78 2.07 -69.32 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.90 Total: 15.96 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.79 Total: 0.82 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -6.04 Total: -113.44 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.61 Total: -20.23 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.39 2.07 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.600 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds