Wall clock time and date at job start Tue Mar 31 2020 19:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 117.00221 * 2 1 4 4 C 1.38563 * 120.07156 * 359.97438 * 3 2 1 5 5 C 1.38237 * 119.99831 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.15028 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.14226 * 359.76030 * 6 5 4 8 8 C 1.50704 * 120.00177 * 180.25954 * 7 6 5 9 9 N 1.46896 * 109.47389 * 132.16424 * 8 7 6 10 10 C 1.46905 * 111.00049 * 288.25922 * 9 8 7 11 11 C 1.53231 * 109.34074 * 172.74283 * 10 9 8 12 12 N 1.47080 * 108.52057 * 53.83292 * 11 10 9 13 13 C 1.36936 * 120.88619 * 128.79229 * 12 11 10 14 14 H 1.08004 * 119.99618 * 331.49629 * 13 12 11 15 15 C 1.38807 * 120.00273 * 151.49396 * 13 12 11 16 16 N 1.31617 * 120.00202 * 160.03822 * 15 13 12 17 17 Si 1.86802 * 120.00245 * 340.03301 * 15 13 12 18 18 H 1.48494 * 109.46875 * 95.05000 * 17 15 13 19 19 H 1.48503 * 109.47288 * 215.05392 * 17 15 13 20 20 H 1.48506 * 109.46778 * 335.05526 * 17 15 13 21 21 C 1.47081 * 118.23625 * 308.81259 * 12 11 10 22 22 C 1.46892 * 111.00126 * 163.95589 * 9 8 7 23 23 C 1.38566 * 120.00207 * 0.51706 * 7 6 5 24 24 O 1.35993 * 120.07540 * 179.74188 * 23 7 6 25 25 C 1.42903 * 116.99773 * 259.34310 * 24 23 7 26 26 C 1.53005 * 109.47043 * 210.19544 * 25 24 23 27 27 C 1.52995 * 109.47211 * 90.19594 * 25 24 23 28 28 H 1.09000 * 109.46761 * 59.99804 * 1 2 3 29 29 H 1.09004 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47132 * 299.99867 * 1 2 3 31 31 H 1.08011 * 119.99963 * 0.04372 * 4 3 2 32 32 H 1.08005 * 119.92369 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.93438 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47344 * 252.16846 * 8 7 6 35 35 H 1.09005 * 109.46773 * 12.16166 * 8 7 6 36 36 H 1.09000 * 109.48955 * 292.70547 * 10 9 8 37 37 H 1.08997 * 109.49030 * 52.78349 * 10 9 8 38 38 H 1.08999 * 109.63306 * 294.12133 * 11 10 9 39 39 H 1.09005 * 109.62892 * 173.53922 * 11 10 9 40 40 H 0.97006 * 120.00529 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.63062 * 291.47389 * 21 12 11 42 42 H 1.09001 * 109.79079 * 170.98831 * 21 12 11 43 43 H 1.09001 * 109.49311 * 307.21516 * 22 9 8 44 44 H 1.09000 * 109.49746 * 67.27090 * 22 9 8 45 45 H 1.09001 * 109.47062 * 330.19298 * 25 24 23 46 46 H 1.08997 * 109.46748 * 59.99875 * 26 25 24 47 47 H 1.08995 * 109.46803 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.46622 * 300.00122 * 26 25 24 49 49 H 1.09001 * 109.47157 * 170.83794 * 27 25 24 50 50 H 1.09006 * 109.47053 * 290.83645 * 27 25 24 51 51 H 1.08997 * 109.47083 * 50.83236 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6056 -0.0011 6 6 3.3030 3.6798 -0.0005 7 6 4.0603 2.5233 0.0055 8 6 5.5649 2.6078 0.0120 9 7 6.1015 1.7095 1.0430 10 6 5.8362 2.2350 2.3890 11 6 6.2464 1.1898 3.4318 12 7 7.6424 0.8014 3.1799 13 6 8.5698 0.8196 4.1872 14 1 8.4592 1.5097 5.0106 15 6 9.6520 -0.0490 4.1501 16 7 10.7273 0.2085 4.8641 17 14 9.5821 -1.5834 3.0871 18 1 10.2153 -1.3045 1.7732 19 1 10.3098 -2.6875 3.7629 20 1 8.1655 -1.9780 2.8800 21 6 8.0161 0.3934 1.8171 22 6 7.5361 1.4699 0.8378 23 6 3.4360 1.2862 0.0003 24 8 4.1796 0.1476 0.0009 25 6 4.3423 -0.5217 -1.2512 26 6 4.4956 -2.0248 -1.0099 27 6 5.5911 0.0117 -1.9560 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2146 2.3196 -0.0002 32 1 1.3343 4.5114 -0.0019 33 1 3.7909 4.6433 -0.0005 34 1 5.9497 2.3117 -0.9639 35 1 5.8703 3.6318 0.2275 36 1 6.4116 3.1478 2.5430 37 1 4.7732 2.4531 2.4913 38 1 5.6018 0.3150 3.3466 39 1 6.1596 1.6161 4.4313 40 1 11.4834 -0.3986 4.8385 41 1 7.5417 -0.5580 1.5766 42 1 9.0990 0.2907 1.7464 43 1 7.7060 1.1331 -0.1849 44 1 8.0879 2.3934 1.0130 45 1 3.4675 -0.3413 -1.8759 46 1 3.6059 -2.4047 -0.5078 47 1 4.6193 -2.5352 -1.9650 48 1 5.3703 -2.2050 -0.3851 49 1 5.8079 -0.6057 -2.8277 50 1 5.4181 1.0402 -2.2730 51 1 6.4370 -0.0193 -1.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:15 Heat of formation + Delta-G solvation = -4.917517 kcal Electronic energy + Delta-G solvation = -31321.134663 eV Core-core repulsion = 27415.726695 eV Total energy + Delta-G solvation = -3905.407968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.64896 -38.65379 -37.86414 -37.09449 -34.53104 -32.95236 -31.82097 -30.71240 -30.19973 -29.58852 -27.67361 -27.07609 -26.92982 -24.48635 -23.13774 -22.71673 -22.12593 -21.22562 -20.79977 -19.26475 -18.09203 -17.33885 -16.81314 -16.46450 -15.97690 -15.41113 -15.20399 -14.97882 -14.58243 -14.40209 -14.29574 -14.16212 -13.92030 -13.76916 -13.32640 -13.20686 -12.85871 -12.71247 -12.37694 -12.24656 -12.21627 -12.14197 -11.98010 -11.81774 -11.66323 -11.54241 -11.32757 -11.11622 -11.02347 -10.76716 -10.61722 -10.47035 -10.19322 -9.94237 -9.73085 -9.61053 -9.38032 -8.62983 -8.54902 -8.11060 -7.74924 -6.80406 -5.86531 -3.21765 1.16428 1.31255 3.11466 3.40362 3.45853 3.56267 3.63897 3.96376 4.36096 4.62900 4.66801 4.76479 4.91952 4.94840 4.99670 5.09949 5.11860 5.13080 5.26324 5.28983 5.29791 5.32183 5.40493 5.43770 5.61761 5.65359 5.72312 5.80512 5.87402 5.89521 5.94334 6.00649 6.10419 6.12808 6.17642 6.21508 6.29814 6.32615 6.33860 6.42726 6.46212 6.55930 6.59608 6.70951 6.82337 7.06323 7.16786 7.59577 7.65829 7.92821 8.06937 8.42198 9.04384 9.81859 10.23932 11.29840 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003981 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.890268 B = 7032.558961 C = 7665.537603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.094 3.906 4 C -0.203 4.203 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.057 4.057 8 C 0.095 3.905 9 N -0.509 5.509 10 C 0.047 3.953 11 C 0.155 3.845 12 N -0.608 5.608 13 C -0.255 4.255 14 H 0.083 0.917 15 C 0.022 3.978 16 N -0.913 5.913 17 Si 0.881 3.119 18 H -0.290 1.290 19 H -0.305 1.305 20 H -0.266 1.266 21 C 0.136 3.864 22 C 0.045 3.955 23 C 0.104 3.896 24 O -0.283 6.283 25 C 0.095 3.905 26 C -0.147 4.147 27 C -0.177 4.177 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.261 0.739 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.051 0.949 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.500 3.614 -16.194 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.048 3.952 4 C -0.222 4.222 5 C -0.111 4.111 6 C -0.160 4.160 7 C -0.059 4.059 8 C -0.033 4.033 9 N -0.233 5.233 10 C -0.082 4.082 11 C 0.029 3.971 12 N -0.332 5.332 13 C -0.383 4.383 14 H 0.101 0.899 15 C -0.176 4.176 16 N -0.556 5.556 17 Si 0.712 3.288 18 H -0.218 1.218 19 H -0.233 1.233 20 H -0.191 1.191 21 C 0.010 3.990 22 C -0.084 4.084 23 C 0.058 3.942 24 O -0.199 6.199 25 C 0.039 3.961 26 C -0.204 4.204 27 C -0.234 4.234 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.070 0.930 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.381 2.808 -15.992 26.058 hybrid contribution 0.032 0.213 -0.659 0.694 sum -20.349 3.021 -16.652 26.467 Atomic orbital electron populations 1.23036 0.78981 1.03758 1.01034 1.86177 1.20748 1.26326 1.88703 1.19597 0.92034 0.84763 0.98792 1.21084 0.99732 0.92092 1.09244 1.20826 0.94418 0.96833 0.99059 1.20875 0.93593 0.97642 1.03927 1.20038 0.96162 0.91365 0.98290 1.21004 0.89738 0.95420 0.97167 1.61888 1.15009 1.44844 1.01552 1.22580 0.99159 0.97139 0.89301 1.20968 0.85768 0.95024 0.95369 1.44381 1.05142 1.79010 1.04662 1.18929 1.01513 1.15362 1.02543 0.89927 1.25292 0.96364 0.98202 0.97763 1.69838 1.04273 1.37495 1.44034 0.86926 0.78067 0.84737 0.79082 1.21763 1.23316 1.19068 1.21344 0.98297 0.94818 0.84525 1.22640 0.87040 0.99477 0.99237 1.17744 0.85445 0.87277 1.03720 1.86367 1.69397 1.34921 1.29181 1.22161 0.96510 0.92740 0.84714 1.21814 1.03344 0.93355 1.01896 1.22474 0.99705 1.00608 1.00597 0.93019 0.88391 0.92742 0.85574 0.85856 0.85758 0.89884 0.94298 0.95389 0.91946 0.95042 0.92129 0.92916 0.94835 0.91320 0.91916 0.95054 0.93148 0.91997 0.91692 0.91340 0.92205 0.92954 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.86 10.26 -34.23 -0.35 -4.21 16 3 C 0.09 1.23 6.58 -39.12 -0.26 0.98 16 4 C -0.20 -2.17 9.04 -39.46 -0.36 -2.53 16 5 C -0.09 -0.95 10.04 -39.58 -0.40 -1.34 16 6 C -0.14 -1.60 9.66 -39.58 -0.38 -1.99 16 7 C -0.06 -0.77 4.62 -104.50 -0.48 -1.26 16 8 C 0.09 1.33 4.74 -4.98 -0.02 1.30 16 9 N -0.51 -8.75 3.23 -235.77 -0.76 -9.52 16 10 C 0.05 0.87 5.46 -3.70 -0.02 0.85 16 11 C 0.15 3.33 6.69 -3.61 -0.02 3.31 16 12 N -0.61 -15.19 2.79 -172.01 -0.48 -15.67 16 13 C -0.26 -7.38 10.06 -15.06 -0.15 -7.53 16 14 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 16 N -0.91 -28.67 13.97 55.49 0.78 -27.89 16 17 Si 0.88 23.12 24.36 -169.99 -4.14 18.98 16 18 H -0.29 -7.30 6.75 56.52 0.38 -6.92 16 19 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 20 H -0.27 -6.95 6.44 56.52 0.36 -6.59 16 21 C 0.14 3.11 4.35 -3.60 -0.02 3.09 16 22 C 0.05 0.84 5.56 -3.70 -0.02 0.82 16 23 C 0.10 1.51 5.46 -39.12 -0.21 1.30 16 24 O -0.28 -4.50 7.91 -34.22 -0.27 -4.77 16 25 C 0.09 1.24 3.36 -26.73 -0.09 1.15 16 26 C -0.15 -1.81 9.55 37.16 0.35 -1.45 16 27 C -0.18 -2.11 8.51 37.16 0.32 -1.79 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.12 1.19 7.98 -52.49 -0.42 0.77 16 34 H 0.08 1.09 5.49 -51.93 -0.29 0.80 16 35 H 0.04 0.52 7.84 -51.93 -0.41 0.12 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.07 7.32 -51.93 -0.38 0.69 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.28 7.95 -51.93 -0.41 0.87 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.03 0.79 6.81 -51.93 -0.35 0.44 16 42 H 0.07 1.69 4.92 -51.93 -0.26 1.43 16 43 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.63 7.83 -51.93 -0.41 0.23 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 50 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 51 H 0.08 1.06 6.71 -51.93 -0.35 0.71 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -33.34 388.80 -8.74 -42.08 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.50 Total: -1.53 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.86 Total: -3.32 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.47 Total: -53.08 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.62 Total: -8.98 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.14 Total: 18.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.34 -8.74 -42.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.158 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds