Wall clock time and date at job start Tue Mar 31 2020 19:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 O 1.42900 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.35997 * 117.00338 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.06837 * 359.97438 * 5 4 3 7 7 C 1.38241 * 119.99356 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.92397 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47460 * 90.00166 * 8 7 6 10 10 C 1.46891 * 111.00538 * 189.99759 * 9 8 7 11 11 C 1.53236 * 109.34490 * 187.25409 * 10 9 8 12 12 N 1.47086 * 108.51747 * 306.17144 * 11 10 9 13 13 C 1.36936 * 120.87786 * 231.18160 * 12 11 10 14 14 H 1.07993 * 120.00304 * 27.13527 * 13 12 11 15 15 C 1.38809 * 119.99955 * 206.85385 * 13 12 11 16 16 N 1.31624 * 119.99882 * 17.16531 * 15 13 12 17 17 Si 1.86805 * 120.00166 * 197.16921 * 15 13 12 18 18 H 1.48494 * 109.47060 * 59.99902 * 17 15 13 19 19 H 1.48503 * 109.46870 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46852 * 299.99893 * 17 15 13 21 21 C 1.47083 * 118.23837 * 51.45711 * 12 11 10 22 22 C 1.46900 * 110.99950 * 314.30370 * 9 8 7 23 23 C 1.38251 * 120.15213 * 0.27839 * 7 6 5 24 24 C 1.38250 * 120.14106 * 359.44541 * 23 7 6 25 25 C 1.38558 * 119.99696 * 0.55230 * 24 23 7 26 26 O 1.35999 * 120.07295 * 179.74456 * 25 24 23 27 27 C 1.42901 * 116.99667 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.46947 * 60.00544 * 1 2 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47063 * 300.00010 * 1 2 3 31 31 H 1.08991 * 109.47576 * 239.99304 * 2 1 3 32 32 H 1.09008 * 109.47007 * 119.99309 * 2 1 3 33 33 H 1.09003 * 109.47313 * 59.99626 * 3 2 1 34 34 H 1.09004 * 109.47174 * 299.99652 * 3 2 1 35 35 H 1.07995 * 120.00330 * 359.95740 * 6 5 4 36 36 H 1.08997 * 109.47436 * 330.00318 * 8 7 6 37 37 H 1.09001 * 109.46989 * 210.00034 * 8 7 6 38 38 H 1.09002 * 109.49046 * 67.29429 * 10 9 8 39 39 H 1.08999 * 109.49556 * 307.21622 * 10 9 8 40 40 H 1.08998 * 109.63090 * 186.46185 * 11 10 9 41 41 H 1.09001 * 109.62654 * 65.87812 * 11 10 9 42 42 H 0.97001 * 119.99713 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.62320 * 68.25155 * 21 12 11 44 44 H 1.08997 * 109.62861 * 188.82856 * 21 12 11 45 45 H 1.09000 * 109.49232 * 292.70484 * 22 9 8 46 46 H 1.08999 * 109.49067 * 52.78237 * 22 9 8 47 47 H 1.08001 * 119.93369 * 179.72726 * 23 7 6 48 48 H 1.07998 * 119.99748 * 180.27712 * 24 23 7 49 49 H 1.08999 * 109.47277 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47414 * 299.99848 * 27 26 25 51 51 H 1.09000 * 109.46997 * 59.99939 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0864 2.6543 0.0001 6 6 3.3331 3.8173 -0.0014 7 6 3.9623 5.0482 -0.0013 8 6 3.1415 6.3121 -0.0024 9 7 2.8737 6.7233 1.3822 10 6 1.8849 7.8087 1.4272 11 6 1.7684 8.3299 2.8635 12 7 1.4842 7.1924 3.7516 13 6 0.4386 7.2346 4.6349 14 1 -0.4235 7.8493 4.4223 15 6 0.4843 6.4827 5.8008 16 7 1.6326 6.0042 6.2307 17 14 -1.0840 6.1497 6.7595 18 1 -2.0451 5.4164 5.8972 19 1 -0.7677 5.3292 7.9563 20 1 -1.6857 7.4382 7.1870 21 6 2.3565 6.0110 3.6701 22 6 2.4463 5.5789 2.1979 23 6 5.3429 5.1224 -0.0055 24 6 6.1003 3.9659 0.0017 25 6 5.4759 2.7290 0.0017 26 8 6.2195 1.5903 0.0036 27 6 7.6403 1.7433 0.0050 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2546 3.7621 -0.0029 36 1 2.1976 6.1319 -0.5169 37 1 3.6905 7.1014 -0.5161 38 1 0.9166 7.4325 1.0971 39 1 2.2037 8.6186 0.7711 40 1 0.9565 9.0545 2.9253 41 1 2.7061 8.8002 3.1595 42 1 1.6645 5.4784 7.0453 43 1 3.3495 6.2628 4.0422 44 1 1.9336 5.2019 4.2655 45 1 1.4702 5.2337 1.8571 46 1 3.1722 4.7717 2.1008 47 1 5.8307 6.0860 -0.0099 48 1 7.1785 4.0266 0.0030 49 1 8.1116 0.7605 0.0070 50 1 7.9475 2.2922 -0.8851 51 1 7.9455 2.2940 0.8948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:19 Heat of formation + Delta-G solvation = -18.527439 kcal Electronic energy + Delta-G solvation = -29882.534444 eV Core-core repulsion = 25976.536305 eV Total energy + Delta-G solvation = -3905.998139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.64043 -38.59505 -38.41720 -36.78455 -34.40097 -33.92497 -31.70788 -30.29694 -30.07820 -29.76696 -27.87044 -26.82988 -26.36064 -24.40881 -22.78213 -22.56411 -22.36888 -21.36846 -20.70862 -19.05955 -18.32771 -17.15585 -16.73357 -16.55665 -16.41763 -15.64490 -15.21834 -14.87402 -14.59814 -14.51086 -14.40393 -14.21055 -14.08623 -13.60951 -13.43259 -13.22160 -13.05869 -12.85886 -12.51412 -12.46602 -12.28531 -12.08489 -11.58280 -11.52458 -11.47256 -11.37247 -11.08869 -11.04073 -10.90425 -10.88471 -10.71020 -10.61958 -10.46534 -10.25519 -10.02678 -9.71116 -9.57277 -8.61585 -8.47227 -7.84716 -7.62768 -6.62948 -5.74978 -3.16389 1.31110 1.49202 3.14947 3.24267 3.39407 3.45288 3.46187 3.70853 4.51013 4.59558 4.68652 4.74751 4.79596 4.88667 4.93502 5.04328 5.06408 5.09431 5.26813 5.29272 5.35139 5.38462 5.41730 5.46630 5.49088 5.49726 5.57268 5.69002 5.78395 5.84793 5.91578 5.95035 5.99268 6.04451 6.15387 6.18818 6.27873 6.33306 6.37317 6.58649 6.68168 6.72205 6.76634 6.96224 7.06444 7.29078 7.59910 7.63657 7.70085 7.74712 7.85433 8.46753 9.24277 9.87925 10.46961 11.33578 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.003581 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.017263 B = 7817.223964 C = 9157.807795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.056 3.944 4 O -0.307 6.307 5 C 0.102 3.898 6 C -0.163 4.163 7 C -0.068 4.068 8 C 0.094 3.906 9 N -0.526 5.526 10 C 0.044 3.956 11 C 0.149 3.851 12 N -0.596 5.596 13 C -0.253 4.253 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.180 3.820 22 C 0.033 3.967 23 C -0.097 4.097 24 C -0.172 4.172 25 C 0.093 3.907 26 O -0.309 6.309 27 C 0.028 3.972 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.254 0.746 43 H 0.025 0.975 44 H 0.086 0.914 45 H 0.020 0.980 46 H 0.066 0.934 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.097 0.903 50 H 0.052 0.948 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -8.275 -16.882 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.019 4.019 4 O -0.221 6.221 5 C 0.057 3.943 6 C -0.182 4.182 7 C -0.069 4.069 8 C -0.034 4.034 9 N -0.251 5.251 10 C -0.085 4.085 11 C 0.022 3.978 12 N -0.319 5.319 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.054 3.946 22 C -0.096 4.096 23 C -0.116 4.116 24 C -0.191 4.191 25 C 0.047 3.953 26 O -0.223 6.223 27 C -0.068 4.068 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.104 0.896 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.115 0.885 50 H 0.071 0.929 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.347 -8.574 -16.503 19.996 hybrid contribution -1.448 -0.154 0.256 1.478 sum 5.899 -8.727 -16.247 19.363 Atomic orbital electron populations 1.21700 0.94283 1.02390 1.02438 1.21449 0.95961 0.94844 1.03564 1.22890 0.78678 0.98814 1.01534 1.86113 1.20861 1.26012 1.89095 1.18104 0.88968 0.85010 1.02238 1.20987 0.99844 0.91103 1.06254 1.19489 0.93915 0.93874 0.99601 1.21071 0.97055 0.93602 0.91647 1.62134 1.45237 1.09966 1.07723 1.22641 0.92449 0.93390 1.00038 1.20965 0.98167 0.90629 0.87996 1.44150 1.33577 1.11988 1.42177 1.19147 0.94556 1.26584 0.98004 0.91755 1.25016 0.96460 1.01974 0.96174 1.70027 1.22870 1.38910 1.22893 0.86389 0.83219 0.78062 0.79226 1.21154 1.21595 1.20893 1.20942 0.93755 0.90767 0.89147 1.23080 0.96910 0.92065 0.97543 1.20709 0.92839 0.97873 1.00138 1.21013 1.00172 0.91037 1.06897 1.18208 0.88144 0.86030 1.02894 1.86153 1.18385 1.28455 1.89272 1.23025 0.79026 1.03550 1.01175 0.92466 0.91836 0.92055 0.91057 0.90761 0.91733 0.92325 0.85126 0.94823 0.90368 0.95482 0.92008 0.92648 0.95689 0.93584 0.95650 0.89556 0.96157 0.91528 0.85380 0.84939 0.88498 0.92928 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.37 16 3 C 0.06 0.67 4.74 37.16 0.18 0.85 16 4 O -0.31 -4.57 9.92 -34.23 -0.34 -4.91 16 5 C 0.10 1.55 6.70 -39.12 -0.26 1.29 16 6 C -0.16 -2.37 6.75 -39.46 -0.27 -2.64 16 7 C -0.07 -0.98 4.13 -104.61 -0.43 -1.42 16 8 C 0.09 1.37 5.42 -4.98 -0.03 1.34 16 9 N -0.53 -9.54 4.77 -235.48 -1.12 -10.66 16 10 C 0.04 0.80 5.58 -3.71 -0.02 0.78 16 11 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 12 N -0.60 -15.40 3.03 -171.73 -0.52 -15.92 16 13 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 14 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 16 N -0.90 -26.66 11.16 55.49 0.62 -26.04 16 17 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.18 4.50 5.45 -3.37 -0.02 4.48 16 22 C 0.03 0.67 4.79 -3.47 -0.02 0.65 16 23 C -0.10 -1.29 9.69 -39.57 -0.38 -1.67 16 24 C -0.17 -2.18 9.04 -39.46 -0.36 -2.54 16 25 C 0.09 1.34 6.70 -39.12 -0.26 1.07 16 26 O -0.31 -4.24 10.28 -34.24 -0.35 -4.59 16 27 C 0.03 0.24 9.81 101.05 0.99 1.24 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 35 H 0.13 1.82 6.30 -52.49 -0.33 1.49 16 36 H 0.03 0.48 8.02 -51.93 -0.42 0.06 16 37 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 40 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.32 5.54 -51.93 -0.29 1.03 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 48 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 51 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -32.21 399.08 -10.39 -42.60 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.73 Total: -0.47 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.93 Total: -2.89 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -1.02 Total: -52.62 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.69 Total: -9.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.21 -10.39 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.073 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds