Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 O 1.42900 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.35997 * 117.00338 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.06837 * 359.97438 * 5 4 3 7 7 C 1.38241 * 119.99356 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.92397 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47460 * 90.00166 * 8 7 6 10 10 C 1.46891 * 111.00538 * 189.99759 * 9 8 7 11 11 C 1.53236 * 109.34490 * 187.25409 * 10 9 8 12 12 N 1.47086 * 108.51747 * 306.17144 * 11 10 9 13 13 C 1.36936 * 120.87786 * 231.18160 * 12 11 10 14 14 H 1.07993 * 120.00304 * 27.13527 * 13 12 11 15 15 C 1.38809 * 119.99955 * 206.85385 * 13 12 11 16 16 N 1.31624 * 119.99882 * 17.16531 * 15 13 12 17 17 Si 1.86805 * 120.00166 * 197.16921 * 15 13 12 18 18 H 1.48494 * 109.47060 * 59.99902 * 17 15 13 19 19 H 1.48503 * 109.46870 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46852 * 299.99893 * 17 15 13 21 21 C 1.47083 * 118.23837 * 51.45711 * 12 11 10 22 22 C 1.46900 * 110.99950 * 314.30370 * 9 8 7 23 23 C 1.38251 * 120.15213 * 0.27839 * 7 6 5 24 24 C 1.38250 * 120.14106 * 359.44541 * 23 7 6 25 25 C 1.38558 * 119.99696 * 0.55230 * 24 23 7 26 26 O 1.35999 * 120.07295 * 179.74456 * 25 24 23 27 27 C 1.42901 * 116.99667 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.46947 * 60.00544 * 1 2 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47063 * 300.00010 * 1 2 3 31 31 H 1.08991 * 109.47576 * 239.99304 * 2 1 3 32 32 H 1.09008 * 109.47007 * 119.99309 * 2 1 3 33 33 H 1.09003 * 109.47313 * 59.99626 * 3 2 1 34 34 H 1.09004 * 109.47174 * 299.99652 * 3 2 1 35 35 H 1.07995 * 120.00330 * 359.95740 * 6 5 4 36 36 H 1.08997 * 109.47436 * 330.00318 * 8 7 6 37 37 H 1.09001 * 109.46989 * 210.00034 * 8 7 6 38 38 H 1.09002 * 109.49046 * 67.29429 * 10 9 8 39 39 H 1.08999 * 109.49556 * 307.21622 * 10 9 8 40 40 H 1.08998 * 109.63090 * 186.46185 * 11 10 9 41 41 H 1.09001 * 109.62654 * 65.87812 * 11 10 9 42 42 H 0.97001 * 119.99713 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.62320 * 68.25155 * 21 12 11 44 44 H 1.08997 * 109.62861 * 188.82856 * 21 12 11 45 45 H 1.09000 * 109.49232 * 292.70484 * 22 9 8 46 46 H 1.08999 * 109.49067 * 52.78237 * 22 9 8 47 47 H 1.08001 * 119.93369 * 179.72726 * 23 7 6 48 48 H 1.07998 * 119.99748 * 180.27712 * 24 23 7 49 49 H 1.08999 * 109.47277 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47414 * 299.99848 * 27 26 25 51 51 H 1.09000 * 109.46997 * 59.99939 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0864 2.6543 0.0001 6 6 3.3331 3.8173 -0.0014 7 6 3.9623 5.0482 -0.0013 8 6 3.1415 6.3121 -0.0024 9 7 2.8737 6.7233 1.3822 10 6 1.8849 7.8087 1.4272 11 6 1.7684 8.3299 2.8635 12 7 1.4842 7.1924 3.7516 13 6 0.4386 7.2346 4.6349 14 1 -0.4235 7.8493 4.4223 15 6 0.4843 6.4827 5.8008 16 7 1.6326 6.0042 6.2307 17 14 -1.0840 6.1497 6.7595 18 1 -2.0451 5.4164 5.8972 19 1 -0.7677 5.3292 7.9563 20 1 -1.6857 7.4382 7.1870 21 6 2.3565 6.0110 3.6701 22 6 2.4463 5.5789 2.1979 23 6 5.3429 5.1224 -0.0055 24 6 6.1003 3.9659 0.0017 25 6 5.4759 2.7290 0.0017 26 8 6.2195 1.5903 0.0036 27 6 7.6403 1.7433 0.0050 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2546 3.7621 -0.0029 36 1 2.1976 6.1319 -0.5169 37 1 3.6905 7.1014 -0.5161 38 1 0.9166 7.4325 1.0971 39 1 2.2037 8.6186 0.7711 40 1 0.9565 9.0545 2.9253 41 1 2.7061 8.8002 3.1595 42 1 1.6645 5.4784 7.0453 43 1 3.3495 6.2628 4.0422 44 1 1.9336 5.2019 4.2655 45 1 1.4702 5.2337 1.8571 46 1 3.1722 4.7717 2.1008 47 1 5.8307 6.0860 -0.0099 48 1 7.1785 4.0266 0.0030 49 1 8.1116 0.7605 0.0070 50 1 7.9475 2.2922 -0.8851 51 1 7.9455 2.2940 0.8948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = -37.788442 kcal Electronic energy + Delta-G solvation = -29883.369663 eV Core-core repulsion = 25976.536305 eV Total energy + Delta-G solvation = -3906.833358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67839 -39.87012 -39.54901 -38.06298 -36.03512 -34.84435 -33.46402 -31.76205 -31.44021 -31.10201 -29.05069 -27.90398 -27.50068 -25.95217 -24.33637 -24.07481 -23.53465 -22.44535 -21.74957 -20.80156 -19.36314 -18.71382 -18.11229 -17.60375 -17.41866 -17.02617 -16.50334 -16.27176 -16.04844 -15.65547 -15.59331 -15.38175 -15.31135 -15.03297 -14.88839 -14.79735 -14.54432 -14.19354 -13.58193 -13.45074 -13.24772 -13.11304 -12.99159 -12.91774 -12.73740 -12.59202 -12.47670 -12.31745 -12.29306 -12.08400 -11.98556 -11.95960 -11.88058 -11.80417 -11.59162 -11.47147 -11.40746 -10.58859 -9.68441 -9.24443 -8.78008 -8.65941 -7.88059 -5.33298 0.26166 0.42654 1.45115 1.47684 1.54682 2.17894 2.36877 2.49938 2.61784 3.19789 3.28487 3.67001 3.69931 3.81397 3.88865 3.93964 4.03718 4.13568 4.23050 4.30106 4.35327 4.39635 4.42917 4.43757 4.49099 4.50074 4.51577 4.53203 4.63970 4.67345 4.71655 4.75483 4.79048 4.87367 4.91348 5.03720 5.05752 5.13320 5.14063 5.19815 5.28552 5.30458 5.36162 5.59767 5.63078 5.65358 5.71099 6.10754 6.18130 6.26471 6.36666 6.61146 7.11992 7.83241 8.38011 9.18497 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.003581 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.017263 B = 7817.223964 C = 9157.807795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.053 3.947 4 O -0.324 6.324 5 C 0.079 3.921 6 C -0.168 4.168 7 C -0.084 4.084 8 C 0.099 3.901 9 N -0.534 5.534 10 C 0.055 3.945 11 C 0.143 3.857 12 N -0.614 5.614 13 C -0.267 4.267 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.273 1.273 21 C 0.189 3.811 22 C 0.058 3.942 23 C -0.097 4.097 24 C -0.169 4.169 25 C 0.081 3.919 26 O -0.332 6.332 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.250 0.750 43 H -0.006 1.006 44 H 0.052 0.948 45 H 0.014 0.986 46 H 0.070 0.930 47 H 0.148 0.852 48 H 0.161 0.839 49 H 0.116 0.884 50 H 0.070 0.930 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -7.776 -18.773 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.022 4.022 4 O -0.238 6.238 5 C 0.034 3.966 6 C -0.187 4.187 7 C -0.085 4.085 8 C -0.027 4.027 9 N -0.259 5.259 10 C -0.074 4.074 11 C 0.018 3.982 12 N -0.338 5.338 13 C -0.397 4.397 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.795 3.205 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.199 1.199 21 C 0.063 3.937 22 C -0.072 4.072 23 C -0.116 4.116 24 C -0.187 4.187 25 C 0.035 3.965 26 O -0.247 6.247 27 C -0.076 4.076 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.148 0.852 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.165 0.835 48 H 0.179 0.821 49 H 0.134 0.866 50 H 0.088 0.912 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.499 -8.053 -18.432 21.467 hybrid contribution -1.387 -0.296 0.811 1.633 sum 6.113 -8.349 -17.621 20.435 Atomic orbital electron populations 1.21692 0.92997 1.03346 1.02423 1.21463 0.96962 0.93496 1.03524 1.23047 0.77620 1.00151 1.01390 1.86089 1.22146 1.26340 1.89273 1.18408 0.89772 0.85221 1.03229 1.21030 0.99886 0.91324 1.06473 1.19584 0.94606 0.93603 1.00660 1.21124 0.97822 0.94528 0.89272 1.62060 1.44904 1.09030 1.09891 1.22508 0.92638 0.94372 0.97909 1.21149 0.97901 0.89723 0.89438 1.44427 1.33319 1.13496 1.42588 1.19523 0.95382 1.26392 0.98358 0.91315 1.25807 0.99327 1.02113 0.97350 1.70199 1.24967 1.39828 1.23249 0.85340 0.79536 0.78022 0.77569 1.20435 1.22003 1.19864 1.20654 0.91576 0.89733 0.91742 1.22624 0.96773 0.92945 0.94829 1.20996 0.92505 0.98953 0.99149 1.21325 1.01630 0.90125 1.05634 1.18498 0.88246 0.86971 1.02753 1.86123 1.20688 1.28652 1.89199 1.23344 0.76692 1.05313 1.02291 0.91625 0.90396 0.92903 0.90337 0.91521 0.93028 0.91240 0.85227 0.94071 0.87695 0.95758 0.88096 0.91919 0.96557 0.94129 0.98771 0.93013 0.96794 0.91156 0.83458 0.82110 0.86580 0.91173 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.12 -2.32 6.30 30.60 0.19 -2.13 16 3 C 0.05 1.29 4.74 71.98 0.34 1.63 16 4 O -0.32 -9.85 9.92 -79.65 -0.79 -10.64 16 5 C 0.08 2.40 6.70 22.57 0.15 2.55 16 6 C -0.17 -4.84 6.75 22.35 0.15 -4.69 16 7 C -0.08 -2.29 4.13 -19.86 -0.08 -2.37 16 8 C 0.10 2.63 5.42 85.56 0.46 3.10 16 9 N -0.53 -18.46 4.77 -898.92 -4.29 -22.75 16 10 C 0.05 1.85 5.58 86.38 0.48 2.33 16 11 C 0.14 6.10 6.69 86.35 0.58 6.68 16 12 N -0.61 -32.23 3.03 -697.25 -2.11 -34.35 16 13 C -0.27 -15.07 9.63 84.03 0.81 -14.26 16 14 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 15 C -0.05 -2.90 4.93 84.86 0.42 -2.48 16 16 N -0.94 -57.16 11.16 21.65 0.24 -56.92 16 17 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.19 9.78 5.45 86.50 0.47 10.25 16 22 C 0.06 2.36 4.79 86.54 0.41 2.77 16 23 C -0.10 -2.37 9.69 22.28 0.22 -2.15 16 24 C -0.17 -3.94 9.04 22.35 0.20 -3.74 16 25 C 0.08 2.28 6.70 22.57 0.15 2.43 16 26 O -0.33 -8.87 10.28 -79.67 -0.82 -9.69 16 27 C 0.02 0.28 9.81 113.37 1.11 1.39 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.05 1.36 7.67 -2.39 -0.02 1.35 16 34 H 0.07 1.50 7.66 -2.39 -0.02 1.49 16 35 H 0.13 3.63 6.30 -2.91 -0.02 3.61 16 36 H 0.04 1.06 8.02 -2.39 -0.02 1.04 16 37 H 0.10 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 2.68 8.11 -2.39 -0.02 2.66 16 40 H 0.06 2.52 7.95 -2.39 -0.02 2.51 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.05 3.00 6.12 -2.39 -0.01 2.99 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 2.82 5.54 -2.39 -0.01 2.81 16 47 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 48 H 0.16 2.70 6.30 -2.91 -0.02 2.68 16 49 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 51 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 Total: -1.00 -71.36 399.08 1.94 -69.42 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.89 Total: 17.64 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 6.79 Total: -0.37 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -6.16 Total: -114.01 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -1.61 Total: -20.33 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.36 1.94 -69.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.634 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds