Wall clock time and date at job start Tue Mar 31 2020 19:13:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47139 * 2 1
4 4 O 1.42898 * 109.46982 * 179.97438 * 3 2 1
5 5 C 1.35900 * 116.99856 * 179.97438 * 4 3 2
6 6 C 1.38755 * 120.05595 * 0.02562 * 5 4 3
7 7 C 1.38116 * 119.94376 * 179.97438 * 6 5 4
8 8 C 1.38298 * 120.05410 * 359.74269 * 7 6 5
9 9 C 1.38241 * 120.10963 * 0.51523 * 8 7 6
10 10 C 1.50704 * 119.96821 * 179.76613 * 9 8 7
11 11 N 1.46499 * 109.46968 * 269.71730 * 10 9 8
12 12 C 1.34774 * 119.99589 * 179.97438 * 11 10 9
13 13 O 1.21279 * 120.00597 * 0.02562 * 12 11 10
14 14 C 1.50705 * 119.99613 * 180.02562 * 12 11 10
15 15 N 1.46908 * 109.47043 * 180.02562 * 14 12 11
16 16 C 1.46897 * 110.99792 * 66.04498 * 15 14 12
17 17 C 1.46891 * 110.99774 * 190.00121 * 15 14 12
18 18 H 1.09003 * 109.47167 * 299.99794 * 17 15 14
19 19 C 1.53003 * 109.47499 * 60.00101 * 17 15 14
20 20 C 1.50702 * 109.46941 * 179.97438 * 17 15 14
21 21 H 1.07999 * 120.00272 * 354.29926 * 20 17 15
22 22 C 1.37880 * 120.00047 * 174.29657 * 20 17 15
23 23 N 1.31516 * 119.99821 * 157.45421 * 22 20 17
24 24 Si 1.86800 * 120.00249 * 337.73257 * 22 20 17
25 25 H 1.48496 * 109.46923 * 269.72580 * 24 22 20
26 26 H 1.48508 * 109.46832 * 29.72189 * 24 22 20
27 27 H 1.48493 * 109.47297 * 149.72128 * 24 22 20
28 28 C 1.38162 * 120.05819 * 359.48542 * 9 8 7
29 29 H 1.09004 * 109.47332 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47265 * 299.99808 * 1 2 3
31 31 H 1.08997 * 109.47288 * 59.99914 * 1 2 3
32 32 H 1.09001 * 109.46638 * 239.99849 * 2 1 3
33 33 H 1.09002 * 109.46599 * 120.00000 * 2 1 3
34 34 H 1.08997 * 109.46886 * 59.99959 * 3 2 1
35 35 H 1.08997 * 109.47101 * 300.00201 * 3 2 1
36 36 H 1.07994 * 120.02730 * 359.95394 * 6 5 4
37 37 H 1.08000 * 119.97372 * 180.02562 * 7 6 5
38 38 H 1.07998 * 119.94354 * 180.27621 * 8 7 6
39 39 H 1.09003 * 109.46813 * 149.71937 * 10 9 8
40 40 H 1.08996 * 109.47310 * 29.72097 * 10 9 8
41 41 H 0.96992 * 119.99859 * 0.02562 * 11 10 9
42 42 H 1.08996 * 109.46840 * 60.00513 * 14 12 11
43 43 H 1.08996 * 109.47340 * 300.00380 * 14 12 11
44 44 H 1.09000 * 109.47191 * 183.95412 * 16 15 14
45 45 H 1.08998 * 109.47566 * 303.95722 * 16 15 14
46 46 H 1.09005 * 109.46960 * 63.95580 * 16 15 14
47 47 H 1.09002 * 109.46507 * 51.60315 * 19 17 15
48 48 H 1.08996 * 109.47152 * 171.60311 * 19 17 15
49 49 H 1.08992 * 109.46953 * 291.60637 * 19 17 15
50 50 H 0.96997 * 120.00425 * 355.23214 * 23 22 20
51 51 H 1.07995 * 120.03026 * 180.23782 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4424 0.0006
5 6 4.0860 2.6533 0.0001
6 6 3.3314 3.8177 -0.0003
7 6 3.9609 5.0471 -0.0003
8 6 5.3420 5.1181 0.0056
9 6 6.0960 3.9594 0.0008
10 6 7.6009 4.0405 0.0019
11 7 8.0895 4.0663 -1.3790
12 6 9.4128 4.1380 -1.6242
13 8 10.1991 4.1808 -0.7018
14 6 9.9155 4.1651 -3.0447
15 7 11.3824 4.2441 -3.0436
16 6 11.9750 3.0208 -2.4864
17 6 11.8963 4.5103 -4.3937
18 1 11.5900 3.7070 -5.0639
19 6 11.3338 5.8398 -4.9006
20 6 13.4009 4.5848 -4.3529
21 1 13.9183 4.5403 -3.4059
22 6 14.1170 4.7099 -5.5245
23 7 15.3333 5.2094 -5.5015
24 14 13.3566 4.1769 -7.1453
25 1 13.6799 2.7498 -7.3981
26 1 11.8827 4.3466 -7.0801
27 1 13.9026 5.0107 -8.2461
28 6 5.4712 2.7272 0.0007
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6767 1.9563 -0.8899
36 1 2.2529 3.7628 -0.0011
37 1 3.3740 5.9538 -0.0002
38 1 5.8323 6.0804 0.0102
39 1 8.0111 3.1715 0.5164
40 1 7.9154 4.9489 0.5157
41 1 7.4607 4.0325 -2.1166
42 1 9.5049 5.0341 -3.5588
43 1 9.6012 3.2568 -3.5587
44 1 13.0578 3.1337 -2.4322
45 1 11.5773 2.8472 -1.4865
46 1 11.7296 2.1738 -3.1271
47 1 11.5116 6.6166 -4.1568
48 1 11.8272 6.1108 -5.8339
49 1 10.2622 5.7392 -5.0719
50 1 15.7008 5.5537 -4.6725
51 1 6.0606 1.8223 0.0007
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000161735672.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:06
Heat of formation + Delta-G solvation = -46.151812 kcal
Electronic energy + Delta-G solvation = -27904.151387 eV
Core-core repulsion = 23996.955366 eV
Total energy + Delta-G solvation = -3907.196021 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.64289 -39.56521 -38.20517 -36.63322 -34.83208 -34.33493 -32.67540 -31.69540
-30.45765 -29.93664 -28.29970 -27.12514 -25.96563 -24.25702 -23.50466 -22.95930
-22.35210 -21.16924 -20.38209 -19.21798 -18.30170 -17.48544 -16.78018 -16.65776
-16.59113 -16.36222 -15.91609 -15.44344 -14.79487 -14.65607 -14.42425 -14.25314
-13.93896 -13.85159 -13.48443 -13.44213 -13.04012 -12.84170 -12.79973 -12.66670
-12.43187 -12.25281 -11.92350 -11.82982 -11.76483 -11.68657 -11.40728 -11.17323
-11.12492 -11.11384 -10.86005 -10.50118 -10.35548 -10.20908 -9.77137 -9.55672
-9.14227 -8.99311 -8.82751 -8.57762 -8.18746 -7.26827 -6.42607 -3.98085
0.82726 1.07049 2.69768 2.95557 3.12679 3.42045 3.43823 3.59411
3.60842 4.23809 4.31006 4.34758 4.47414 4.53079 4.61800 4.66250
4.78018 4.84690 4.92622 4.94465 5.00518 5.07240 5.12696 5.15663
5.27625 5.40362 5.40717 5.49277 5.58012 5.64460 5.67046 5.70706
5.74454 5.89802 6.03795 6.22760 6.23215 6.34574 6.35057 6.43739
6.49237 6.60242 6.72690 6.91872 7.01356 7.03319 7.34833 7.56686
7.80628 8.06925 8.35909 8.48573 8.54116 9.05604 9.66800 10.96419
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.018917 B = 0.001864 C = 0.001799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.803739 B =15019.824214 C =15558.221623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.125 4.125
3 C 0.059 3.941
4 O -0.316 6.316
5 C 0.128 3.872
6 C -0.204 4.204
7 C -0.081 4.081
8 C -0.138 4.138
9 C -0.064 4.064
10 C 0.163 3.837
11 N -0.737 5.737
12 C 0.515 3.485
13 O -0.517 6.517
14 C 0.030 3.970
15 N -0.511 5.511
16 C 0.036 3.964
17 C 0.189 3.811
18 H -0.007 1.007
19 C -0.137 4.137
20 C -0.594 4.594
21 H 0.066 0.934
22 C 0.035 3.965
23 N -0.901 5.901
24 Si 1.038 2.962
25 H -0.287 1.287
26 H -0.277 1.277
27 H -0.286 1.286
28 C -0.134 4.134
29 H 0.065 0.935
30 H 0.057 0.943
31 H 0.058 0.942
32 H 0.074 0.926
33 H 0.074 0.926
34 H 0.061 0.939
35 H 0.062 0.938
36 H 0.127 0.873
37 H 0.127 0.873
38 H 0.128 0.872
39 H 0.075 0.925
40 H 0.078 0.922
41 H 0.399 0.601
42 H 0.101 0.899
43 H 0.051 0.949
44 H 0.077 0.923
45 H 0.063 0.937
46 H 0.006 0.994
47 H 0.053 0.947
48 H 0.050 0.950
49 H 0.019 0.981
50 H 0.270 0.730
51 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.633 -5.949 10.912 34.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.162 4.162
3 C -0.016 4.016
4 O -0.230 6.230
5 C 0.083 3.917
6 C -0.223 4.223
7 C -0.099 4.099
8 C -0.157 4.157
9 C -0.065 4.065
10 C 0.039 3.961
11 N -0.392 5.392
12 C 0.302 3.698
13 O -0.390 6.390
14 C -0.102 4.102
15 N -0.236 5.236
16 C -0.112 4.112
17 C 0.082 3.918
18 H 0.010 0.990
19 C -0.195 4.195
20 C -0.632 4.632
21 H 0.084 0.916
22 C -0.171 4.171
23 N -0.534 5.534
24 Si 0.867 3.133
25 H -0.214 1.214
26 H -0.203 1.203
27 H -0.212 1.212
28 C -0.153 4.153
29 H 0.084 0.916
30 H 0.076 0.924
31 H 0.077 0.923
32 H 0.093 0.907
33 H 0.093 0.907
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.145 0.855
37 H 0.145 0.855
38 H 0.146 0.854
39 H 0.093 0.907
40 H 0.096 0.904
41 H 0.233 0.767
42 H 0.119 0.881
43 H 0.069 0.931
44 H 0.096 0.904
45 H 0.081 0.919
46 H 0.024 0.976
47 H 0.072 0.928
48 H 0.069 0.931
49 H 0.038 0.962
50 H 0.080 0.920
51 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -31.461 -5.880 10.277 33.615
hybrid contribution -1.201 -0.321 0.743 1.448
sum -32.662 -6.201 11.020 35.025
Atomic orbital electron populations
1.21694 0.94162 1.02671 1.02213 1.21496 0.96086 0.94750 1.03894
1.22888 0.78375 0.98971 1.01416 1.86068 1.21347 1.26942 1.88602
1.18945 0.92155 0.84163 0.96483 1.21281 1.00038 0.92468 1.08552
1.20952 0.94530 0.97061 0.97384 1.21061 0.93719 0.98221 1.02669
1.19712 0.95177 0.92479 0.99088 1.20116 0.88131 1.03286 0.84545
1.46100 1.07659 1.77659 1.07750 1.20980 0.81229 0.75258 0.92357
1.90664 1.54834 1.47301 1.46247 1.22049 0.93634 1.02227 0.92244
1.61774 1.00374 1.36173 1.25272 1.22326 1.01876 0.88907 0.98063
1.19701 0.96581 0.92086 0.83457 0.98982 1.22144 0.96478 1.00207
1.00668 1.21916 0.89443 1.56219 0.95609 0.91568 1.25633 0.95536
0.93803 1.02127 1.70792 1.17703 1.34682 1.30236 0.84104 0.75905
0.77002 0.76338 1.21366 1.20309 1.21190 1.20368 0.91350 0.98331
1.05237 0.91613 0.92360 0.92328 0.90698 0.90745 0.92033 0.91979
0.85547 0.85538 0.85439 0.90651 0.90417 0.76719 0.88117 0.93131
0.90399 0.91872 0.97593 0.92800 0.93085 0.96218 0.91962 0.84939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16
2 C -0.12 -0.61 6.30 -26.73 -0.17 -0.78 16
3 C 0.06 0.35 4.74 37.16 0.18 0.53 16
4 O -0.32 -2.89 10.14 -19.43 -0.20 -3.08 16
5 C 0.13 1.19 6.69 -39.22 -0.26 0.92 16
6 C -0.20 -1.59 9.04 -39.44 -0.36 -1.95 16
7 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16
8 C -0.14 -1.16 9.70 -39.56 -0.38 -1.54 16
9 C -0.06 -0.60 5.25 -104.65 -0.55 -1.15 16
10 C 0.16 1.77 5.80 -5.19 -0.03 1.74 16
11 N -0.74 -8.86 5.55 -61.47 -0.34 -9.21 16
12 C 0.52 8.48 7.52 -10.98 -0.08 8.40 16
13 O -0.52 -10.54 14.33 5.56 0.08 -10.46 16
14 C 0.03 0.52 5.26 -4.97 -0.03 0.50 16
15 N -0.51 -11.40 4.36 -237.73 -1.04 -12.44 16
16 C 0.04 0.79 8.88 60.06 0.53 1.33 16
17 C 0.19 4.59 1.61 -68.87 -0.11 4.48 16
18 H -0.01 -0.18 6.50 -51.93 -0.34 -0.51 16
19 C -0.14 -3.04 8.17 37.16 0.30 -2.73 16
20 C -0.59 -16.89 8.01 -34.44 -0.28 -17.16 16
21 H 0.07 2.07 6.88 -52.49 -0.36 1.71 16
22 C 0.03 1.01 5.19 -17.82 -0.09 0.91 16
23 N -0.90 -27.75 13.70 55.43 0.76 -26.99 16
24 Si 1.04 25.11 26.39 -169.99 -4.49 20.62 16
25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
26 H -0.28 -6.17 6.02 56.52 0.34 -5.83 16
27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
28 C -0.13 -1.29 9.64 -39.43 -0.38 -1.67 16
29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16
30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16
32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16
35 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16
36 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16
37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
39 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16
40 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16
41 H 0.40 3.88 8.46 -40.82 -0.35 3.54 16
42 H 0.10 1.61 6.01 -51.93 -0.31 1.29 16
43 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16
44 H 0.08 1.86 6.34 -51.93 -0.33 1.54 16
45 H 0.06 1.33 5.83 -51.93 -0.30 1.02 16
46 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16
47 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16
48 H 0.05 1.16 5.84 -51.93 -0.30 0.86 16
49 H 0.02 0.36 6.66 -51.93 -0.35 0.01 16
50 H 0.27 8.36 8.73 -40.82 -0.36 8.00 16
51 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
LS Contribution 404.78 15.07 6.10 6.10
Total: -1.00 -33.85 404.78 -9.32 -43.17
By element:
Atomic # 1 Polarization: 10.05 SS G_CDS: -8.47 Total: 1.59 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -1.73 Total: -9.31 kcal
Atomic # 7 Polarization: -48.01 SS G_CDS: -0.62 Total: -48.63 kcal
Atomic # 8 Polarization: -13.43 SS G_CDS: -0.12 Total: -13.55 kcal
Atomic # 14 Polarization: 25.11 SS G_CDS: -4.49 Total: 20.62 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.85 -9.32 -43.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000161735672.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.980 kcal
(2) G-P(sol) polarization free energy of solvation -33.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds