Wall clock time and date at job start Tue Mar 31 2020 19:13:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47139 * 2 1
4 4 O 1.42898 * 109.46982 * 179.97438 * 3 2 1
5 5 C 1.35900 * 116.99856 * 179.97438 * 4 3 2
6 6 C 1.38755 * 120.05595 * 0.02562 * 5 4 3
7 7 C 1.38116 * 119.94376 * 179.97438 * 6 5 4
8 8 C 1.38298 * 120.05410 * 359.74269 * 7 6 5
9 9 C 1.38241 * 120.10963 * 0.51523 * 8 7 6
10 10 C 1.50704 * 119.96821 * 179.76613 * 9 8 7
11 11 N 1.46499 * 109.46968 * 269.71730 * 10 9 8
12 12 C 1.34774 * 119.99589 * 179.97438 * 11 10 9
13 13 O 1.21279 * 120.00597 * 0.02562 * 12 11 10
14 14 C 1.50705 * 119.99613 * 180.02562 * 12 11 10
15 15 N 1.46908 * 109.47043 * 180.02562 * 14 12 11
16 16 C 1.46897 * 110.99792 * 66.04498 * 15 14 12
17 17 C 1.46891 * 110.99774 * 190.00121 * 15 14 12
18 18 H 1.09003 * 109.47167 * 299.99794 * 17 15 14
19 19 C 1.53003 * 109.47499 * 60.00101 * 17 15 14
20 20 C 1.50702 * 109.46941 * 179.97438 * 17 15 14
21 21 H 1.07999 * 120.00272 * 354.29926 * 20 17 15
22 22 C 1.37880 * 120.00047 * 174.29657 * 20 17 15
23 23 N 1.31516 * 119.99821 * 157.45421 * 22 20 17
24 24 Si 1.86800 * 120.00249 * 337.73257 * 22 20 17
25 25 H 1.48496 * 109.46923 * 269.72580 * 24 22 20
26 26 H 1.48508 * 109.46832 * 29.72189 * 24 22 20
27 27 H 1.48493 * 109.47297 * 149.72128 * 24 22 20
28 28 C 1.38162 * 120.05819 * 359.48542 * 9 8 7
29 29 H 1.09004 * 109.47332 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47265 * 299.99808 * 1 2 3
31 31 H 1.08997 * 109.47288 * 59.99914 * 1 2 3
32 32 H 1.09001 * 109.46638 * 239.99849 * 2 1 3
33 33 H 1.09002 * 109.46599 * 120.00000 * 2 1 3
34 34 H 1.08997 * 109.46886 * 59.99959 * 3 2 1
35 35 H 1.08997 * 109.47101 * 300.00201 * 3 2 1
36 36 H 1.07994 * 120.02730 * 359.95394 * 6 5 4
37 37 H 1.08000 * 119.97372 * 180.02562 * 7 6 5
38 38 H 1.07998 * 119.94354 * 180.27621 * 8 7 6
39 39 H 1.09003 * 109.46813 * 149.71937 * 10 9 8
40 40 H 1.08996 * 109.47310 * 29.72097 * 10 9 8
41 41 H 0.96992 * 119.99859 * 0.02562 * 11 10 9
42 42 H 1.08996 * 109.46840 * 60.00513 * 14 12 11
43 43 H 1.08996 * 109.47340 * 300.00380 * 14 12 11
44 44 H 1.09000 * 109.47191 * 183.95412 * 16 15 14
45 45 H 1.08998 * 109.47566 * 303.95722 * 16 15 14
46 46 H 1.09005 * 109.46960 * 63.95580 * 16 15 14
47 47 H 1.09002 * 109.46507 * 51.60315 * 19 17 15
48 48 H 1.08996 * 109.47152 * 171.60311 * 19 17 15
49 49 H 1.08992 * 109.46953 * 291.60637 * 19 17 15
50 50 H 0.96997 * 120.00425 * 355.23214 * 23 22 20
51 51 H 1.07995 * 120.03026 * 180.23782 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4424 0.0006
5 6 4.0860 2.6533 0.0001
6 6 3.3314 3.8177 -0.0003
7 6 3.9609 5.0471 -0.0003
8 6 5.3420 5.1181 0.0056
9 6 6.0960 3.9594 0.0008
10 6 7.6009 4.0405 0.0019
11 7 8.0895 4.0663 -1.3790
12 6 9.4128 4.1380 -1.6242
13 8 10.1991 4.1808 -0.7018
14 6 9.9155 4.1651 -3.0447
15 7 11.3824 4.2441 -3.0436
16 6 11.9750 3.0208 -2.4864
17 6 11.8963 4.5103 -4.3937
18 1 11.5900 3.7070 -5.0639
19 6 11.3338 5.8398 -4.9006
20 6 13.4009 4.5848 -4.3529
21 1 13.9183 4.5403 -3.4059
22 6 14.1170 4.7099 -5.5245
23 7 15.3333 5.2094 -5.5015
24 14 13.3566 4.1769 -7.1453
25 1 13.6799 2.7498 -7.3981
26 1 11.8827 4.3466 -7.0801
27 1 13.9026 5.0107 -8.2461
28 6 5.4712 2.7272 0.0007
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6767 1.9563 -0.8899
36 1 2.2529 3.7628 -0.0011
37 1 3.3740 5.9538 -0.0002
38 1 5.8323 6.0804 0.0102
39 1 8.0111 3.1715 0.5164
40 1 7.9154 4.9489 0.5157
41 1 7.4607 4.0325 -2.1166
42 1 9.5049 5.0341 -3.5588
43 1 9.6012 3.2568 -3.5587
44 1 13.0578 3.1337 -2.4322
45 1 11.5773 2.8472 -1.4865
46 1 11.7296 2.1738 -3.1271
47 1 11.5116 6.6166 -4.1568
48 1 11.8272 6.1108 -5.8339
49 1 10.2622 5.7392 -5.0719
50 1 15.7008 5.5537 -4.6725
51 1 6.0606 1.8223 0.0007
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000161735672.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:05
Heat of formation + Delta-G solvation = -69.561493 kcal
Electronic energy + Delta-G solvation = -27905.166507 eV
Core-core repulsion = 23996.955366 eV
Total energy + Delta-G solvation = -3908.211141 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.32901 -40.78962 -38.96752 -38.24183 -35.84270 -34.79975 -34.76990 -32.55622
-31.80903 -31.07876 -29.66200 -27.67424 -27.02881 -26.14080 -25.09430 -23.60165
-22.87339 -21.79360 -21.75118 -20.94587 -19.59661 -18.99167 -17.94575 -17.27305
-17.23767 -17.18564 -16.98302 -16.78366 -16.10736 -15.61952 -15.53923 -15.24090
-15.10773 -15.07369 -14.73040 -14.37211 -14.13721 -14.00893 -13.83180 -13.71569
-13.43280 -13.31593 -13.11421 -13.03077 -12.86731 -12.70989 -12.50293 -12.28183
-12.20750 -12.19164 -12.14900 -12.02970 -11.70404 -11.55693 -11.54247 -10.94811
-10.84324 -10.39078 -10.11414 -9.93016 -9.21161 -8.97721 -8.72849 -6.28373
0.16606 0.43658 1.49070 1.54485 1.66711 1.73264 2.10552 2.20822
2.53283 2.81166 3.05989 3.32839 3.58515 3.80627 3.92326 3.93632
3.98947 4.06470 4.18465 4.28218 4.28933 4.33185 4.39893 4.41819
4.49493 4.54067 4.54338 4.56439 4.69260 4.74597 4.77494 4.80493
4.81298 4.92045 5.01039 5.11611 5.13149 5.16611 5.17351 5.27387
5.34342 5.41571 5.43382 5.53752 5.56823 5.75451 5.87050 6.09452
6.22023 6.41993 6.43596 6.65744 6.77757 7.30582 7.46891 8.64716
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.018917 B = 0.001864 C = 0.001799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.803739 B =15019.824214 C =15558.221623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.124 4.124
3 C 0.053 3.947
4 O -0.335 6.335
5 C 0.115 3.885
6 C -0.201 4.201
7 C -0.079 4.079
8 C -0.142 4.142
9 C -0.067 4.067
10 C 0.166 3.834
11 N -0.714 5.714
12 C 0.518 3.482
13 O -0.565 6.565
14 C 0.029 3.971
15 N -0.536 5.536
16 C 0.047 3.953
17 C 0.189 3.811
18 H 0.002 0.998
19 C -0.133 4.133
20 C -0.597 4.597
21 H 0.018 0.982
22 C -0.017 4.017
23 N -0.934 5.934
24 Si 1.083 2.917
25 H -0.277 1.277
26 H -0.238 1.238
27 H -0.286 1.286
28 C -0.148 4.148
29 H 0.069 0.931
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.072 0.928
35 H 0.072 0.928
36 H 0.148 0.852
37 H 0.153 0.847
38 H 0.137 0.863
39 H 0.066 0.934
40 H 0.074 0.926
41 H 0.414 0.586
42 H 0.122 0.878
43 H 0.077 0.923
44 H 0.041 0.959
45 H 0.068 0.932
46 H 0.018 0.982
47 H 0.040 0.960
48 H 0.043 0.957
49 H 0.065 0.935
50 H 0.251 0.749
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -37.178 -5.883 9.671 38.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.162 4.162
3 C -0.022 4.022
4 O -0.250 6.250
5 C 0.070 3.930
6 C -0.220 4.220
7 C -0.096 4.096
8 C -0.161 4.161
9 C -0.068 4.068
10 C 0.043 3.957
11 N -0.368 5.368
12 C 0.305 3.695
13 O -0.443 6.443
14 C -0.102 4.102
15 N -0.260 5.260
16 C -0.101 4.101
17 C 0.082 3.918
18 H 0.019 0.981
19 C -0.191 4.191
20 C -0.635 4.635
21 H 0.036 0.964
22 C -0.216 4.216
23 N -0.569 5.569
24 Si 0.903 3.097
25 H -0.203 1.203
26 H -0.161 1.161
27 H -0.212 1.212
28 C -0.167 4.167
29 H 0.088 0.912
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.090 0.910
35 H 0.091 0.909
36 H 0.166 0.834
37 H 0.171 0.829
38 H 0.155 0.845
39 H 0.085 0.915
40 H 0.092 0.908
41 H 0.250 0.750
42 H 0.140 0.860
43 H 0.094 0.906
44 H 0.060 0.940
45 H 0.087 0.913
46 H 0.037 0.963
47 H 0.059 0.941
48 H 0.062 0.938
49 H 0.084 0.916
50 H 0.060 0.940
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -36.083 -5.821 9.052 37.654
hybrid contribution 0.133 -0.365 1.281 1.338
sum -35.950 -6.185 10.333 37.914
Atomic orbital electron populations
1.21681 0.92790 1.03150 1.02780 1.21510 0.97191 0.94181 1.03279
1.23111 0.76907 0.99752 1.02394 1.86048 1.23052 1.27215 1.88669
1.19090 0.92176 0.84845 0.96883 1.21565 1.01166 0.91970 1.07314
1.21269 0.94276 0.97987 0.96114 1.21236 0.94351 0.98134 1.02334
1.19492 0.93927 0.92927 1.00415 1.20098 0.89401 1.02700 0.83520
1.45876 1.06410 1.75545 1.08984 1.20852 0.82187 0.74926 0.91543
1.90657 1.56340 1.49942 1.47314 1.22146 0.90294 1.04370 0.93359
1.61590 1.03726 1.36566 1.24154 1.22141 0.99651 0.89517 0.98791
1.19590 0.93704 0.93641 0.84907 0.98067 1.22035 0.99241 0.98111
0.99716 1.22078 0.92409 1.55339 0.93638 0.96413 1.27172 0.95173
0.93025 1.06213 1.70937 1.19385 1.37385 1.29238 0.83581 0.77411
0.76983 0.71693 1.20260 1.16124 1.21156 1.20391 0.91929 0.98231
1.06155 0.91230 0.91749 0.91776 0.91376 0.91356 0.90961 0.90929
0.83398 0.82913 0.84516 0.91540 0.90794 0.74953 0.86027 0.90563
0.94043 0.91296 0.96336 0.94130 0.93759 0.91611 0.93978 0.85652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.91 71.98 0.71 0.00 16
2 C -0.12 -1.07 6.30 30.60 0.19 -0.87 16
3 C 0.05 0.53 4.74 71.98 0.34 0.87 16
4 O -0.34 -5.75 10.14 -92.42 -0.94 -6.69 16
5 C 0.12 1.96 6.69 22.51 0.15 2.11 16
6 C -0.20 -2.56 9.04 22.36 0.20 -2.36 16
7 C -0.08 -0.92 10.04 22.26 0.22 -0.69 16
8 C -0.14 -2.03 9.70 22.28 0.22 -1.82 16
9 C -0.07 -1.15 5.25 -19.88 -0.10 -1.26 16
10 C 0.17 3.46 5.80 85.63 0.50 3.96 16
11 N -0.71 -15.75 5.55 -466.78 -2.59 -18.34 16
12 C 0.52 16.26 7.52 87.66 0.66 16.92 16
13 O -0.56 -23.05 14.33 -3.03 -0.04 -23.09 16
14 C 0.03 0.93 5.26 85.56 0.45 1.38 16
15 N -0.54 -23.45 4.36 -906.03 -3.95 -27.40 16
16 C 0.05 2.09 8.88 127.69 1.13 3.23 16
17 C 0.19 8.93 1.61 44.17 0.07 9.00 16
18 H 0.00 0.09 6.50 -2.39 -0.02 0.07 16
19 C -0.13 -5.53 8.17 71.98 0.59 -4.94 16
20 C -0.60 -34.79 8.01 25.60 0.20 -34.58 16
21 H 0.02 1.17 6.88 -2.91 -0.02 1.15 16
22 C -0.02 -1.02 5.19 84.66 0.44 -0.58 16
23 N -0.93 -59.59 13.70 21.45 0.29 -59.29 16
24 Si 1.08 49.38 26.39 68.60 1.81 51.19 16
25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
26 H -0.24 -9.29 6.02 99.48 0.60 -8.69 16
27 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16
28 C -0.15 -2.71 9.64 22.37 0.22 -2.49 16
29 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16
30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16
31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16
32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16
35 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16
36 H 0.15 1.17 6.30 -2.91 -0.02 1.15 16
37 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16
38 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16
39 H 0.07 1.52 8.08 -2.39 -0.02 1.51 16
40 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16
41 H 0.41 6.80 8.46 -92.71 -0.78 6.02 16
42 H 0.12 3.35 6.01 -2.39 -0.01 3.33 16
43 H 0.08 2.09 8.12 -2.39 -0.02 2.08 16
44 H 0.04 2.09 6.34 -2.39 -0.02 2.07 16
45 H 0.07 2.95 5.83 -2.39 -0.01 2.93 16
46 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16
47 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
48 H 0.04 1.88 5.84 -2.39 -0.01 1.87 16
49 H 0.07 2.11 6.66 -2.39 -0.02 2.10 16
50 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16
51 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16
Total: -1.00 -76.81 404.78 0.77 -76.04
By element:
Atomic # 1 Polarization: 19.72 SS G_CDS: -0.01 Total: 19.71 kcal
Atomic # 6 Polarization: -18.32 SS G_CDS: 6.20 Total: -12.13 kcal
Atomic # 7 Polarization: -98.78 SS G_CDS: -6.25 Total: -105.03 kcal
Atomic # 8 Polarization: -28.80 SS G_CDS: -0.98 Total: -29.78 kcal
Atomic # 14 Polarization: 49.38 SS G_CDS: 1.81 Total: 51.19 kcal
Total: -76.81 0.77 -76.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000161735672.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.482 kcal
(2) G-P(sol) polarization free energy of solvation -76.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds