Wall clock time and date at job start Tue Mar 31 2020 19:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 O 1.42902 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.42907 * 113.99841 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46603 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.00325 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00062 * 180.27920 * 7 6 5 9 9 C 1.38258 * 119.99784 * 359.47854 * 8 7 6 10 10 C 1.38211 * 120.00113 * 0.49766 * 9 8 7 11 11 C 1.38214 * 119.99514 * 180.02562 * 6 5 4 12 12 C 1.50700 * 120.00249 * 359.97438 * 11 6 5 13 13 N 1.46498 * 109.46918 * 79.99853 * 12 11 6 14 14 C 1.34778 * 120.00107 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99577 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00300 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.47123 * 40.00122 * 16 14 13 18 18 N 1.46901 * 109.47140 * 160.00418 * 16 14 13 19 19 C 1.52998 * 109.47097 * 280.00368 * 16 14 13 20 20 C 1.52998 * 109.47240 * 175.00032 * 19 16 14 21 21 C 1.50701 * 109.47393 * 180.02562 * 20 19 16 22 22 H 1.07998 * 120.00012 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00132 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00123 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00292 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46631 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47083 * 119.99400 * 25 23 21 28 28 H 1.48495 * 109.47520 * 239.99883 * 25 23 21 29 29 H 1.09009 * 109.46950 * 60.00111 * 1 2 3 30 30 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47151 * 300.00078 * 1 2 3 32 32 H 1.08996 * 109.47151 * 239.99922 * 2 1 3 33 33 H 1.08993 * 109.47092 * 119.99500 * 2 1 3 34 34 H 1.09001 * 109.47253 * 59.99490 * 3 2 1 35 35 H 1.09000 * 109.47310 * 300.00044 * 3 2 1 36 36 H 1.09000 * 109.47285 * 59.99954 * 5 4 3 37 37 H 1.08992 * 109.47005 * 299.99806 * 5 4 3 38 38 H 1.08002 * 119.99676 * 359.97438 * 7 6 5 39 39 H 1.07998 * 120.00348 * 179.72205 * 8 7 6 40 40 H 1.08004 * 120.00386 * 180.25925 * 9 8 7 41 41 H 1.08001 * 120.00363 * 179.76462 * 10 9 8 42 42 H 1.09000 * 109.47106 * 199.99834 * 12 11 6 43 43 H 1.08996 * 109.46838 * 320.00242 * 12 11 6 44 44 H 0.96998 * 120.00499 * 0.02562 * 13 12 11 45 45 H 1.00893 * 111.00049 * 59.99922 * 18 16 14 46 46 H 1.00907 * 110.99808 * 183.95762 * 18 16 14 47 47 H 1.09005 * 109.46921 * 294.99764 * 19 16 14 48 48 H 1.08994 * 109.47357 * 54.99685 * 19 16 14 49 49 H 1.08997 * 109.47255 * 299.99775 * 20 19 16 50 50 H 1.09000 * 109.47274 * 60.00005 * 20 19 16 51 51 H 0.96998 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7481 -0.0012 6 6 5.5525 2.6290 -0.0012 7 6 6.1471 1.3808 -0.0011 8 6 7.5249 1.2717 0.0047 9 6 8.3086 2.4107 -0.0004 10 6 7.7142 3.6585 -0.0009 11 6 6.3359 3.7677 -0.0012 12 6 5.6878 5.1282 -0.0019 13 7 5.2608 5.4663 1.3581 14 6 4.6527 6.6444 1.6002 15 8 4.4586 7.4245 0.6921 16 6 4.2138 6.9925 2.9992 17 1 4.9732 6.6663 3.7099 18 7 4.0331 8.4462 3.1084 19 6 2.8906 6.2894 3.3084 20 6 2.5081 6.5413 4.7683 21 6 1.2051 5.8483 5.0730 22 1 0.7000 5.2849 4.3024 23 6 0.6572 5.9344 6.3353 24 7 1.2720 6.6208 7.2736 25 14 -0.9583 5.0760 6.7129 26 1 -1.4428 4.3756 5.4962 27 1 -0.7513 4.0885 7.8024 28 1 -1.9648 6.0808 7.1401 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7290 3.2893 0.8887 37 1 3.7282 3.2886 -0.8912 38 1 5.5349 0.4911 -0.0007 39 1 7.9894 0.2967 0.0093 40 1 9.3853 2.3255 0.0000 41 1 8.3264 4.5483 -0.0010 42 1 6.4036 5.8714 -0.3533 43 1 4.8211 5.1174 -0.6627 44 1 5.4163 4.8425 2.0845 45 1 3.3336 8.7734 2.4591 46 1 3.8014 8.7118 4.0539 47 1 2.1101 6.6807 2.6557 48 1 3.0007 5.2180 3.1413 49 1 3.2885 6.1501 5.4210 50 1 2.3980 7.6128 4.9353 51 1 0.8868 6.6811 8.1617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424101336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:22 Heat of formation + Delta-G solvation = -106.585349 kcal Electronic energy + Delta-G solvation = -28788.031250 eV Core-core repulsion = 24878.214633 eV Total energy + Delta-G solvation = -3909.816616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25699 -40.38786 -38.85042 -37.15705 -36.03795 -34.84247 -34.81005 -32.76977 -32.20934 -31.69258 -28.76599 -27.86861 -26.95991 -26.28183 -25.17562 -22.88581 -22.57008 -22.41349 -21.68220 -21.15438 -18.96672 -18.16497 -17.77729 -17.70634 -17.34563 -17.04791 -16.56249 -16.32505 -16.16086 -15.74795 -15.62704 -15.51689 -15.35560 -15.14260 -14.77406 -14.60749 -14.11779 -14.02769 -13.92280 -13.69590 -13.62915 -13.40398 -13.04370 -13.02545 -12.96081 -12.81807 -12.69872 -12.51023 -12.07003 -11.86420 -11.84497 -11.82214 -11.77011 -11.71421 -11.29673 -10.84973 -10.78525 -10.57387 -10.15687 -9.82129 -9.65429 -9.58881 -8.22273 -6.32437 0.23408 0.44114 1.37525 1.39118 1.50466 1.59265 2.15770 2.39014 2.52231 2.85916 3.11651 3.57724 3.74314 3.77623 3.82144 3.96166 3.99149 4.08717 4.11619 4.14243 4.23554 4.29635 4.34291 4.36314 4.37855 4.53078 4.57668 4.60066 4.64573 4.67660 4.78832 4.82875 4.84430 4.99655 5.07227 5.10126 5.12893 5.20201 5.31137 5.34118 5.45658 5.49981 5.58335 5.60970 5.64564 5.79779 6.03449 6.06285 6.15863 6.20325 6.47096 6.48440 6.83044 7.18602 7.36739 8.88734 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007276 B = 0.003538 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3847.490328 B = 7913.284793 C =10583.564592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.055 3.945 4 O -0.394 6.394 5 C 0.101 3.899 6 C -0.081 4.081 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.101 4.101 11 C -0.109 4.109 12 C 0.164 3.836 13 N -0.715 5.715 14 C 0.529 3.471 15 O -0.568 6.568 16 C 0.080 3.920 17 H 0.108 0.892 18 N -0.829 5.829 19 C -0.119 4.119 20 C 0.030 3.970 21 C -0.543 4.543 22 H 0.054 0.946 23 C 0.006 3.994 24 N -0.926 5.926 25 Si 0.956 3.044 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.279 1.279 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.410 0.590 45 H 0.344 0.656 46 H 0.353 0.647 47 H 0.045 0.955 48 H 0.062 0.938 49 H 0.001 0.999 50 H 0.003 0.997 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.418 -13.333 -16.683 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.022 4.022 4 O -0.314 6.314 5 C 0.025 3.975 6 C -0.081 4.081 7 C -0.129 4.129 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.120 4.120 11 C -0.109 4.109 12 C 0.041 3.959 13 N -0.368 5.368 14 C 0.316 3.684 15 O -0.447 6.447 16 C -0.035 4.035 17 H 0.126 0.874 18 N -0.361 5.361 19 C -0.159 4.159 20 C -0.007 4.007 21 C -0.581 4.581 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.566 5.566 25 Si 0.782 3.218 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.205 1.205 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.246 0.754 45 H 0.157 0.843 46 H 0.168 0.832 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.019 0.981 50 H 0.022 0.978 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.141 -12.827 -17.396 24.316 hybrid contribution -2.086 -0.413 1.202 2.443 sum 9.055 -13.240 -16.194 22.793 Atomic orbital electron populations 1.21707 0.93892 1.02968 1.02173 1.21427 0.96433 0.94399 1.03209 1.22715 0.79925 0.99075 1.00456 1.87775 1.20584 1.27457 1.95579 1.21228 0.90498 0.84966 1.00818 1.19612 0.93682 0.93907 1.00920 1.21110 0.95398 0.97142 0.99289 1.21533 0.93233 1.00021 0.98332 1.21493 1.01331 0.91834 0.99321 1.21274 0.93107 0.99089 0.98515 1.19500 0.94277 0.92810 1.04336 1.20141 0.98988 0.93080 0.83709 1.45973 1.60537 1.19138 1.11120 1.20683 0.76219 0.80880 0.90608 1.90628 1.56627 1.50295 1.47136 1.21410 0.98267 0.90369 0.93459 0.87440 1.58755 1.55154 1.10123 1.12024 1.22115 0.95127 1.00200 0.98455 1.18969 0.95132 0.95750 0.90883 1.21626 1.07742 1.32211 0.96482 0.92751 1.25843 1.00996 0.96064 0.96321 1.70064 1.40737 1.42244 1.03583 0.85525 0.79499 0.78449 0.78369 1.18910 1.20327 1.20514 0.92000 0.90842 0.93043 0.90654 0.91571 0.93881 0.92622 0.92454 0.91713 0.85225 0.83699 0.83290 0.84149 0.90276 0.91497 0.75419 0.84283 0.83236 0.93591 0.91891 0.98065 0.97848 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.05 6.30 30.60 0.19 -1.85 16 3 C 0.05 1.14 5.94 71.98 0.43 1.57 16 4 O -0.39 -9.23 8.82 -148.98 -1.31 -10.54 16 5 C 0.10 2.29 5.17 71.24 0.37 2.66 16 6 C -0.08 -1.72 5.88 -19.86 -0.12 -1.83 16 7 C -0.11 -2.19 9.38 22.27 0.21 -1.98 16 8 C -0.11 -1.76 10.05 22.27 0.22 -1.53 16 9 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 10 C -0.10 -1.67 9.67 22.27 0.22 -1.45 16 11 C -0.11 -2.14 5.25 -19.86 -0.10 -2.25 16 12 C 0.16 3.63 5.21 85.63 0.45 4.08 16 13 N -0.72 -17.80 5.35 -466.80 -2.50 -20.30 16 14 C 0.53 16.88 7.08 87.66 0.62 17.50 16 15 O -0.57 -21.59 16.25 -3.04 -0.05 -21.64 16 16 C 0.08 2.67 3.21 44.17 0.14 2.82 16 17 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 18 N -0.83 -28.44 8.94 -171.80 -1.54 -29.98 16 19 C -0.12 -4.60 4.78 30.59 0.15 -4.45 16 20 C 0.03 1.45 4.74 29.85 0.14 1.60 16 21 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16 22 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 23 C 0.01 0.35 5.46 84.65 0.46 0.81 16 24 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 25 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 26 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.41 7.94 -2.39 -0.02 1.39 16 37 H 0.06 1.41 7.55 -2.39 -0.02 1.39 16 38 H 0.13 2.59 7.01 -2.91 -0.02 2.57 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.14 1.86 8.04 -2.91 -0.02 1.84 16 42 H 0.08 1.73 8.00 -2.39 -0.02 1.71 16 43 H 0.07 1.59 7.06 -2.39 -0.02 1.57 16 44 H 0.41 9.16 8.46 -92.71 -0.78 8.37 16 45 H 0.34 12.01 8.58 -89.70 -0.77 11.24 16 46 H 0.35 12.27 7.55 -89.69 -0.68 11.59 16 47 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.00 0.17 6.87 -2.39 -0.02 0.15 16 51 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.24 419.47 0.16 -66.08 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.30 Total: 41.85 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.54 Total: -16.80 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.75 Total: -104.12 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.36 Total: -32.18 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.24 0.16 -66.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424101336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.506 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds