Wall clock time and date at job start Tue Mar 31 2020 19:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38758 * 120.05922 * 359.72826 * 5 4 3 7 7 C 1.38122 * 119.94483 * 179.73989 * 6 5 4 8 8 C 1.50693 * 119.97160 * 180.25226 * 7 6 5 9 9 C 1.38286 * 120.05406 * 0.51239 * 7 6 5 10 10 C 1.38245 * 120.11304 * 359.76190 * 9 7 6 11 11 C 1.38173 * 120.05607 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.02790 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47110 * 259.97520 * 12 11 10 14 14 C 1.34771 * 120.00168 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00348 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99747 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.46983 * 40.00256 * 16 14 13 18 18 N 1.46906 * 109.46920 * 159.99960 * 16 14 13 19 19 C 1.52999 * 109.47305 * 279.99797 * 16 14 13 20 20 C 1.53000 * 109.46856 * 175.00000 * 19 16 14 21 21 C 1.50706 * 109.46698 * 180.02562 * 20 19 16 22 22 H 1.07997 * 120.00255 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99678 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00180 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99755 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47517 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47402 * 120.00212 * 25 23 21 28 28 H 1.48501 * 109.47162 * 239.99904 * 25 23 21 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.08003 * 120.02200 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.47391 * 270.26006 * 8 7 6 38 38 H 1.09008 * 109.47389 * 30.25920 * 8 7 6 39 39 H 1.09001 * 109.46898 * 150.25618 * 8 7 6 40 40 H 1.08003 * 119.94351 * 179.74087 * 9 7 6 41 41 H 1.08000 * 119.97218 * 179.97438 * 10 9 7 42 42 H 1.09003 * 109.47318 * 19.97404 * 12 11 10 43 43 H 1.08999 * 109.47379 * 139.97263 * 12 11 10 44 44 H 0.96998 * 119.99805 * 359.97438 * 13 12 11 45 45 H 1.00909 * 110.99655 * 60.00054 * 18 16 14 46 46 H 1.00893 * 111.00083 * 183.95108 * 18 16 14 47 47 H 1.08994 * 109.47447 * 295.00551 * 19 16 14 48 48 H 1.09008 * 109.46611 * 55.00567 * 19 16 14 49 49 H 1.08995 * 109.47094 * 300.00218 * 20 19 16 50 50 H 1.08996 * 109.47225 * 60.00539 * 20 19 16 51 51 H 0.96994 * 119.99648 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3314 3.8179 -0.0048 7 6 3.9608 5.0473 0.0011 8 6 3.1419 6.3123 0.0018 9 6 5.3418 5.1183 0.0010 10 6 6.0959 3.9597 -0.0001 11 6 5.4710 2.7273 -0.0005 12 6 6.2936 1.4647 -0.0011 13 7 6.3586 0.9248 -1.3615 14 6 7.0464 -0.2084 -1.6046 15 8 7.6119 -0.7810 -0.6974 16 6 7.1127 -0.7640 -3.0040 17 1 7.2296 0.0542 -3.7146 18 7 8.2588 -1.6763 -3.1148 19 6 5.8224 -1.5264 -3.3117 20 6 5.8361 -1.9836 -4.7717 21 6 4.5648 -2.7341 -5.0749 22 1 3.8213 -2.8708 -4.3036 23 6 4.3509 -3.2461 -6.3372 24 7 5.2565 -3.0800 -7.2763 25 14 2.7749 -4.1756 -6.7132 26 1 1.9264 -4.2244 -5.4956 27 1 2.0398 -3.4835 -7.8021 28 1 3.1060 -5.5587 -7.1409 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2527 3.7629 -0.0093 37 1 2.9443 6.6179 -1.0257 38 1 2.1973 6.1335 0.5156 39 1 3.6916 7.1007 0.5160 40 1 5.8322 6.0807 0.0014 41 1 7.1743 4.0178 -0.0006 42 1 7.3013 1.6873 0.3499 43 1 5.8328 0.7304 0.6596 44 1 5.9066 1.3830 -2.0872 45 1 8.1739 -2.4440 -2.4655 46 1 8.3633 -2.0123 -4.0603 47 1 5.7499 -2.3964 -2.6591 48 1 4.9657 -0.8736 -3.1434 49 1 5.9085 -1.1136 -5.4242 50 1 6.6926 -2.6363 -4.9400 51 1 5.1062 -3.4406 -8.1641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424126514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:33 Heat of formation + Delta-G solvation = -83.340707 kcal Electronic energy + Delta-G solvation = -28920.796604 eV Core-core repulsion = 25011.987951 eV Total energy + Delta-G solvation = -3908.808653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65682 -39.34857 -38.02584 -35.63406 -34.98447 -34.07174 -32.81894 -32.56533 -30.21595 -29.83617 -28.81331 -27.03580 -26.34958 -24.72982 -23.28385 -22.92284 -21.73936 -20.87921 -20.62236 -19.68760 -17.89542 -17.29449 -16.53000 -16.48983 -16.20765 -16.08646 -15.34892 -14.76390 -14.51866 -14.48307 -14.45597 -14.35970 -14.24727 -13.83377 -13.80210 -13.25884 -12.98605 -12.96040 -12.84324 -12.61076 -12.35466 -12.30872 -12.18919 -12.05683 -11.63530 -11.56955 -11.42033 -11.40731 -11.05452 -10.94713 -10.89728 -10.76961 -10.64923 -9.94332 -9.87818 -9.28186 -9.19242 -8.97020 -8.81534 -8.42291 -8.34730 -8.09539 -6.06728 -4.09349 0.96639 1.20631 2.96104 3.07986 3.26413 3.26844 3.34432 3.38227 3.74929 4.37599 4.40701 4.50719 4.65209 4.65773 4.70605 4.81904 4.95743 4.98061 5.14620 5.17654 5.19420 5.26145 5.26988 5.28704 5.30146 5.39806 5.44646 5.47949 5.52434 5.67236 5.73383 5.78340 5.85168 5.87887 5.91890 6.00734 6.05212 6.23745 6.32319 6.36526 6.56045 6.59303 6.66153 6.93373 7.21237 7.51707 7.56597 7.66459 7.84239 7.91044 7.97799 8.34219 8.60686 8.96903 9.55210 11.04308 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.003166 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.184199 B = 8841.979153 C =10516.547455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.060 3.940 4 O -0.304 6.304 5 C 0.155 3.845 6 C -0.214 4.214 7 C -0.041 4.041 8 C -0.117 4.117 9 C -0.163 4.163 10 C -0.058 4.058 11 C -0.146 4.146 12 C 0.175 3.825 13 N -0.725 5.725 14 C 0.526 3.474 15 O -0.542 6.542 16 C 0.075 3.925 17 H 0.095 0.905 18 N -0.831 5.831 19 C -0.136 4.136 20 C 0.024 3.976 21 C -0.521 4.521 22 H 0.055 0.945 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.400 0.600 45 H 0.345 0.655 46 H 0.353 0.647 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 17.891 16.009 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.015 4.015 4 O -0.217 6.217 5 C 0.108 3.892 6 C -0.233 4.233 7 C -0.042 4.042 8 C -0.173 4.173 9 C -0.181 4.181 10 C -0.076 4.076 11 C -0.147 4.147 12 C 0.052 3.948 13 N -0.378 5.378 14 C 0.313 3.687 15 O -0.418 6.418 16 C -0.040 4.040 17 H 0.113 0.887 18 N -0.362 5.362 19 C -0.175 4.175 20 C -0.013 4.013 21 C -0.559 4.559 22 H 0.073 0.927 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.719 3.281 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.234 0.766 45 H 0.158 0.842 46 H 0.168 0.832 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.851 17.841 16.719 24.927 hybrid contribution -2.112 -0.785 -0.986 2.459 sum -6.963 17.056 15.733 24.226 Atomic orbital electron populations 1.21677 0.94257 1.02720 1.01899 1.21502 0.95988 0.94594 1.04326 1.22913 0.78210 0.99212 1.01176 1.86164 1.21412 1.26337 1.87792 1.18838 0.91605 0.84398 0.94320 1.21107 0.99980 0.91749 1.10444 1.19736 0.94023 0.94502 0.95899 1.20834 0.99345 0.94541 1.02630 1.20914 0.93095 0.98440 1.05680 1.20940 1.00032 0.90784 0.95874 1.19257 0.90581 0.95641 1.09247 1.19873 0.98437 0.91585 0.84930 1.46005 1.54752 1.26978 1.10078 1.20845 0.76970 0.79527 0.91376 1.90622 1.45223 1.59268 1.46682 1.21462 0.92582 0.97399 0.92578 0.88745 1.58745 1.41619 1.23838 1.12047 1.22353 0.94621 0.98986 1.01572 1.19107 0.97368 0.96352 0.88484 1.21225 1.03684 1.34798 0.96208 0.92695 1.25015 0.96686 0.96268 0.96397 1.69962 1.34239 1.45921 1.03112 0.86545 0.83556 0.79683 0.78290 1.19768 1.20978 1.20962 0.92307 0.91568 0.92669 0.90133 0.90844 0.91901 0.92250 0.85430 0.90779 0.91544 0.91258 0.85796 0.85071 0.91075 0.90732 0.76568 0.84176 0.83181 0.92756 0.92564 0.96392 0.96416 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.25 6.30 -26.73 -0.17 -1.42 16 3 C 0.06 0.58 4.74 37.16 0.18 0.76 16 4 O -0.30 -3.80 9.37 -19.44 -0.18 -3.98 16 5 C 0.15 1.80 6.66 -39.22 -0.26 1.54 16 6 C -0.21 -2.11 8.69 -39.43 -0.34 -2.46 16 7 C -0.04 -0.37 5.88 -104.65 -0.62 -0.98 16 8 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 9 C -0.16 -1.43 9.70 -39.56 -0.38 -1.82 16 10 C -0.06 -0.56 9.67 -39.60 -0.38 -0.94 16 11 C -0.15 -1.68 5.26 -104.47 -0.55 -2.23 16 12 C 0.18 2.32 5.46 -5.19 -0.03 2.29 16 13 N -0.73 -10.54 5.55 -61.47 -0.34 -10.88 16 14 C 0.53 9.31 7.08 -10.99 -0.08 9.23 16 15 O -0.54 -11.17 16.25 5.56 0.09 -11.08 16 16 C 0.07 1.34 3.21 -68.86 -0.22 1.12 16 17 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 18 N -0.83 -14.98 8.94 -5.65 -0.05 -15.03 16 19 C -0.14 -2.76 4.78 -26.73 -0.13 -2.89 16 20 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 21 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 22 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 25 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 35 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 36 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 39 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.13 1.07 8.04 -52.49 -0.42 0.64 16 42 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 43 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 44 H 0.40 5.33 8.46 -40.82 -0.35 4.99 16 45 H 0.35 6.31 8.58 -39.29 -0.34 5.97 16 46 H 0.35 6.33 7.55 -39.30 -0.30 6.04 16 47 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 51 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 419.59 15.07 6.32 6.32 Total: -1.00 -32.49 419.59 -9.98 -42.47 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.74 Total: 13.04 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.80 Total: -11.71 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.34 Total: -51.40 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.09 Total: -15.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.49 -9.98 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.874 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds