Wall clock time and date at job start Tue Mar 31 2020 19:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38758 * 120.05922 * 359.72826 * 5 4 3 7 7 C 1.38122 * 119.94483 * 179.73989 * 6 5 4 8 8 C 1.50693 * 119.97160 * 180.25226 * 7 6 5 9 9 C 1.38286 * 120.05406 * 0.51239 * 7 6 5 10 10 C 1.38245 * 120.11304 * 359.76190 * 9 7 6 11 11 C 1.38173 * 120.05607 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.02790 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47110 * 259.97520 * 12 11 10 14 14 C 1.34771 * 120.00168 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00348 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99747 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.46983 * 40.00256 * 16 14 13 18 18 N 1.46906 * 109.46920 * 159.99960 * 16 14 13 19 19 C 1.52999 * 109.47305 * 279.99797 * 16 14 13 20 20 C 1.53000 * 109.46856 * 175.00000 * 19 16 14 21 21 C 1.50706 * 109.46698 * 180.02562 * 20 19 16 22 22 H 1.07997 * 120.00255 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99678 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00180 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99755 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47517 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47402 * 120.00212 * 25 23 21 28 28 H 1.48501 * 109.47162 * 239.99904 * 25 23 21 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.08003 * 120.02200 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.47391 * 270.26006 * 8 7 6 38 38 H 1.09008 * 109.47389 * 30.25920 * 8 7 6 39 39 H 1.09001 * 109.46898 * 150.25618 * 8 7 6 40 40 H 1.08003 * 119.94351 * 179.74087 * 9 7 6 41 41 H 1.08000 * 119.97218 * 179.97438 * 10 9 7 42 42 H 1.09003 * 109.47318 * 19.97404 * 12 11 10 43 43 H 1.08999 * 109.47379 * 139.97263 * 12 11 10 44 44 H 0.96998 * 119.99805 * 359.97438 * 13 12 11 45 45 H 1.00909 * 110.99655 * 60.00054 * 18 16 14 46 46 H 1.00893 * 111.00083 * 183.95108 * 18 16 14 47 47 H 1.08994 * 109.47447 * 295.00551 * 19 16 14 48 48 H 1.09008 * 109.46611 * 55.00567 * 19 16 14 49 49 H 1.08995 * 109.47094 * 300.00218 * 20 19 16 50 50 H 1.08996 * 109.47225 * 60.00539 * 20 19 16 51 51 H 0.96994 * 119.99648 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3314 3.8179 -0.0048 7 6 3.9608 5.0473 0.0011 8 6 3.1419 6.3123 0.0018 9 6 5.3418 5.1183 0.0010 10 6 6.0959 3.9597 -0.0001 11 6 5.4710 2.7273 -0.0005 12 6 6.2936 1.4647 -0.0011 13 7 6.3586 0.9248 -1.3615 14 6 7.0464 -0.2084 -1.6046 15 8 7.6119 -0.7810 -0.6974 16 6 7.1127 -0.7640 -3.0040 17 1 7.2296 0.0542 -3.7146 18 7 8.2588 -1.6763 -3.1148 19 6 5.8224 -1.5264 -3.3117 20 6 5.8361 -1.9836 -4.7717 21 6 4.5648 -2.7341 -5.0749 22 1 3.8213 -2.8708 -4.3036 23 6 4.3509 -3.2461 -6.3372 24 7 5.2565 -3.0800 -7.2763 25 14 2.7749 -4.1756 -6.7132 26 1 1.9264 -4.2244 -5.4956 27 1 2.0398 -3.4835 -7.8021 28 1 3.1060 -5.5587 -7.1409 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2527 3.7629 -0.0093 37 1 2.9443 6.6179 -1.0257 38 1 2.1973 6.1335 0.5156 39 1 3.6916 7.1007 0.5160 40 1 5.8322 6.0807 0.0014 41 1 7.1743 4.0178 -0.0006 42 1 7.3013 1.6873 0.3499 43 1 5.8328 0.7304 0.6596 44 1 5.9066 1.3830 -2.0872 45 1 8.1739 -2.4440 -2.4655 46 1 8.3633 -2.0123 -4.0603 47 1 5.7499 -2.3964 -2.6591 48 1 4.9657 -0.8736 -3.1434 49 1 5.9085 -1.1136 -5.4242 50 1 6.6926 -2.6363 -4.9400 51 1 5.1062 -3.4406 -8.1641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424126514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:32 Heat of formation + Delta-G solvation = -104.081387 kcal Electronic energy + Delta-G solvation = -28921.695987 eV Core-core repulsion = 25011.987951 eV Total energy + Delta-G solvation = -3909.708036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51161 -40.71572 -38.80875 -37.17503 -36.21214 -34.86934 -34.83890 -33.45420 -31.69310 -30.95920 -29.74339 -28.11855 -27.56341 -26.07179 -24.70655 -23.66353 -22.54493 -22.34428 -21.67185 -21.12638 -19.01815 -18.58093 -18.11388 -17.46427 -17.31011 -17.11612 -16.61314 -16.31932 -16.01168 -15.78796 -15.43853 -15.17608 -15.15801 -15.08950 -14.75259 -14.56633 -14.34868 -14.07722 -13.76510 -13.67108 -13.57998 -13.40957 -13.09423 -12.99935 -12.95668 -12.80710 -12.68845 -12.50589 -12.31847 -12.13551 -12.12673 -11.83072 -11.74464 -11.68976 -11.52439 -11.29753 -10.80373 -10.57324 -10.10107 -9.78025 -9.63728 -9.11836 -8.22121 -6.32442 0.20441 0.45912 1.37533 1.38912 1.50961 1.62966 2.18433 2.19852 2.39292 2.81001 3.11331 3.59678 3.74705 3.77278 3.82258 3.89845 3.92440 4.02232 4.11194 4.15755 4.22463 4.24232 4.26788 4.46176 4.51117 4.56359 4.60780 4.65493 4.69060 4.75524 4.82647 4.84232 4.85605 4.92509 5.06754 5.08972 5.14016 5.23908 5.29629 5.32305 5.39617 5.45486 5.48704 5.62926 5.64351 5.79634 5.86805 6.06158 6.20799 6.42369 6.47683 6.54281 6.82541 7.22923 7.36462 8.88965 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.003166 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.184199 B = 8841.979153 C =10516.547455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.058 3.942 4 O -0.330 6.330 5 C 0.138 3.862 6 C -0.220 4.220 7 C -0.042 4.042 8 C -0.116 4.116 9 C -0.164 4.164 10 C -0.059 4.059 11 C -0.163 4.163 12 C 0.180 3.820 13 N -0.710 5.710 14 C 0.527 3.473 15 O -0.573 6.573 16 C 0.082 3.918 17 H 0.108 0.892 18 N -0.828 5.828 19 C -0.117 4.117 20 C 0.031 3.969 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.006 3.994 24 N -0.926 5.926 25 Si 0.959 3.041 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.279 1.279 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.408 0.592 45 H 0.344 0.656 46 H 0.353 0.647 47 H 0.042 0.958 48 H 0.060 0.940 49 H 0.001 0.999 50 H 0.004 0.996 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 19.883 16.511 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.016 4.016 4 O -0.244 6.244 5 C 0.092 3.908 6 C -0.239 4.239 7 C -0.042 4.042 8 C -0.172 4.172 9 C -0.182 4.182 10 C -0.077 4.077 11 C -0.164 4.164 12 C 0.057 3.943 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.452 6.452 16 C -0.034 4.034 17 H 0.126 0.874 18 N -0.359 5.359 19 C -0.157 4.157 20 C -0.006 4.006 21 C -0.581 4.581 22 H 0.071 0.929 23 C -0.193 4.193 24 N -0.566 5.566 25 Si 0.784 3.216 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.205 1.205 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.243 0.757 45 H 0.157 0.843 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.020 0.980 50 H 0.022 0.978 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.301 19.868 17.226 27.040 hybrid contribution -1.666 -1.328 -1.126 2.410 sum -7.966 18.540 16.100 25.815 Atomic orbital electron populations 1.21656 0.92493 1.03013 1.02931 1.21503 0.97514 0.94696 1.02722 1.23033 0.77203 0.99078 1.02330 1.86127 1.22762 1.27333 1.88168 1.19049 0.91857 0.84721 0.95221 1.21320 1.00719 0.91554 1.10289 1.20133 0.94500 0.95202 0.94356 1.20899 0.99490 0.93459 1.03398 1.21242 0.93245 0.99081 1.04618 1.21147 1.00930 0.90416 0.95246 1.19184 0.90556 0.95332 1.11373 1.19841 0.98882 0.92076 0.83477 1.45946 1.53260 1.25838 1.11127 1.20708 0.77124 0.80123 0.90659 1.90608 1.46880 1.60425 1.47323 1.21391 0.91132 0.97444 0.93394 0.87446 1.58759 1.41395 1.23833 1.11950 1.22092 0.96305 0.98846 0.98482 1.18960 0.95824 0.95096 0.90695 1.21622 1.04712 1.35304 0.96502 0.92883 1.25867 1.00064 0.97125 0.96237 1.70070 1.36141 1.46847 1.03567 0.85489 0.79502 0.78280 0.78343 1.18994 1.20136 1.20489 0.91908 0.91675 0.90960 0.92707 0.91467 0.91252 0.90402 0.84059 0.90053 0.90703 0.89860 0.83377 0.83693 0.90658 0.92716 0.75714 0.84338 0.83237 0.93888 0.92166 0.98029 0.97814 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.13 -2.53 6.30 30.59 0.19 -2.34 16 3 C 0.06 1.10 4.74 71.98 0.34 1.44 16 4 O -0.33 -8.32 9.37 -92.47 -0.87 -9.19 16 5 C 0.14 3.13 6.66 22.51 0.15 3.28 16 6 C -0.22 -3.98 8.69 22.37 0.19 -3.79 16 7 C -0.04 -0.63 5.88 -19.88 -0.12 -0.75 16 8 C -0.12 -1.06 10.01 71.23 0.71 -0.35 16 9 C -0.16 -2.45 9.70 22.28 0.22 -2.24 16 10 C -0.06 -1.05 9.67 22.26 0.22 -0.83 16 11 C -0.16 -3.67 5.26 -19.77 -0.10 -3.77 16 12 C 0.18 4.81 5.46 85.63 0.47 5.28 16 13 N -0.71 -20.65 5.55 -466.79 -2.59 -23.24 16 14 C 0.53 18.75 7.08 87.66 0.62 19.37 16 15 O -0.57 -23.93 16.25 -3.02 -0.05 -23.98 16 16 C 0.08 2.94 3.21 44.17 0.14 3.08 16 17 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 18 N -0.83 -30.12 8.94 -171.79 -1.54 -31.66 16 19 C -0.12 -4.85 4.78 30.59 0.15 -4.71 16 20 C 0.03 1.58 4.74 29.85 0.14 1.73 16 21 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 22 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 23 C 0.01 0.31 5.46 84.65 0.46 0.77 16 24 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 25 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.19 7.65 -2.39 -0.02 1.17 16 35 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 36 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.58 8.09 -2.38 -0.02 0.56 16 39 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.15 2.08 8.04 -2.91 -0.02 2.06 16 42 H 0.08 1.93 8.00 -2.39 -0.02 1.91 16 43 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 44 H 0.41 10.72 8.46 -92.71 -0.78 9.94 16 45 H 0.34 12.76 8.58 -89.69 -0.77 11.99 16 46 H 0.35 12.85 7.55 -89.70 -0.68 12.17 16 47 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.00 0.19 6.87 -2.39 -0.02 0.17 16 51 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -69.74 419.59 0.71 -69.03 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -1.29 Total: 43.20 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.73 Total: -15.43 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.84 Total: -109.41 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.92 Total: -33.17 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.74 0.71 -69.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.048 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds