Wall clock time and date at job start Tue Mar 31 2020 19:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47210 * 2 1 4 4 O 1.42901 * 109.46742 * 119.99730 * 2 1 3 5 5 C 1.35902 * 116.99970 * 154.94396 * 4 2 1 6 6 C 1.38746 * 120.05636 * 185.45195 * 5 4 2 7 7 C 1.38127 * 119.94552 * 179.97438 * 6 5 4 8 8 C 1.38282 * 120.05341 * 359.74813 * 7 6 5 9 9 C 1.38243 * 120.11173 * 0.50618 * 8 7 6 10 10 C 1.50708 * 119.97561 * 179.76901 * 9 8 7 11 11 N 1.46500 * 109.46834 * 269.72567 * 10 9 8 12 12 C 1.46499 * 119.99986 * 269.99346 * 11 10 9 13 13 C 1.34782 * 120.00010 * 90.00120 * 11 10 9 14 14 O 1.21281 * 120.00164 * 359.97438 * 13 11 10 15 15 C 1.50700 * 119.99922 * 180.27362 * 13 11 10 16 16 H 1.09005 * 109.47124 * 39.72154 * 15 13 11 17 17 N 1.46897 * 109.47374 * 159.72234 * 15 13 11 18 18 C 1.52995 * 109.47151 * 279.72107 * 15 13 11 19 19 C 1.52995 * 109.47335 * 174.99744 * 18 15 13 20 20 C 1.50700 * 109.47374 * 179.97438 * 19 18 15 21 21 H 1.08006 * 119.99959 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00512 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99665 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00548 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46767 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46940 * 120.00388 * 24 22 20 27 27 H 1.48495 * 109.47214 * 240.00643 * 24 22 20 28 28 C 1.38165 * 120.05958 * 359.49390 * 9 8 7 29 29 H 1.09004 * 109.47644 * 300.00591 * 1 2 3 30 30 H 1.09005 * 109.47365 * 60.00601 * 1 2 3 31 31 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47140 * 239.99100 * 2 1 3 33 33 H 1.08994 * 109.47402 * 59.99151 * 3 2 1 34 34 H 1.08996 * 109.47041 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46921 * 299.99693 * 3 2 1 36 36 H 1.07999 * 120.03144 * 359.97438 * 6 5 4 37 37 H 1.07999 * 119.97107 * 180.02562 * 7 6 5 38 38 H 1.08006 * 119.94525 * 180.27429 * 8 7 6 39 39 H 1.08994 * 109.47211 * 149.72302 * 10 9 8 40 40 H 1.09001 * 109.46428 * 29.71928 * 10 9 8 41 41 H 1.09001 * 109.47072 * 270.00301 * 12 11 10 42 42 H 1.09003 * 109.47163 * 30.00469 * 12 11 10 43 43 H 1.09004 * 109.47069 * 150.00471 * 12 11 10 44 44 H 1.00907 * 110.99573 * 296.04832 * 17 15 13 45 45 H 1.00898 * 111.00173 * 59.99421 * 17 15 13 46 46 H 1.09002 * 109.47529 * 295.00297 * 18 15 13 47 47 H 1.09007 * 109.47224 * 55.00034 * 18 15 13 48 48 H 1.09003 * 109.47419 * 299.99947 * 19 18 15 49 49 H 1.08997 * 109.47091 * 60.00372 * 19 18 15 50 50 H 0.96995 * 119.99862 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.03602 * 180.23506 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2461 -1.2258 1.0976 6 6 3.7259 -1.9907 2.1511 7 6 4.9862 -2.5512 2.0781 8 6 5.7674 -2.3550 0.9541 9 6 5.2937 -1.5890 -0.0947 10 6 6.1498 -1.3728 -1.3160 11 7 6.9648 -0.1691 -1.1342 12 6 6.4524 1.1343 -1.5640 13 6 8.1862 -0.2609 -0.5715 14 8 8.6102 -1.3399 -0.2154 15 6 9.0220 0.9781 -0.3788 16 1 8.3827 1.8020 -0.0614 17 7 10.0419 0.7261 0.6479 18 6 9.7058 1.3423 -1.6981 19 6 10.4534 2.6674 -1.5364 20 6 11.1274 3.0258 -2.8357 21 1 11.0318 2.3739 -3.6915 22 6 11.8654 4.1864 -2.9324 23 7 11.9815 4.9805 -1.8904 24 14 12.7003 4.6311 -4.5432 25 1 12.4170 3.5806 -5.5540 26 1 12.1806 5.9355 -5.0264 27 1 14.1665 4.7307 -4.3298 28 6 4.0338 -1.0260 -0.0266 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8898 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.1146 -2.1476 3.0275 37 1 5.3600 -3.1470 2.8977 38 1 6.7509 -2.7978 0.8970 39 1 5.5108 -1.2502 -2.1905 40 1 6.8015 -2.2345 -1.4600 41 1 6.7424 1.3154 -2.5990 42 1 5.3653 1.1415 -1.4846 43 1 6.8684 1.9159 -0.9281 44 1 9.6155 0.5465 1.5447 45 1 10.6477 -0.0340 0.3770 46 1 10.4118 0.5577 -1.9703 47 1 8.9543 1.4425 -2.4814 48 1 9.7475 3.4521 -1.2643 49 1 11.2049 2.5672 -0.7533 50 1 12.5010 5.7969 -1.9583 51 1 3.6625 -0.4308 -0.8478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:45 Heat of formation + Delta-G solvation = -81.167899 kcal Electronic energy + Delta-G solvation = -29153.468163 eV Core-core repulsion = 25244.753730 eV Total energy + Delta-G solvation = -3908.714433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59139 -40.98026 -38.86388 -36.88336 -36.68551 -34.83040 -34.19911 -32.64201 -31.92036 -30.89517 -28.75801 -28.17116 -28.00728 -26.94321 -24.92059 -24.24777 -22.73769 -21.94448 -21.73756 -20.24047 -18.96561 -18.55568 -18.18790 -17.35404 -17.12923 -16.92559 -16.81903 -16.43044 -16.40315 -16.14018 -15.43839 -15.33061 -15.02015 -14.74379 -14.39994 -14.30541 -14.17138 -13.94907 -13.67722 -13.64109 -13.50231 -13.39690 -13.25445 -13.12244 -12.82090 -12.77953 -12.71209 -12.48346 -12.45833 -12.19978 -12.10681 -11.78069 -11.72134 -11.58454 -11.56705 -11.20657 -10.96629 -10.48660 -10.00304 -9.73557 -9.58227 -9.15934 -8.12964 -6.23009 0.22937 0.43438 1.41858 1.43087 1.51329 1.55599 2.03023 2.23201 2.45236 2.82146 3.20208 3.47626 3.64194 3.67287 3.83179 3.85614 3.98768 4.01656 4.03764 4.16708 4.23633 4.25240 4.34127 4.36245 4.48218 4.55711 4.60863 4.70002 4.71851 4.79302 4.81303 4.87299 4.88550 4.93590 4.98687 4.99948 5.18946 5.25669 5.26969 5.32601 5.43919 5.45146 5.58529 5.61007 5.79382 5.85295 5.99649 6.07433 6.29333 6.31943 6.47836 6.49620 6.95784 7.06929 7.45143 8.98488 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.002463 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.937387 B =11364.800749 C =12470.747510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.180 4.180 4 O -0.325 6.325 5 C 0.120 3.880 6 C -0.161 4.161 7 C -0.085 4.085 8 C -0.152 4.152 9 C -0.071 4.071 10 C 0.150 3.850 11 N -0.603 5.603 12 C 0.068 3.932 13 C 0.487 3.513 14 O -0.574 6.574 15 C 0.085 3.915 16 H 0.105 0.895 17 N -0.819 5.819 18 C -0.079 4.079 19 C 0.041 3.959 20 C -0.540 4.540 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.282 1.282 28 C -0.193 4.193 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.344 0.656 45 H 0.345 0.655 46 H 0.040 0.960 47 H 0.069 0.931 48 H -0.006 1.006 49 H 0.003 0.997 50 H 0.262 0.738 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.419 -12.223 3.371 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.237 4.237 4 O -0.240 6.240 5 C 0.074 3.926 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.171 4.171 9 C -0.072 4.072 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.074 4.074 13 C 0.274 3.726 14 O -0.454 6.454 15 C -0.031 4.031 16 H 0.123 0.877 17 N -0.348 5.348 18 C -0.118 4.118 19 C 0.004 3.996 20 C -0.578 4.578 21 H 0.074 0.926 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.784 3.216 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.208 1.208 28 C -0.211 4.211 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.159 0.841 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.013 0.987 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.018 -11.854 3.589 27.916 hybrid contribution 0.457 -0.466 -0.492 0.817 sum -24.562 -12.319 3.097 27.652 Atomic orbital electron populations 1.21881 0.91186 1.03283 1.03969 1.22711 0.96412 0.92812 0.86782 1.22393 1.01694 0.95618 1.03979 1.86118 1.29086 1.68384 1.40372 1.19105 0.85089 0.93641 0.94717 1.20675 0.97302 1.00832 0.99197 1.21170 0.92971 0.98258 0.97906 1.21153 1.00181 1.01171 0.94568 1.20069 0.94170 0.96397 0.96580 1.20467 0.92987 0.88342 0.95399 1.48002 1.15785 1.09327 1.60319 1.22130 1.01217 0.82928 1.01146 1.22344 0.82080 0.92002 0.76134 1.90606 1.72410 1.30553 1.51821 1.21666 0.92374 0.93893 0.95141 0.87686 1.59003 1.20920 1.50206 1.04622 1.21363 0.98479 0.98473 0.93439 1.18810 0.94397 0.91134 0.95285 1.21739 1.31232 1.06271 0.98533 0.92623 1.25900 0.97310 0.96541 0.99902 1.70117 1.41976 1.13477 1.31505 0.85493 0.78053 0.78289 0.79756 1.18765 1.20240 1.20823 1.21265 0.95102 1.05402 0.99381 0.91813 0.88419 0.91869 0.90104 0.92038 0.92660 0.88877 0.84284 0.83786 0.86926 0.86880 0.90424 0.91107 0.88659 0.90848 0.84288 0.84145 0.94112 0.91288 0.98735 0.97828 0.92963 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 71.98 0.69 -0.65 16 2 C 0.07 0.86 2.84 30.59 0.09 0.95 16 3 C -0.18 -2.08 9.17 71.98 0.66 -1.42 16 4 O -0.32 -6.15 9.80 -92.45 -0.91 -7.05 16 5 C 0.12 2.43 6.60 22.51 0.15 2.58 16 6 C -0.16 -3.24 9.99 22.37 0.22 -3.02 16 7 C -0.09 -1.75 10.04 22.25 0.22 -1.52 16 8 C -0.15 -3.60 9.70 22.28 0.22 -3.39 16 9 C -0.07 -1.53 5.46 -19.88 -0.11 -1.64 16 10 C 0.15 3.17 5.53 85.64 0.47 3.64 16 11 N -0.60 -14.66 2.86 -851.11 -2.43 -17.09 16 12 C 0.07 1.31 9.57 127.77 1.22 2.54 16 13 C 0.49 15.22 6.91 87.66 0.61 15.83 16 14 O -0.57 -20.62 15.38 -3.03 -0.05 -20.67 16 15 C 0.08 2.87 2.42 44.17 0.11 2.98 16 16 H 0.11 3.39 6.30 -2.38 -0.02 3.38 16 17 N -0.82 -28.54 8.44 -171.81 -1.45 -29.99 16 18 C -0.08 -3.19 4.71 30.59 0.14 -3.04 16 19 C 0.04 2.12 4.86 29.85 0.15 2.26 16 20 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 21 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 22 C 0.00 0.06 5.46 84.65 0.46 0.53 16 23 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 24 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 28 C -0.19 -3.59 7.90 22.37 0.18 -3.42 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.88 6.30 -2.39 -0.02 0.87 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.75 6.92 -2.39 -0.02 0.73 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.11 3.01 7.60 -2.91 -0.02 2.99 16 39 H 0.11 1.68 8.01 -2.39 -0.02 1.66 16 40 H 0.08 1.90 7.36 -2.39 -0.02 1.88 16 41 H 0.07 1.34 7.67 -2.39 -0.02 1.32 16 42 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 43 H 0.07 1.56 5.94 -2.38 -0.01 1.55 16 44 H 0.34 10.53 9.06 -89.69 -0.81 9.72 16 45 H 0.34 12.23 8.58 -89.70 -0.77 11.46 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 2.54 6.96 -2.38 -0.02 2.52 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.00 0.19 7.75 -2.39 -0.02 0.17 16 50 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.15 2.05 5.43 -2.91 -0.02 2.04 16 Total: -1.00 -71.17 411.59 2.54 -68.63 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.65 Total: 33.22 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.71 Total: -16.97 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.60 Total: -103.37 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.95 Total: -27.72 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.17 2.54 -68.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.540 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds