Wall clock time and date at job start Tue Mar 31 2020 19:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 O 1.42901 * 109.47318 * 120.00132 * 2 1 3 5 5 C 1.35900 * 116.99695 * 155.20381 * 4 2 1 6 6 C 1.38747 * 120.05958 * 5.20374 * 5 4 2 7 7 C 1.38132 * 119.94249 * 179.74270 * 6 5 4 8 8 C 1.38285 * 120.05730 * 0.50468 * 7 6 5 9 9 C 1.38244 * 120.10932 * 359.76997 * 8 7 6 10 10 C 1.50700 * 119.97142 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47013 * 270.02157 * 10 9 8 12 12 C 1.46505 * 120.00017 * 90.00025 * 11 10 9 13 13 C 1.34776 * 120.00266 * 269.99888 * 11 10 9 14 14 O 1.21290 * 119.99502 * 0.02562 * 13 11 10 15 15 C 1.50700 * 120.00281 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.47097 * 320.00167 * 15 13 11 17 17 N 1.46899 * 109.46983 * 200.00066 * 15 13 11 18 18 C 1.52994 * 109.46957 * 80.00174 * 15 13 11 19 19 C 1.53004 * 109.47001 * 184.99909 * 18 15 13 20 20 C 1.50697 * 109.47103 * 179.97438 * 19 18 15 21 21 H 1.08001 * 120.00163 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99857 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47214 * 59.99837 * 24 22 20 26 26 H 1.48502 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46884 * 299.99486 * 24 22 20 28 28 C 1.38164 * 120.05727 * 359.97438 * 9 8 7 29 29 H 1.08997 * 109.47314 * 299.99693 * 1 2 3 30 30 H 1.09003 * 109.46941 * 60.00344 * 1 2 3 31 31 H 1.09006 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47014 * 240.00523 * 2 1 3 33 33 H 1.09000 * 109.46682 * 300.00476 * 3 2 1 34 34 H 1.08997 * 109.46677 * 59.99917 * 3 2 1 35 35 H 1.08992 * 109.47387 * 179.97438 * 3 2 1 36 36 H 1.07998 * 120.03196 * 359.96964 * 6 5 4 37 37 H 1.08005 * 119.96819 * 180.25317 * 7 6 5 38 38 H 1.07998 * 119.94458 * 179.74550 * 8 7 6 39 39 H 1.09002 * 109.47281 * 30.01956 * 10 9 8 40 40 H 1.09003 * 109.47045 * 150.02319 * 10 9 8 41 41 H 1.09003 * 109.46674 * 89.99872 * 12 11 10 42 42 H 1.08995 * 109.46852 * 209.99913 * 12 11 10 43 43 H 1.09001 * 109.46925 * 330.00071 * 12 11 10 44 44 H 1.00896 * 111.00227 * 299.99833 * 17 15 13 45 45 H 1.00900 * 111.00385 * 63.95178 * 17 15 13 46 46 H 1.09001 * 109.47538 * 304.99555 * 18 15 13 47 47 H 1.09003 * 109.47493 * 65.00075 * 18 15 13 48 48 H 1.08998 * 109.47404 * 300.00249 * 19 18 15 49 49 H 1.09003 * 109.46861 * 59.99779 * 19 18 15 50 50 H 0.96996 * 119.99821 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.03094 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2484 -1.2210 1.0992 6 6 4.0361 -1.0204 -0.0253 7 6 5.3002 -1.5735 -0.0892 8 6 5.7769 -2.3353 0.9618 9 6 4.9918 -2.5414 2.0809 10 6 5.5142 -3.3725 3.2243 11 7 5.1524 -4.7763 3.0128 12 6 6.0570 -5.6630 2.2767 13 6 3.9873 -5.2520 3.4953 14 8 3.2382 -4.5178 4.1042 15 6 3.6154 -6.6962 3.2781 16 1 3.8988 -6.9967 2.2695 17 7 2.1654 -6.8593 3.4484 18 6 4.3500 -7.5706 4.2962 19 6 4.0707 -9.0450 3.9978 20 6 4.7948 -9.9063 5.0002 21 1 5.3939 -9.4480 5.7731 22 6 4.6925 -11.2796 4.9305 23 7 3.9625 -11.8377 3.9896 24 14 5.5894 -12.3472 6.1735 25 1 5.1130 -12.0209 7.5416 26 1 5.3185 -13.7783 5.8838 27 1 7.0495 -12.0913 6.0836 28 6 3.7287 -1.9860 2.1520 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.6626 -0.4293 -0.8484 37 1 5.9153 -1.4142 -0.9626 38 1 6.7639 -2.7702 0.9082 39 1 6.5992 -3.2806 3.2744 40 1 5.0762 -3.0213 4.1586 41 1 6.7488 -6.1359 2.9737 42 1 5.4764 -6.4300 1.7642 43 1 6.6186 -5.0826 1.5447 44 1 1.8774 -6.5870 4.3763 45 1 1.6583 -6.3419 2.7461 46 1 5.4217 -7.3832 4.2299 47 1 4.0006 -7.3307 5.3005 48 1 2.9990 -9.2325 4.0640 49 1 4.4201 -9.2849 2.9935 50 1 3.8902 -12.8038 3.9409 51 1 3.1160 -2.1469 3.0266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424164324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:49 Heat of formation + Delta-G solvation = -60.453816 kcal Electronic energy + Delta-G solvation = -28896.200598 eV Core-core repulsion = 24988.384395 eV Total energy + Delta-G solvation = -3907.816203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64943 -39.90525 -38.08270 -35.57990 -35.21309 -33.57402 -32.79741 -31.86294 -30.07698 -29.96667 -27.93103 -27.44148 -26.72389 -25.46763 -23.52341 -22.86356 -22.49441 -20.72572 -20.19439 -19.00178 -18.22204 -17.11134 -16.39114 -16.38093 -16.08637 -15.98444 -15.72825 -15.50606 -15.11467 -14.46377 -14.40731 -14.24552 -13.98330 -13.72000 -13.31936 -13.18799 -13.07430 -12.92981 -12.74274 -12.63392 -12.39082 -12.23332 -12.12332 -12.08507 -11.88594 -11.66388 -11.52156 -11.40080 -11.06894 -10.89387 -10.85766 -10.63255 -10.52284 -10.05304 -9.75149 -9.34113 -9.11254 -8.98511 -8.65589 -8.38337 -8.30003 -8.14879 -5.92034 -3.94119 1.05636 1.27367 2.79732 2.91947 3.09944 3.37055 3.41664 3.44092 3.68740 4.34854 4.47698 4.51002 4.54760 4.60528 4.67039 4.72276 4.86339 4.98275 5.06702 5.09590 5.11227 5.16198 5.23201 5.29224 5.34498 5.39185 5.40255 5.43479 5.49236 5.61602 5.68635 5.71146 5.74632 5.82673 5.87135 5.92125 6.14154 6.21525 6.40496 6.45589 6.49414 6.59214 6.69995 7.10782 7.25377 7.35985 7.55631 7.77767 7.84100 7.98324 8.15519 8.32141 8.50464 9.13721 9.68777 11.18796 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002209 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.259187 B =12672.091279 C =13375.608598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.180 4.180 4 O -0.310 6.310 5 C 0.129 3.871 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.146 4.146 9 C -0.064 4.064 10 C 0.151 3.849 11 N -0.611 5.611 12 C 0.074 3.926 13 C 0.485 3.515 14 O -0.549 6.549 15 C 0.078 3.922 16 H 0.098 0.902 17 N -0.807 5.807 18 C -0.095 4.095 19 C 0.032 3.968 20 C -0.522 4.522 21 H 0.051 0.949 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.128 4.128 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.347 0.653 45 H 0.333 0.667 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.012 0.988 50 H 0.260 0.740 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 26.256 -11.883 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.237 4.237 4 O -0.224 6.224 5 C 0.084 3.916 6 C -0.229 4.229 7 C -0.103 4.103 8 C -0.165 4.165 9 C -0.065 4.065 10 C 0.028 3.972 11 N -0.344 5.344 12 C -0.068 4.068 13 C 0.273 3.727 14 O -0.427 6.427 15 C -0.037 4.037 16 H 0.116 0.884 17 N -0.335 5.335 18 C -0.133 4.133 19 C -0.005 4.005 20 C -0.560 4.560 21 H 0.069 0.931 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.148 4.148 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.161 0.839 45 H 0.145 0.855 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.030 0.970 50 H 0.069 0.931 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.498 25.658 -11.584 28.156 hybrid contribution 0.696 0.533 0.419 0.972 sum 1.194 26.191 -11.165 28.496 Atomic orbital electron populations 1.21858 0.92375 1.03402 1.03023 1.22434 0.95541 0.92534 0.87479 1.22388 1.02136 0.96055 1.03156 1.86158 1.29296 1.68256 1.38660 1.18995 0.84627 0.93549 0.94474 1.21269 0.96444 1.06510 0.98719 1.20884 0.94876 0.96247 0.98265 1.20948 1.00387 1.01261 0.93867 1.20062 0.93596 0.96550 0.96305 1.20334 0.99965 0.80558 0.96328 1.48006 1.20809 1.09391 1.56215 1.21945 0.94214 0.94235 0.96440 1.22763 0.80174 0.92411 0.77382 1.90624 1.50488 1.60076 1.41498 1.21880 0.90702 0.88303 1.02860 0.88440 1.59024 1.02366 1.63020 1.09088 1.21653 0.97362 0.98364 0.95951 1.19001 0.98313 0.86913 0.96236 1.21241 1.29645 0.91283 1.13861 0.93063 1.24994 0.95536 0.98154 0.95663 1.69964 1.39769 1.10476 1.32973 0.86714 0.80148 0.79459 0.81967 1.20339 1.21365 1.20379 1.20492 0.96302 0.98896 0.99074 0.91382 0.90538 0.91478 0.90977 0.91035 0.91369 0.91850 0.85557 0.85886 0.85972 0.89535 0.89011 0.91662 0.90176 0.91407 0.83880 0.85534 0.92730 0.92929 0.94726 0.96954 0.93065 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 2 C 0.08 0.62 2.85 -26.73 -0.08 0.55 16 3 C -0.18 -1.19 9.17 37.16 0.34 -0.84 16 4 O -0.31 -3.68 9.80 -19.43 -0.19 -3.87 16 5 C 0.13 1.56 6.60 -39.22 -0.26 1.30 16 6 C -0.21 -2.10 8.24 -39.43 -0.32 -2.42 16 7 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 8 C -0.15 -1.43 9.70 -39.56 -0.38 -1.82 16 9 C -0.06 -0.74 5.46 -104.65 -0.57 -1.32 16 10 C 0.15 1.75 5.53 -5.19 -0.03 1.72 16 11 N -0.61 -8.08 2.86 -182.95 -0.52 -8.60 16 12 C 0.07 0.82 9.57 59.85 0.57 1.39 16 13 C 0.49 7.90 6.91 -10.99 -0.08 7.83 16 14 O -0.55 -10.17 15.36 5.55 0.09 -10.09 16 15 C 0.08 1.35 2.42 -68.87 -0.17 1.18 16 16 H 0.10 1.61 6.31 -51.93 -0.33 1.29 16 17 N -0.81 -14.16 8.44 -5.66 -0.05 -14.20 16 18 C -0.09 -1.93 4.71 -26.73 -0.13 -2.06 16 19 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 20 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 21 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 24 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.13 -1.70 9.64 -39.43 -0.38 -2.08 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 6.31 -51.92 -0.33 0.21 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.44 6.91 -51.93 -0.36 0.08 16 36 H 0.13 1.00 5.43 -52.49 -0.29 0.71 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.09 0.78 8.02 -51.93 -0.42 0.36 16 40 H 0.09 1.19 7.36 -51.93 -0.38 0.81 16 41 H 0.06 0.71 7.65 -51.93 -0.40 0.32 16 42 H 0.08 0.93 5.94 -51.93 -0.31 0.62 16 43 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 44 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 45 H 0.33 5.20 9.06 -39.29 -0.36 4.84 16 46 H 0.05 1.04 6.94 -51.93 -0.36 0.68 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.14 2.03 7.58 -52.49 -0.40 1.63 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -33.38 411.50 -9.25 -42.63 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -8.42 Total: 8.59 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.07 Total: -11.21 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.17 Total: -49.00 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.38 -9.25 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.825 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds