Wall clock time and date at job start Tue Mar 31 2020 19:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 O 1.42901 * 109.47318 * 120.00132 * 2 1 3 5 5 C 1.35900 * 116.99695 * 155.20381 * 4 2 1 6 6 C 1.38747 * 120.05958 * 5.20374 * 5 4 2 7 7 C 1.38132 * 119.94249 * 179.74270 * 6 5 4 8 8 C 1.38285 * 120.05730 * 0.50468 * 7 6 5 9 9 C 1.38244 * 120.10932 * 359.76997 * 8 7 6 10 10 C 1.50700 * 119.97142 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47013 * 270.02157 * 10 9 8 12 12 C 1.46505 * 120.00017 * 90.00025 * 11 10 9 13 13 C 1.34776 * 120.00266 * 269.99888 * 11 10 9 14 14 O 1.21290 * 119.99502 * 0.02562 * 13 11 10 15 15 C 1.50700 * 120.00281 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.47097 * 320.00167 * 15 13 11 17 17 N 1.46899 * 109.46983 * 200.00066 * 15 13 11 18 18 C 1.52994 * 109.46957 * 80.00174 * 15 13 11 19 19 C 1.53004 * 109.47001 * 184.99909 * 18 15 13 20 20 C 1.50697 * 109.47103 * 179.97438 * 19 18 15 21 21 H 1.08001 * 120.00163 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99857 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47214 * 59.99837 * 24 22 20 26 26 H 1.48502 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46884 * 299.99486 * 24 22 20 28 28 C 1.38164 * 120.05727 * 359.97438 * 9 8 7 29 29 H 1.08997 * 109.47314 * 299.99693 * 1 2 3 30 30 H 1.09003 * 109.46941 * 60.00344 * 1 2 3 31 31 H 1.09006 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47014 * 240.00523 * 2 1 3 33 33 H 1.09000 * 109.46682 * 300.00476 * 3 2 1 34 34 H 1.08997 * 109.46677 * 59.99917 * 3 2 1 35 35 H 1.08992 * 109.47387 * 179.97438 * 3 2 1 36 36 H 1.07998 * 120.03196 * 359.96964 * 6 5 4 37 37 H 1.08005 * 119.96819 * 180.25317 * 7 6 5 38 38 H 1.07998 * 119.94458 * 179.74550 * 8 7 6 39 39 H 1.09002 * 109.47281 * 30.01956 * 10 9 8 40 40 H 1.09003 * 109.47045 * 150.02319 * 10 9 8 41 41 H 1.09003 * 109.46674 * 89.99872 * 12 11 10 42 42 H 1.08995 * 109.46852 * 209.99913 * 12 11 10 43 43 H 1.09001 * 109.46925 * 330.00071 * 12 11 10 44 44 H 1.00896 * 111.00227 * 299.99833 * 17 15 13 45 45 H 1.00900 * 111.00385 * 63.95178 * 17 15 13 46 46 H 1.09001 * 109.47538 * 304.99555 * 18 15 13 47 47 H 1.09003 * 109.47493 * 65.00075 * 18 15 13 48 48 H 1.08998 * 109.47404 * 300.00249 * 19 18 15 49 49 H 1.09003 * 109.46861 * 59.99779 * 19 18 15 50 50 H 0.96996 * 119.99821 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.03094 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2484 -1.2210 1.0992 6 6 4.0361 -1.0204 -0.0253 7 6 5.3002 -1.5735 -0.0892 8 6 5.7769 -2.3353 0.9618 9 6 4.9918 -2.5414 2.0809 10 6 5.5142 -3.3725 3.2243 11 7 5.1524 -4.7763 3.0128 12 6 6.0570 -5.6630 2.2767 13 6 3.9873 -5.2520 3.4953 14 8 3.2382 -4.5178 4.1042 15 6 3.6154 -6.6962 3.2781 16 1 3.8988 -6.9967 2.2695 17 7 2.1654 -6.8593 3.4484 18 6 4.3500 -7.5706 4.2962 19 6 4.0707 -9.0450 3.9978 20 6 4.7948 -9.9063 5.0002 21 1 5.3939 -9.4480 5.7731 22 6 4.6925 -11.2796 4.9305 23 7 3.9625 -11.8377 3.9896 24 14 5.5894 -12.3472 6.1735 25 1 5.1130 -12.0209 7.5416 26 1 5.3185 -13.7783 5.8838 27 1 7.0495 -12.0913 6.0836 28 6 3.7287 -1.9860 2.1520 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.6626 -0.4293 -0.8484 37 1 5.9153 -1.4142 -0.9626 38 1 6.7639 -2.7702 0.9082 39 1 6.5992 -3.2806 3.2744 40 1 5.0762 -3.0213 4.1586 41 1 6.7488 -6.1359 2.9737 42 1 5.4764 -6.4300 1.7642 43 1 6.6186 -5.0826 1.5447 44 1 1.8774 -6.5870 4.3763 45 1 1.6583 -6.3419 2.7461 46 1 5.4217 -7.3832 4.2299 47 1 4.0006 -7.3307 5.3005 48 1 2.9990 -9.2325 4.0640 49 1 4.4201 -9.2849 2.9935 50 1 3.8902 -12.8038 3.9409 51 1 3.1160 -2.1469 3.0266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:48 Heat of formation + Delta-G solvation = -81.559392 kcal Electronic energy + Delta-G solvation = -28897.115804 eV Core-core repulsion = 24988.384395 eV Total energy + Delta-G solvation = -3908.731409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55934 -41.00746 -38.93145 -36.86048 -36.62162 -34.82419 -34.21158 -32.74424 -31.92489 -30.78456 -28.84718 -28.19042 -27.99989 -26.91087 -24.96502 -23.72500 -23.40245 -22.17938 -21.27429 -20.20865 -19.07880 -18.51574 -18.13964 -17.35005 -17.14332 -16.99258 -16.78266 -16.47845 -16.39611 -16.20484 -15.41637 -15.25117 -15.00097 -14.72641 -14.48570 -14.30652 -14.13571 -13.93377 -13.70425 -13.67152 -13.48325 -13.42118 -13.18343 -13.10284 -12.87060 -12.77465 -12.74948 -12.50537 -12.40528 -12.22578 -12.16536 -11.74418 -11.72650 -11.59327 -11.57407 -11.22324 -10.98257 -10.47326 -9.99228 -9.71659 -9.58451 -9.16519 -8.12191 -6.22469 0.23138 0.46865 1.42582 1.45671 1.51180 1.53728 2.03482 2.23055 2.45779 2.84067 3.20577 3.48157 3.67072 3.74184 3.76536 3.87583 3.97338 4.01881 4.03439 4.08406 4.22830 4.26055 4.35465 4.37480 4.44142 4.60614 4.64510 4.66207 4.73904 4.76776 4.80534 4.81953 4.88930 4.90029 5.02306 5.04922 5.14436 5.21104 5.25825 5.35247 5.44984 5.47441 5.58299 5.59412 5.83346 5.85264 5.99582 6.06125 6.30230 6.32169 6.46630 6.49072 6.95641 7.07980 7.45368 8.98786 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002209 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.259187 B =12672.091279 C =13375.608598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 C -0.174 4.174 4 O -0.337 6.337 5 C 0.113 3.887 6 C -0.209 4.209 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.072 4.072 10 C 0.151 3.849 11 N -0.603 5.603 12 C 0.067 3.933 13 C 0.485 3.515 14 O -0.578 6.578 15 C 0.085 3.915 16 H 0.107 0.893 17 N -0.819 5.819 18 C -0.079 4.079 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.929 5.929 24 Si 0.960 3.040 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.264 1.264 28 C -0.158 4.158 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.344 0.656 45 H 0.343 0.657 46 H 0.070 0.930 47 H 0.039 0.961 48 H 0.002 0.998 49 H -0.005 1.005 50 H 0.262 0.738 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 27.342 -13.459 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 C -0.232 4.232 4 O -0.252 6.252 5 C 0.068 3.932 6 C -0.228 4.228 7 C -0.098 4.098 8 C -0.161 4.161 9 C -0.073 4.073 10 C 0.029 3.971 11 N -0.334 5.334 12 C -0.075 4.075 13 C 0.272 3.728 14 O -0.458 6.458 15 C -0.030 4.030 16 H 0.125 0.875 17 N -0.347 5.347 18 C -0.118 4.118 19 C 0.005 3.995 20 C -0.581 4.581 21 H 0.074 0.926 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.784 3.216 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.189 1.189 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.021 0.979 49 H 0.013 0.987 50 H 0.070 0.930 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.983 26.767 -13.179 29.985 hybrid contribution -0.091 0.249 0.840 0.880 sum 2.892 27.016 -12.340 29.841 Atomic orbital electron populations 1.21901 0.91667 1.02949 1.04040 1.22742 0.96203 0.93264 0.86665 1.22355 1.01867 0.94998 1.03947 1.86133 1.29552 1.68754 1.40721 1.19152 0.85154 0.93848 0.95023 1.21547 0.96603 1.06322 0.98307 1.21326 0.94625 0.94838 0.99022 1.21265 1.01164 1.00818 0.92885 1.20070 0.93274 0.96811 0.97129 1.20472 1.01753 0.79310 0.95604 1.48024 1.19793 1.10467 1.55143 1.22165 0.93884 0.94378 0.97044 1.22391 0.81121 0.91645 0.77650 1.90622 1.51717 1.60492 1.42992 1.21674 0.90250 0.88842 1.02268 0.87492 1.59016 1.02893 1.63538 1.09284 1.21369 0.98700 0.95619 0.96069 1.18799 0.95851 0.90042 0.94833 1.21685 1.29838 0.92129 1.14409 0.92606 1.25910 0.96348 0.99744 0.97666 1.70100 1.41177 1.10871 1.34820 0.85590 0.79379 0.77359 0.79224 1.19770 1.20995 1.18892 1.20429 0.97260 1.01179 0.98893 0.92009 0.87839 0.92663 0.90097 0.88556 0.92227 0.92171 0.83480 0.82545 0.83046 0.86024 0.91219 0.91217 0.90930 0.87917 0.84253 0.84422 0.91141 0.94252 0.97915 0.98662 0.92951 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.56 71.98 0.69 -1.28 16 2 C 0.07 1.05 2.85 30.60 0.09 1.14 16 3 C -0.17 -2.07 9.17 71.98 0.66 -1.41 16 4 O -0.34 -8.32 9.80 -92.42 -0.91 -9.22 16 5 C 0.11 2.77 6.60 22.51 0.15 2.92 16 6 C -0.21 -3.76 8.24 22.37 0.18 -3.58 16 7 C -0.08 -1.20 10.04 22.26 0.22 -0.98 16 8 C -0.14 -2.35 9.70 22.28 0.22 -2.13 16 9 C -0.07 -1.60 5.46 -19.88 -0.11 -1.71 16 10 C 0.15 3.34 5.53 85.63 0.47 3.81 16 11 N -0.60 -15.29 2.86 -851.11 -2.43 -17.72 16 12 C 0.07 1.31 9.57 127.77 1.22 2.53 16 13 C 0.48 15.99 6.91 87.66 0.61 16.60 16 14 O -0.58 -22.36 15.36 -3.06 -0.05 -22.41 16 15 C 0.09 2.99 2.42 44.17 0.11 3.10 16 16 H 0.11 3.54 6.31 -2.39 -0.02 3.53 16 17 N -0.82 -29.83 8.44 -171.82 -1.45 -31.28 16 18 C -0.08 -3.27 4.71 30.59 0.14 -3.12 16 19 C 0.04 2.20 4.86 29.85 0.15 2.35 16 20 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 21 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 22 C 0.00 0.07 5.46 84.66 0.46 0.53 16 23 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 24 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 28 C -0.16 -4.38 9.64 22.37 0.22 -4.16 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.10 6.31 -2.38 -0.02 1.08 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.75 6.91 -2.39 -0.02 0.73 16 36 H 0.15 1.93 5.43 -2.91 -0.02 1.92 16 37 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.12 1.81 8.02 -2.39 -0.02 1.79 16 40 H 0.07 1.86 7.36 -2.39 -0.02 1.85 16 41 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 42 H 0.07 1.56 5.94 -2.39 -0.01 1.54 16 43 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 44 H 0.34 12.83 8.58 -89.70 -0.77 12.06 16 45 H 0.34 11.13 9.06 -89.69 -0.81 10.32 16 46 H 0.07 2.65 6.94 -2.39 -0.02 2.63 16 47 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 49 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.10 3.41 7.58 -2.91 -0.02 3.39 16 Total: -1.00 -75.02 411.50 2.54 -72.48 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.65 Total: 34.27 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.71 Total: -16.06 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.60 Total: -105.60 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.95 Total: -31.63 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -75.02 2.54 -72.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds