Wall clock time and date at job start Tue Mar 31 2020 19:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 O 1.42898 * 109.46645 * 179.97438 * 3 2 1 5 5 C 1.35910 * 116.99972 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05126 * 0.02562 * 5 4 3 7 7 C 1.38124 * 119.94310 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.05408 * 0.03123 * 7 6 5 9 9 C 1.50696 * 119.94401 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46873 * 259.99610 * 9 8 7 11 11 C 1.34770 * 120.00284 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00293 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47060 * 40.00174 * 13 11 10 15 15 N 1.46896 * 109.47239 * 160.00327 * 13 11 10 16 16 C 1.52997 * 109.47212 * 280.00118 * 13 11 10 17 17 C 1.52994 * 109.47404 * 174.99684 * 16 13 11 18 18 C 1.50698 * 109.47502 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00426 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00640 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47190 * 89.99630 * 22 20 18 24 24 H 1.48502 * 109.47178 * 210.00167 * 22 20 18 25 25 H 1.48498 * 109.46759 * 329.99747 * 22 20 18 26 26 C 1.38250 * 120.11372 * 0.24272 * 8 7 6 27 27 C 1.50702 * 119.97416 * 179.70658 * 26 8 7 28 28 C 1.38171 * 120.05058 * 359.45787 * 26 8 7 29 29 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00099 * 1 2 3 31 31 H 1.09001 * 109.46928 * 60.00019 * 1 2 3 32 32 H 1.09002 * 109.47214 * 239.99901 * 2 1 3 33 33 H 1.08995 * 109.46654 * 120.00304 * 2 1 3 34 34 H 1.09005 * 109.46933 * 60.00609 * 3 2 1 35 35 H 1.08995 * 109.47615 * 299.99716 * 3 2 1 36 36 H 1.08001 * 120.02693 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.97198 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47693 * 139.99655 * 9 8 7 39 39 H 1.09004 * 109.47243 * 19.98981 * 9 8 7 40 40 H 0.97004 * 120.00069 * 359.97438 * 10 9 8 41 41 H 1.00907 * 110.99811 * 296.04225 * 15 13 11 42 42 H 1.00900 * 111.00550 * 59.99964 * 15 13 11 43 43 H 1.09000 * 109.47325 * 294.99852 * 16 13 11 44 44 H 1.09008 * 109.47017 * 54.99761 * 16 13 11 45 45 H 1.09000 * 109.47476 * 300.00087 * 17 16 13 46 46 H 1.09008 * 109.46970 * 60.00049 * 17 16 13 47 47 H 0.96993 * 120.00296 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.46655 * 89.99870 * 27 26 8 49 49 H 1.08996 * 109.46733 * 210.00042 * 27 26 8 50 50 H 1.09002 * 109.46609 * 330.00249 * 27 26 8 51 51 H 1.07999 * 120.02340 * 180.24662 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6533 0.0012 6 6 3.3315 3.8177 0.0018 7 6 3.9610 5.0472 0.0019 8 6 5.3420 5.1182 0.0008 9 6 6.0262 6.4609 0.0003 10 7 6.4606 6.7871 -1.3603 11 6 7.0997 7.9484 -1.6035 12 8 7.3156 8.7234 -0.6958 13 6 7.5470 8.2837 -3.0030 14 1 6.7789 7.9774 -3.7132 15 7 7.7662 9.7320 -3.1133 16 6 8.8510 7.5456 -3.3122 17 6 9.2394 7.7861 -4.7724 18 6 10.5241 7.0596 -5.0768 19 1 11.0144 6.4835 -4.3059 20 6 11.0736 7.1303 -6.3393 21 7 12.1946 6.4959 -6.6051 22 14 10.2261 8.1273 -7.6724 23 1 10.7323 9.5230 -7.6441 24 1 10.5117 7.5238 -8.9989 25 1 8.7604 8.1274 -7.4339 26 6 6.0961 3.9594 -0.0055 27 6 7.6009 4.0405 -0.0134 28 6 5.4712 2.7272 0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6768 1.9563 -0.8899 36 1 2.2529 3.7628 0.0022 37 1 3.3741 5.9538 0.0027 38 1 6.8931 6.4272 0.6601 39 1 5.3310 7.2231 0.3522 40 1 6.2883 6.1671 -2.0862 41 1 6.9048 10.2395 -2.9769 42 1 8.4745 10.0410 -2.4645 43 1 9.6419 7.9164 -2.6601 44 1 8.7126 6.4775 -3.1443 45 1 8.4486 7.4153 -5.4245 46 1 9.3778 8.8542 -4.9403 47 1 12.5809 6.5454 -7.4934 48 1 7.9691 4.0580 1.0124 49 1 8.0087 3.1723 -0.5311 50 1 7.9131 4.9498 -0.5271 51 1 6.0607 1.8223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424164735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:37 Heat of formation + Delta-G solvation = -78.452743 kcal Electronic energy + Delta-G solvation = -28054.263225 eV Core-core repulsion = 24145.666530 eV Total energy + Delta-G solvation = -3908.596695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70760 -39.79425 -38.42140 -35.45833 -34.93573 -34.21263 -32.80232 -32.74190 -31.00932 -30.46518 -28.14916 -26.92059 -26.67732 -25.44145 -23.23397 -22.78404 -21.91011 -20.78871 -20.48352 -19.86330 -18.08257 -17.37816 -16.76357 -16.72810 -16.60158 -16.33324 -15.54754 -15.28518 -14.99740 -14.66188 -14.50953 -14.20510 -14.06181 -14.02595 -13.60837 -13.58178 -13.38546 -13.06629 -12.68699 -12.62332 -12.50241 -12.43725 -12.35313 -12.27403 -11.70604 -11.66201 -11.64145 -11.47958 -11.06280 -11.02343 -10.96892 -10.85798 -10.36042 -9.99014 -9.70157 -9.58229 -9.10695 -9.08692 -9.07497 -8.60997 -8.45895 -8.26483 -5.97979 -3.95404 0.99219 1.05143 2.73103 2.75986 3.15439 3.38691 3.45058 3.50626 3.62904 4.30715 4.35560 4.44317 4.51647 4.52649 4.55650 4.67498 4.80290 4.80478 4.89347 4.92863 5.01227 5.04882 5.12078 5.15081 5.36175 5.38613 5.43778 5.44463 5.47389 5.50545 5.53353 5.58123 5.65597 5.70530 5.75711 5.87598 6.03270 6.07499 6.30724 6.34133 6.40922 6.47331 6.49939 6.89597 7.07389 7.27177 7.40388 7.53542 7.60279 7.68277 7.88038 8.27203 8.59551 9.06776 9.65146 11.15468 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002188 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.105593 B =12792.261484 C =13865.061235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.316 6.316 5 C 0.141 3.859 6 C -0.218 4.218 7 C -0.056 4.056 8 C -0.148 4.148 9 C 0.165 3.835 10 N -0.725 5.725 11 C 0.483 3.517 12 O -0.553 6.553 13 C 0.075 3.925 14 H 0.097 0.903 15 N -0.811 5.811 16 C -0.087 4.087 17 C -0.004 4.004 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.265 1.265 26 C -0.021 4.021 27 C -0.126 4.126 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.404 0.596 41 H 0.335 0.665 42 H 0.350 0.650 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.012 0.988 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.226 -9.667 16.128 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.229 6.229 5 C 0.095 3.905 6 C -0.237 4.237 7 C -0.075 4.075 8 C -0.148 4.148 9 C 0.042 3.958 10 N -0.378 5.378 11 C 0.269 3.731 12 O -0.431 6.431 13 C -0.041 4.041 14 H 0.115 0.885 15 N -0.339 5.339 16 C -0.125 4.125 17 C -0.042 4.042 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.022 4.022 27 C -0.183 4.183 28 C -0.174 4.174 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.238 0.762 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.624 -9.468 15.887 30.002 hybrid contribution -1.068 0.246 -0.027 1.097 sum -24.693 -9.222 15.860 30.762 Atomic orbital electron populations 1.21695 0.94179 1.02637 1.02244 1.21492 0.96083 0.94770 1.03842 1.22894 0.78384 0.98931 1.01489 1.86061 1.21366 1.27069 1.88435 1.18999 0.92222 0.84048 0.95234 1.21178 0.99965 0.92250 1.10323 1.20840 0.93628 0.97165 0.95832 1.19662 0.93489 0.94355 1.07324 1.20055 0.98664 0.92233 0.84894 1.46286 1.59747 1.21535 1.10257 1.22639 0.76252 0.80679 0.93527 1.90656 1.56099 1.49426 1.46900 1.21860 1.01071 0.90994 0.90176 0.88478 1.59033 1.13428 1.01987 1.59471 1.21465 0.92291 0.97770 1.01005 1.19484 0.96503 0.97761 0.90446 1.21180 1.06472 1.30683 0.97501 0.91294 1.25018 0.94684 0.95292 0.98568 1.69922 1.19507 1.43515 1.21627 0.86734 0.80802 0.80516 0.80938 1.20306 1.21744 1.18910 1.19654 0.96337 0.91406 0.94757 1.20967 0.90176 1.04153 1.02986 1.20312 0.91258 0.98249 1.07555 0.91637 0.92369 0.92298 0.90694 0.90796 0.92024 0.91913 0.85511 0.85610 0.90676 0.91193 0.76151 0.85357 0.83612 0.92217 0.92175 0.96931 0.95252 0.92864 0.90563 0.90738 0.90297 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.66 6.30 -26.73 -0.17 -0.83 16 3 C 0.06 0.38 4.74 37.16 0.18 0.56 16 4 O -0.32 -3.06 10.14 -19.46 -0.20 -3.26 16 5 C 0.14 1.42 6.69 -39.22 -0.26 1.16 16 6 C -0.22 -1.95 9.04 -39.43 -0.36 -2.30 16 7 C -0.06 -0.51 9.66 -39.61 -0.38 -0.89 16 8 C -0.15 -1.48 5.25 -104.60 -0.55 -2.03 16 9 C 0.16 1.81 4.92 -5.19 -0.03 1.78 16 10 N -0.73 -8.68 4.86 -61.47 -0.30 -8.98 16 11 C 0.48 7.17 7.07 -10.99 -0.08 7.10 16 12 O -0.55 -9.74 16.25 5.55 0.09 -9.65 16 13 C 0.07 1.17 3.15 -68.87 -0.22 0.95 16 14 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 15 N -0.81 -12.67 8.44 -5.66 -0.05 -12.72 16 16 C -0.09 -1.66 4.78 -26.74 -0.13 -1.79 16 17 C 0.00 -0.11 3.93 -27.89 -0.11 -0.22 16 18 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 19 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 22 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 C -0.02 -0.21 5.88 -104.64 -0.62 -0.83 16 27 C -0.13 -1.24 9.26 36.01 0.33 -0.91 16 28 C -0.16 -1.60 9.64 -39.43 -0.38 -1.98 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 35 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 36 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 37 H 0.13 0.94 8.03 -52.49 -0.42 0.52 16 38 H 0.08 0.88 7.29 -51.93 -0.38 0.51 16 39 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 40 H 0.40 4.37 8.46 -40.82 -0.35 4.02 16 41 H 0.33 4.50 9.06 -39.29 -0.36 4.14 16 42 H 0.35 5.60 8.58 -39.29 -0.34 5.27 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 46 H 0.03 0.71 7.18 -51.92 -0.37 0.34 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 50 H 0.08 0.87 6.32 -51.93 -0.33 0.54 16 51 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -33.63 414.70 -9.61 -43.24 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.69 Total: 8.86 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.82 Total: -13.78 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.43 Total: -49.11 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.11 Total: -12.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.63 -9.61 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.208 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds