Wall clock time and date at job start Tue Mar 31 2020 19:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 O 1.42898 * 109.46645 * 179.97438 * 3 2 1 5 5 C 1.35910 * 116.99972 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05126 * 0.02562 * 5 4 3 7 7 C 1.38124 * 119.94310 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.05408 * 0.03123 * 7 6 5 9 9 C 1.50696 * 119.94401 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46873 * 259.99610 * 9 8 7 11 11 C 1.34770 * 120.00284 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00293 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47060 * 40.00174 * 13 11 10 15 15 N 1.46896 * 109.47239 * 160.00327 * 13 11 10 16 16 C 1.52997 * 109.47212 * 280.00118 * 13 11 10 17 17 C 1.52994 * 109.47404 * 174.99684 * 16 13 11 18 18 C 1.50698 * 109.47502 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00426 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00640 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47190 * 89.99630 * 22 20 18 24 24 H 1.48502 * 109.47178 * 210.00167 * 22 20 18 25 25 H 1.48498 * 109.46759 * 329.99747 * 22 20 18 26 26 C 1.38250 * 120.11372 * 0.24272 * 8 7 6 27 27 C 1.50702 * 119.97416 * 179.70658 * 26 8 7 28 28 C 1.38171 * 120.05058 * 359.45787 * 26 8 7 29 29 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00099 * 1 2 3 31 31 H 1.09001 * 109.46928 * 60.00019 * 1 2 3 32 32 H 1.09002 * 109.47214 * 239.99901 * 2 1 3 33 33 H 1.08995 * 109.46654 * 120.00304 * 2 1 3 34 34 H 1.09005 * 109.46933 * 60.00609 * 3 2 1 35 35 H 1.08995 * 109.47615 * 299.99716 * 3 2 1 36 36 H 1.08001 * 120.02693 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.97198 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47693 * 139.99655 * 9 8 7 39 39 H 1.09004 * 109.47243 * 19.98981 * 9 8 7 40 40 H 0.97004 * 120.00069 * 359.97438 * 10 9 8 41 41 H 1.00907 * 110.99811 * 296.04225 * 15 13 11 42 42 H 1.00900 * 111.00550 * 59.99964 * 15 13 11 43 43 H 1.09000 * 109.47325 * 294.99852 * 16 13 11 44 44 H 1.09008 * 109.47017 * 54.99761 * 16 13 11 45 45 H 1.09000 * 109.47476 * 300.00087 * 17 16 13 46 46 H 1.09008 * 109.46970 * 60.00049 * 17 16 13 47 47 H 0.96993 * 120.00296 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.46655 * 89.99870 * 27 26 8 49 49 H 1.08996 * 109.46733 * 210.00042 * 27 26 8 50 50 H 1.09002 * 109.46609 * 330.00249 * 27 26 8 51 51 H 1.07999 * 120.02340 * 180.24662 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6533 0.0012 6 6 3.3315 3.8177 0.0018 7 6 3.9610 5.0472 0.0019 8 6 5.3420 5.1182 0.0008 9 6 6.0262 6.4609 0.0003 10 7 6.4606 6.7871 -1.3603 11 6 7.0997 7.9484 -1.6035 12 8 7.3156 8.7234 -0.6958 13 6 7.5470 8.2837 -3.0030 14 1 6.7789 7.9774 -3.7132 15 7 7.7662 9.7320 -3.1133 16 6 8.8510 7.5456 -3.3122 17 6 9.2394 7.7861 -4.7724 18 6 10.5241 7.0596 -5.0768 19 1 11.0144 6.4835 -4.3059 20 6 11.0736 7.1303 -6.3393 21 7 12.1946 6.4959 -6.6051 22 14 10.2261 8.1273 -7.6724 23 1 10.7323 9.5230 -7.6441 24 1 10.5117 7.5238 -8.9989 25 1 8.7604 8.1274 -7.4339 26 6 6.0961 3.9594 -0.0055 27 6 7.6009 4.0405 -0.0134 28 6 5.4712 2.7272 0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6768 1.9563 -0.8899 36 1 2.2529 3.7628 0.0022 37 1 3.3741 5.9538 0.0027 38 1 6.8931 6.4272 0.6601 39 1 5.3310 7.2231 0.3522 40 1 6.2883 6.1671 -2.0862 41 1 6.9048 10.2395 -2.9769 42 1 8.4745 10.0410 -2.4645 43 1 9.6419 7.9164 -2.6601 44 1 8.7126 6.4775 -3.1443 45 1 8.4486 7.4153 -5.4245 46 1 9.3778 8.8542 -4.9403 47 1 12.5809 6.5454 -7.4934 48 1 7.9691 4.0580 1.0124 49 1 8.0087 3.1723 -0.5311 50 1 7.9131 4.9498 -0.5271 51 1 6.0607 1.8223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:36 Heat of formation + Delta-G solvation = -100.846420 kcal Electronic energy + Delta-G solvation = -28055.234287 eV Core-core repulsion = 24145.666530 eV Total energy + Delta-G solvation = -3909.567757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48981 -40.87313 -39.18189 -36.87424 -35.90546 -34.77845 -34.75905 -33.54111 -32.26644 -31.82866 -29.01849 -28.24005 -27.25420 -26.57686 -24.67663 -23.44926 -22.51283 -22.13199 -21.49152 -21.16456 -19.00580 -18.75408 -18.26183 -17.59022 -17.37517 -17.25746 -16.81272 -16.32139 -16.03426 -15.92010 -15.44485 -15.22074 -15.10858 -14.93576 -14.74842 -14.59733 -14.31191 -14.29164 -13.97040 -13.76298 -13.53186 -13.28719 -13.09762 -13.06029 -12.98913 -12.80951 -12.51782 -12.33761 -12.14424 -12.11022 -11.92983 -11.78371 -11.69425 -11.59744 -11.52347 -11.26796 -11.11607 -10.69878 -10.14252 -9.81105 -9.70295 -9.14441 -8.23626 -6.26557 0.23636 0.31947 1.42150 1.43165 1.53370 1.56031 2.15485 2.21377 2.42276 2.77954 3.12960 3.58888 3.64441 3.72026 3.85057 3.90220 3.93279 3.96909 4.09349 4.12746 4.23406 4.27875 4.30339 4.31892 4.52629 4.53711 4.59385 4.65540 4.71514 4.73425 4.77104 4.81809 4.87031 4.98364 5.10504 5.13122 5.16504 5.16824 5.28830 5.32290 5.34455 5.37134 5.52703 5.60685 5.67457 5.74296 5.74929 6.09349 6.34150 6.40818 6.46595 6.55624 6.82064 7.15157 7.37792 8.93137 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002188 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.105593 B =12792.261484 C =13865.061235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.332 6.332 5 C 0.132 3.868 6 C -0.217 4.217 7 C -0.054 4.054 8 C -0.153 4.153 9 C 0.169 3.831 10 N -0.711 5.711 11 C 0.488 3.512 12 O -0.582 6.582 13 C 0.084 3.916 14 H 0.118 0.882 15 N -0.819 5.819 16 C -0.079 4.079 17 C 0.002 3.998 18 C -0.530 4.530 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.955 5.955 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.242 1.242 26 C -0.027 4.027 27 C -0.124 4.124 28 C -0.170 4.170 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.411 0.589 41 H 0.349 0.651 42 H 0.346 0.654 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.439 -9.049 15.854 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.246 6.246 5 C 0.086 3.914 6 C -0.235 4.235 7 C -0.072 4.072 8 C -0.154 4.154 9 C 0.046 3.954 10 N -0.363 5.363 11 C 0.274 3.726 12 O -0.462 6.462 13 C -0.032 4.032 14 H 0.136 0.864 15 N -0.348 5.348 16 C -0.117 4.117 17 C -0.035 4.035 18 C -0.568 4.568 19 H 0.047 0.953 20 C -0.195 4.195 21 N -0.596 5.596 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.165 1.165 26 C -0.028 4.028 27 C -0.181 4.181 28 C -0.189 4.189 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.247 0.753 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.879 -8.876 15.624 32.333 hybrid contribution -0.049 -0.065 0.142 0.164 sum -26.928 -8.941 15.766 32.460 Atomic orbital electron populations 1.21684 0.92832 1.03185 1.02733 1.21506 0.97153 0.94028 1.03373 1.23133 0.76880 0.99890 1.02386 1.86050 1.23089 1.27120 1.88358 1.19166 0.92324 0.84715 0.95155 1.21419 1.01081 0.91639 1.09392 1.21069 0.93255 0.98065 0.94827 1.19590 0.94007 0.93529 1.08275 1.20044 0.98442 0.92990 0.83882 1.46194 1.58427 1.20541 1.11122 1.22365 0.76395 0.81124 0.92730 1.90651 1.57500 1.50563 1.47463 1.21664 0.99422 0.90788 0.91296 0.86382 1.59019 1.14254 1.02052 1.59459 1.21256 0.93841 0.98729 0.97913 1.19372 0.94168 0.96674 0.93315 1.21569 1.08257 1.30317 0.96638 0.95269 1.26013 0.95396 0.96616 1.01449 1.70080 1.21481 1.45540 1.22479 0.85613 0.80743 0.78583 0.77377 1.19757 1.21363 1.16484 1.19683 0.96328 0.91651 0.95098 1.20936 0.90392 1.03471 1.03284 1.20420 0.91844 0.98347 1.08275 0.91109 0.91746 0.91919 0.91343 0.91143 0.90896 0.91103 0.83321 0.83654 0.91668 0.90642 0.75254 0.83772 0.84048 0.94044 0.91616 0.95894 0.95443 0.92703 0.89889 0.90550 0.91660 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 71.98 0.71 -0.15 16 2 C -0.12 -1.17 6.30 30.59 0.19 -0.97 16 3 C 0.05 0.59 4.74 71.98 0.34 0.93 16 4 O -0.33 -6.12 10.14 -92.54 -0.94 -7.06 16 5 C 0.13 2.51 6.69 22.51 0.15 2.66 16 6 C -0.22 -3.37 9.04 22.37 0.20 -3.17 16 7 C -0.05 -0.84 9.66 22.25 0.22 -0.63 16 8 C -0.15 -2.85 5.25 -19.85 -0.10 -2.95 16 9 C 0.17 3.49 4.92 85.63 0.42 3.91 16 10 N -0.71 -15.86 4.86 -466.78 -2.27 -18.13 16 11 C 0.49 13.76 7.07 87.66 0.62 14.38 16 12 O -0.58 -19.87 16.25 -3.05 -0.05 -19.92 16 13 C 0.08 2.46 3.15 44.17 0.14 2.60 16 14 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 15 N -0.82 -24.06 8.44 -171.81 -1.45 -25.51 16 16 C -0.08 -2.97 4.78 30.59 0.15 -2.82 16 17 C 0.00 0.10 3.93 29.85 0.12 0.22 16 18 C -0.53 -30.65 9.66 25.60 0.25 -30.41 16 19 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 20 C 0.00 0.08 5.47 84.65 0.46 0.54 16 21 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 22 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 26 C -0.03 -0.53 5.88 -19.88 -0.12 -0.65 16 27 C -0.12 -2.44 9.26 71.24 0.66 -1.78 16 28 C -0.17 -3.43 9.64 22.36 0.22 -3.21 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 35 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 36 H 0.15 1.58 6.30 -2.91 -0.02 1.57 16 37 H 0.15 1.69 8.03 -2.91 -0.02 1.67 16 38 H 0.07 1.50 7.29 -2.39 -0.02 1.48 16 39 H 0.08 1.51 8.00 -2.39 -0.02 1.49 16 40 H 0.41 8.09 8.46 -92.71 -0.78 7.30 16 41 H 0.35 8.56 9.06 -89.69 -0.81 7.75 16 42 H 0.35 10.73 8.58 -89.69 -0.77 9.96 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 46 H 0.03 1.28 7.18 -2.38 -0.02 1.26 16 47 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 48 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 50 H 0.06 1.45 6.32 -2.39 -0.02 1.43 16 51 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -72.81 414.70 0.62 -72.19 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -1.48 Total: 33.38 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.62 Total: -21.49 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.42 Total: -104.00 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.99 Total: -26.98 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -72.81 0.62 -72.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.658 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds