Wall clock time and date at job start Tue Mar 31 2020 19:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05570 * 0.02562 * 5 4 3 7 7 C 1.38129 * 119.94051 * 180.02562 * 6 5 4 8 8 C 1.38283 * 120.05835 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.94447 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.46989 * 259.99683 * 9 8 7 11 11 C 1.34769 * 120.00447 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99586 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00265 * 179.97438 * 11 10 9 14 14 H 1.08994 * 109.46979 * 319.99965 * 13 11 10 15 15 N 1.46899 * 109.47161 * 199.99968 * 13 11 10 16 16 C 1.52998 * 109.47272 * 80.00109 * 13 11 10 17 17 C 1.52993 * 109.47545 * 185.00097 * 16 13 11 18 18 C 1.50693 * 109.47433 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00110 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99845 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46988 * 89.99674 * 22 20 18 24 24 H 1.48497 * 109.47390 * 210.00006 * 22 20 18 25 25 H 1.48502 * 109.46609 * 330.00452 * 22 20 18 26 26 C 1.38244 * 120.11102 * 0.03711 * 8 7 6 27 27 C 1.50703 * 119.97151 * 179.97438 * 26 8 7 28 28 C 1.38169 * 120.05275 * 359.68852 * 26 8 7 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.07997 * 120.03240 * 0.02562 * 6 5 4 37 37 H 1.08006 * 119.96622 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47166 * 19.98897 * 9 8 7 39 39 H 1.08996 * 109.47487 * 139.99678 * 9 8 7 40 40 H 0.97005 * 119.99869 * 359.97438 * 10 9 8 41 41 H 1.00894 * 111.00480 * 176.04610 * 15 13 11 42 42 H 1.00907 * 111.00256 * 300.00323 * 15 13 11 43 43 H 1.09004 * 109.46763 * 305.00033 * 16 13 11 44 44 H 1.08997 * 109.47114 * 64.99664 * 16 13 11 45 45 H 1.09003 * 109.46631 * 300.00117 * 17 16 13 46 46 H 1.09008 * 109.46950 * 59.99330 * 17 16 13 47 47 H 0.97007 * 119.99782 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46898 * 90.00813 * 27 26 8 49 49 H 1.09000 * 109.46876 * 210.00477 * 27 26 8 50 50 H 1.08998 * 109.47044 * 330.00430 * 27 26 8 51 51 H 1.08007 * 120.02454 * 180.29426 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3313 3.8178 0.0014 7 6 3.9609 5.0473 0.0013 8 6 5.3419 5.1183 0.0003 9 6 6.0260 6.4611 0.0008 10 7 6.4603 6.7883 -1.3596 11 6 7.1003 7.9494 -1.6018 12 8 7.3161 8.7237 -0.6935 13 6 7.5475 8.2858 -3.0010 14 1 7.9382 7.3895 -3.4828 15 7 8.5990 9.3101 -2.9460 16 6 6.3581 8.8184 -3.8025 17 6 6.7814 9.0422 -5.2556 18 6 5.6097 9.5662 -6.0451 19 1 4.6582 9.7243 -5.5590 20 6 5.7525 9.8449 -7.3879 21 7 6.9114 9.6539 -7.9795 22 14 4.3002 10.4952 -8.3665 23 1 4.2922 11.9792 -8.3134 24 1 4.4162 10.0510 -9.7787 25 1 3.0377 9.9723 -7.7851 26 6 6.0959 3.9597 -0.0015 27 6 7.6008 4.0408 -0.0033 28 6 5.4710 2.7274 0.0043 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2528 3.7629 0.0027 37 1 3.3739 5.9539 0.0030 38 1 5.3307 7.2230 0.3533 39 1 6.8929 6.4270 0.6606 40 1 6.2880 6.1689 -2.0860 41 1 8.9611 9.5065 -3.8671 42 1 8.2613 10.1516 -2.5032 43 1 5.5438 8.0945 -3.7687 44 1 6.0233 9.7621 -3.3721 45 1 7.5957 9.7661 -5.2893 46 1 7.1162 8.0983 -5.6860 47 1 7.0118 9.8497 -8.9243 48 1 7.9648 4.0594 1.0240 49 1 8.0108 3.1720 -0.5183 50 1 7.9150 4.9494 -0.5167 51 1 6.0606 1.8224 0.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424164737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:40 Heat of formation + Delta-G solvation = -82.364397 kcal Electronic energy + Delta-G solvation = -27963.561210 eV Core-core repulsion = 24054.794893 eV Total energy + Delta-G solvation = -3908.766317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65248 -39.59075 -38.34590 -35.55358 -34.83951 -34.12674 -32.83841 -32.78158 -30.93377 -29.86760 -28.11016 -26.79587 -26.63221 -25.27515 -23.51074 -22.76860 -21.88123 -20.80103 -20.64714 -19.75771 -18.04946 -17.41827 -16.69287 -16.68700 -16.21785 -16.19817 -15.33879 -14.97150 -14.62294 -14.61062 -14.49828 -14.37771 -14.05653 -13.92787 -13.60445 -13.58009 -13.20167 -12.99397 -12.91276 -12.62469 -12.47036 -12.37470 -12.30786 -12.10605 -11.68462 -11.63963 -11.59078 -11.43374 -11.08545 -11.01832 -10.96839 -10.90857 -10.68136 -9.97890 -9.91484 -9.29639 -9.21254 -9.04468 -8.94801 -8.43739 -8.39674 -8.14736 -6.08251 -4.11202 1.03165 1.10118 2.79559 2.97414 3.21215 3.27112 3.33750 3.36736 3.68968 4.35000 4.39485 4.39567 4.49395 4.56538 4.61636 4.71497 4.83656 4.93860 4.96485 5.06947 5.09853 5.13901 5.18655 5.22018 5.28034 5.42728 5.43577 5.47519 5.53983 5.56961 5.61336 5.65339 5.68236 5.77370 5.79363 5.87368 6.05481 6.11565 6.30667 6.39357 6.49071 6.52866 6.56235 6.88955 7.10959 7.46113 7.52842 7.62787 7.74653 7.88899 7.92927 8.31732 8.50272 8.94703 9.53535 11.02617 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002348 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.242707 B =11919.971165 C =14167.601776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.316 6.316 5 C 0.139 3.861 6 C -0.216 4.216 7 C -0.054 4.054 8 C -0.145 4.145 9 C 0.168 3.832 10 N -0.730 5.730 11 C 0.525 3.475 12 O -0.539 6.539 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.025 4.025 27 C -0.124 4.124 28 C -0.157 4.157 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.354 0.646 42 H 0.345 0.655 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -18.751 18.268 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.230 6.230 5 C 0.094 3.906 6 C -0.235 4.235 7 C -0.072 4.072 8 C -0.146 4.146 9 C 0.044 3.956 10 N -0.384 5.384 11 C 0.312 3.688 12 O -0.415 6.415 13 C -0.040 4.040 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.026 4.026 27 C -0.180 4.180 28 C -0.175 4.175 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.751 -18.877 19.218 27.772 hybrid contribution -1.908 0.714 -1.629 2.609 sum -8.659 -18.164 17.589 26.726 Atomic orbital electron populations 1.21697 0.94166 1.02611 1.02322 1.21486 0.96109 0.94774 1.03748 1.22903 0.78345 0.98910 1.01601 1.86046 1.21406 1.27090 1.88481 1.18990 0.92222 0.84049 0.95344 1.21203 1.00054 0.92245 1.10016 1.20897 0.93715 0.97293 0.95342 1.19677 0.93523 0.94382 1.06994 1.20020 0.98624 0.92184 0.84724 1.46116 1.60488 1.21652 1.10123 1.20910 0.76254 0.80364 0.91277 1.90635 1.55391 1.48961 1.46540 1.21467 0.93718 0.97797 0.91041 0.88622 1.58743 1.35835 1.14503 1.27184 1.22374 0.95962 1.00262 0.99099 1.19103 0.96918 0.97138 0.88145 1.21177 0.97036 1.43756 0.94150 0.92755 1.25018 0.95844 0.95605 0.97904 1.69952 1.23390 1.48595 1.11244 0.86583 0.82860 0.79211 0.79302 1.20623 1.21156 1.19907 1.19609 0.96188 0.91452 0.95314 1.20936 0.90429 1.03749 1.02907 1.20265 0.91243 0.98098 1.07905 0.92231 0.91668 0.92357 0.90739 0.90854 0.91827 0.91982 0.85454 0.85397 0.91093 0.90746 0.76334 0.83091 0.84164 0.92559 0.92712 0.96388 0.96334 0.92894 0.90633 0.91083 0.90375 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.70 6.30 -26.73 -0.17 -0.87 16 3 C 0.06 0.41 4.74 37.16 0.18 0.58 16 4 O -0.32 -3.14 10.14 -19.44 -0.20 -3.33 16 5 C 0.14 1.45 6.69 -39.22 -0.26 1.18 16 6 C -0.22 -2.09 9.04 -39.43 -0.36 -2.44 16 7 C -0.05 -0.54 9.66 -39.60 -0.38 -0.92 16 8 C -0.15 -1.52 5.25 -104.60 -0.55 -2.07 16 9 C 0.17 1.96 4.93 -5.19 -0.03 1.93 16 10 N -0.73 -9.51 4.88 -61.47 -0.30 -9.81 16 11 C 0.53 8.64 7.08 -10.99 -0.08 8.56 16 12 O -0.54 -10.49 16.25 5.55 0.09 -10.40 16 13 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 15 N -0.83 -14.39 8.94 -5.66 -0.05 -14.44 16 16 C -0.14 -2.70 4.78 -26.74 -0.13 -2.83 16 17 C 0.02 0.59 4.74 -27.89 -0.13 0.45 16 18 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.02 -0.25 5.88 -104.64 -0.62 -0.86 16 27 C -0.12 -1.07 9.26 36.01 0.33 -0.74 16 28 C -0.16 -1.58 9.64 -39.43 -0.38 -1.96 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.42 7.67 -51.93 -0.40 0.03 16 35 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 36 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 37 H 0.13 1.13 8.03 -52.48 -0.42 0.71 16 38 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 39 H 0.07 0.88 7.28 -51.93 -0.38 0.51 16 40 H 0.40 4.74 8.46 -40.82 -0.35 4.40 16 41 H 0.35 6.14 7.55 -39.29 -0.30 5.85 16 42 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 50 H 0.08 0.76 6.33 -51.93 -0.33 0.43 16 51 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -32.01 416.36 -9.92 -41.93 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.62 Total: 11.18 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.83 Total: -12.38 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.39 Total: -49.58 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.11 Total: -13.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.01 -9.92 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.435 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds