Wall clock time and date at job start Tue Mar 31 2020 19:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05570 * 0.02562 * 5 4 3 7 7 C 1.38129 * 119.94051 * 180.02562 * 6 5 4 8 8 C 1.38283 * 120.05835 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.94447 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.46989 * 259.99683 * 9 8 7 11 11 C 1.34769 * 120.00447 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99586 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00265 * 179.97438 * 11 10 9 14 14 H 1.08994 * 109.46979 * 319.99965 * 13 11 10 15 15 N 1.46899 * 109.47161 * 199.99968 * 13 11 10 16 16 C 1.52998 * 109.47272 * 80.00109 * 13 11 10 17 17 C 1.52993 * 109.47545 * 185.00097 * 16 13 11 18 18 C 1.50693 * 109.47433 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00110 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99845 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46988 * 89.99674 * 22 20 18 24 24 H 1.48497 * 109.47390 * 210.00006 * 22 20 18 25 25 H 1.48502 * 109.46609 * 330.00452 * 22 20 18 26 26 C 1.38244 * 120.11102 * 0.03711 * 8 7 6 27 27 C 1.50703 * 119.97151 * 179.97438 * 26 8 7 28 28 C 1.38169 * 120.05275 * 359.68852 * 26 8 7 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.07997 * 120.03240 * 0.02562 * 6 5 4 37 37 H 1.08006 * 119.96622 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47166 * 19.98897 * 9 8 7 39 39 H 1.08996 * 109.47487 * 139.99678 * 9 8 7 40 40 H 0.97005 * 119.99869 * 359.97438 * 10 9 8 41 41 H 1.00894 * 111.00480 * 176.04610 * 15 13 11 42 42 H 1.00907 * 111.00256 * 300.00323 * 15 13 11 43 43 H 1.09004 * 109.46763 * 305.00033 * 16 13 11 44 44 H 1.08997 * 109.47114 * 64.99664 * 16 13 11 45 45 H 1.09003 * 109.46631 * 300.00117 * 17 16 13 46 46 H 1.09008 * 109.46950 * 59.99330 * 17 16 13 47 47 H 0.97007 * 119.99782 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46898 * 90.00813 * 27 26 8 49 49 H 1.09000 * 109.46876 * 210.00477 * 27 26 8 50 50 H 1.08998 * 109.47044 * 330.00430 * 27 26 8 51 51 H 1.08007 * 120.02454 * 180.29426 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3313 3.8178 0.0014 7 6 3.9609 5.0473 0.0013 8 6 5.3419 5.1183 0.0003 9 6 6.0260 6.4611 0.0008 10 7 6.4603 6.7883 -1.3596 11 6 7.1003 7.9494 -1.6018 12 8 7.3161 8.7237 -0.6935 13 6 7.5475 8.2858 -3.0010 14 1 7.9382 7.3895 -3.4828 15 7 8.5990 9.3101 -2.9460 16 6 6.3581 8.8184 -3.8025 17 6 6.7814 9.0422 -5.2556 18 6 5.6097 9.5662 -6.0451 19 1 4.6582 9.7243 -5.5590 20 6 5.7525 9.8449 -7.3879 21 7 6.9114 9.6539 -7.9795 22 14 4.3002 10.4952 -8.3665 23 1 4.2922 11.9792 -8.3134 24 1 4.4162 10.0510 -9.7787 25 1 3.0377 9.9723 -7.7851 26 6 6.0959 3.9597 -0.0015 27 6 7.6008 4.0408 -0.0033 28 6 5.4710 2.7274 0.0043 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2528 3.7629 0.0027 37 1 3.3739 5.9539 0.0030 38 1 5.3307 7.2230 0.3533 39 1 6.8929 6.4270 0.6606 40 1 6.2880 6.1689 -2.0860 41 1 8.9611 9.5065 -3.8671 42 1 8.2613 10.1516 -2.5032 43 1 5.5438 8.0945 -3.7687 44 1 6.0233 9.7621 -3.3721 45 1 7.5957 9.7661 -5.2893 46 1 7.1162 8.0983 -5.6860 47 1 7.0118 9.8497 -8.9243 48 1 7.9648 4.0594 1.0240 49 1 8.0108 3.1720 -0.5183 50 1 7.9150 4.9494 -0.5167 51 1 6.0606 1.8224 0.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:39 Heat of formation + Delta-G solvation = -102.261888 kcal Electronic energy + Delta-G solvation = -27964.424030 eV Core-core repulsion = 24054.794893 eV Total energy + Delta-G solvation = -3909.629137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45349 -40.78752 -39.15559 -37.09394 -35.84232 -34.82742 -34.75945 -33.51745 -31.82013 -31.66596 -28.96695 -28.09548 -27.22872 -26.57636 -25.04042 -23.44259 -22.55778 -22.33229 -21.46964 -21.10743 -18.93357 -18.74164 -18.11760 -17.49490 -17.30852 -17.22294 -16.61303 -16.27162 -16.02809 -15.72962 -15.41673 -15.36143 -15.14259 -14.81845 -14.66857 -14.58140 -14.28615 -14.22844 -14.02729 -13.69628 -13.44145 -13.26597 -13.06249 -13.04254 -12.98272 -12.93349 -12.67094 -12.50568 -12.31978 -12.13277 -12.09873 -11.79995 -11.71533 -11.68674 -11.51791 -11.29940 -10.76282 -10.55846 -10.10346 -9.78908 -9.63419 -9.15641 -8.21189 -6.31384 0.25295 0.33475 1.39612 1.39958 1.50647 1.63999 2.15343 2.18853 2.40035 2.78554 3.12349 3.66226 3.73439 3.78083 3.85868 3.88609 3.93210 3.97916 4.13283 4.15167 4.24867 4.27184 4.30578 4.33100 4.53337 4.54712 4.61886 4.67988 4.69105 4.77985 4.78147 4.83562 4.86259 5.00833 5.09865 5.10334 5.14614 5.16529 5.31160 5.34729 5.35343 5.41288 5.47136 5.62805 5.66569 5.76472 5.81177 6.09066 6.21788 6.41029 6.49568 6.54656 6.84058 7.24223 7.37503 8.89483 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002348 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.242707 B =11919.971165 C =14167.601776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.051 3.949 4 O -0.330 6.330 5 C 0.131 3.869 6 C -0.219 4.219 7 C -0.059 4.059 8 C -0.153 4.153 9 C 0.172 3.828 10 N -0.714 5.714 11 C 0.529 3.471 12 O -0.571 6.571 13 C 0.081 3.919 14 H 0.108 0.892 15 N -0.829 5.829 16 C -0.121 4.121 17 C 0.030 3.970 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.004 3.996 21 N -0.926 5.926 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.265 1.265 26 C -0.026 4.026 27 C -0.122 4.122 28 C -0.167 4.167 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.410 0.590 41 H 0.352 0.648 42 H 0.344 0.656 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -19.612 18.698 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.023 4.023 4 O -0.244 6.244 5 C 0.085 3.915 6 C -0.238 4.238 7 C -0.077 4.077 8 C -0.154 4.154 9 C 0.049 3.951 10 N -0.366 5.366 11 C 0.315 3.685 12 O -0.449 6.449 13 C -0.034 4.034 14 H 0.126 0.874 15 N -0.361 5.361 16 C -0.160 4.160 17 C -0.008 4.008 18 C -0.582 4.582 19 H 0.073 0.927 20 C -0.195 4.195 21 N -0.566 5.566 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.027 4.027 27 C -0.178 4.178 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.246 0.754 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.234 -19.775 19.656 29.073 hybrid contribution -1.467 0.904 -1.738 2.447 sum -9.702 -18.871 17.918 27.773 Atomic orbital electron populations 1.21691 0.93001 1.03204 1.02643 1.21494 0.97020 0.93885 1.03488 1.23124 0.77024 0.99964 1.02231 1.86037 1.22926 1.27031 1.88383 1.19188 0.92558 0.84505 0.95216 1.21394 1.00995 0.91823 1.09584 1.21071 0.93666 0.97942 0.95038 1.19590 0.93806 0.93771 1.08209 1.20033 0.98603 0.92849 0.83595 1.46014 1.58888 1.20519 1.11186 1.20678 0.76418 0.80953 0.90432 1.90626 1.56908 1.50207 1.47180 1.21402 0.92527 0.98031 0.91469 0.87402 1.58759 1.35779 1.14567 1.26960 1.22126 0.97220 1.00202 0.96494 1.18972 0.95617 0.95552 0.90622 1.21614 0.97918 1.43750 0.94888 0.92745 1.25878 0.98565 0.95879 0.99129 1.70065 1.25340 1.49589 1.11626 0.85538 0.79674 0.78628 0.77766 1.20089 1.20687 1.18978 1.19736 0.96795 0.91281 0.94874 1.20941 0.89683 1.03675 1.03512 1.20440 0.91530 0.98482 1.08073 0.92118 0.90975 0.91818 0.91233 0.90910 0.91449 0.91017 0.83775 0.84412 0.91385 0.90795 0.75400 0.83294 0.84328 0.91715 0.93658 0.97867 0.98027 0.92754 0.89720 0.89967 0.91460 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 71.98 0.71 -0.33 16 2 C -0.12 -1.23 6.30 30.59 0.19 -1.04 16 3 C 0.05 0.65 4.74 71.98 0.34 0.99 16 4 O -0.33 -6.18 10.14 -92.47 -0.94 -7.12 16 5 C 0.13 2.56 6.69 22.50 0.15 2.71 16 6 C -0.22 -3.89 9.04 22.37 0.20 -3.69 16 7 C -0.06 -1.09 9.66 22.25 0.22 -0.87 16 8 C -0.15 -3.02 5.25 -19.85 -0.10 -3.12 16 9 C 0.17 3.83 4.93 85.63 0.42 4.25 16 10 N -0.71 -17.74 4.88 -466.79 -2.28 -20.02 16 11 C 0.53 16.94 7.08 87.66 0.62 17.56 16 12 O -0.57 -21.86 16.25 -3.05 -0.05 -21.91 16 13 C 0.08 2.71 3.21 44.17 0.14 2.85 16 14 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 15 N -0.83 -28.59 8.94 -171.81 -1.54 -30.12 16 16 C -0.12 -4.70 4.78 30.59 0.15 -4.55 16 17 C 0.03 1.45 4.74 29.84 0.14 1.59 16 18 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 19 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 22 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.03 -0.49 5.88 -19.88 -0.12 -0.61 16 27 C -0.12 -1.95 9.26 71.24 0.66 -1.29 16 28 C -0.17 -3.18 9.64 22.37 0.22 -2.96 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 35 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 36 H 0.14 1.96 6.30 -2.91 -0.02 1.95 16 37 H 0.14 2.22 8.03 -2.91 -0.02 2.19 16 38 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 39 H 0.07 1.69 7.28 -2.39 -0.02 1.67 16 40 H 0.41 9.06 8.46 -92.70 -0.78 8.28 16 41 H 0.35 12.31 7.55 -89.70 -0.68 11.63 16 42 H 0.34 12.09 8.58 -89.69 -0.77 11.32 16 43 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.00 0.16 6.87 -2.39 -0.02 0.14 16 46 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 50 H 0.07 1.23 6.33 -2.39 -0.02 1.21 16 51 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -67.18 416.36 0.86 -66.32 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -1.29 Total: 38.98 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.64 Total: -17.47 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -3.53 Total: -104.23 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.99 Total: -29.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.18 0.86 -66.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.940 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds