Wall clock time and date at job start Tue Mar 31 2020 19:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46672 * 2 1 4 4 O 1.42905 * 109.46777 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00001 * 180.02562 * 4 3 2 6 6 C 1.38754 * 120.05427 * 0.02562 * 5 4 3 7 7 C 1.38119 * 119.94364 * 179.97438 * 6 5 4 8 8 C 1.38293 * 120.05232 * 359.75026 * 7 6 5 9 9 C 1.38232 * 120.11255 * 0.50567 * 8 7 6 10 10 C 1.50704 * 119.97209 * 179.76676 * 9 8 7 11 11 N 1.46497 * 109.47449 * 269.72368 * 10 9 8 12 12 C 1.34770 * 120.00769 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99279 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00510 * 180.02562 * 12 11 10 15 15 N 1.46905 * 109.47059 * 179.97438 * 14 12 11 16 16 C 1.46897 * 111.00073 * 174.54001 * 15 14 12 17 17 H 1.09005 * 109.46846 * 325.97379 * 16 15 14 18 18 C 1.50694 * 109.47298 * 205.96961 * 16 15 14 19 19 H 1.08002 * 119.99924 * 0.02562 * 18 16 15 20 20 C 1.37886 * 120.00197 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99676 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99942 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47131 * 60.00082 * 22 20 18 24 24 H 1.48499 * 109.46816 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47311 * 300.00047 * 22 20 18 26 26 C 1.53002 * 109.47255 * 85.96931 * 16 15 14 27 27 C 1.52991 * 109.47290 * 65.16211 * 26 16 15 28 28 C 1.38165 * 120.05593 * 359.49217 * 9 8 7 29 29 H 1.08997 * 109.47211 * 299.99569 * 1 2 3 30 30 H 1.08997 * 109.47566 * 59.99856 * 1 2 3 31 31 H 1.08997 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46596 * 240.00371 * 2 1 3 33 33 H 1.08994 * 109.47077 * 120.00236 * 2 1 3 34 34 H 1.08995 * 109.47246 * 60.00720 * 3 2 1 35 35 H 1.08997 * 109.47242 * 300.00342 * 3 2 1 36 36 H 1.08002 * 120.02615 * 359.96155 * 6 5 4 37 37 H 1.08000 * 119.97449 * 180.02562 * 7 6 5 38 38 H 1.08005 * 119.94145 * 180.27511 * 8 7 6 39 39 H 1.09006 * 109.47010 * 149.72472 * 10 9 8 40 40 H 1.08994 * 109.47022 * 29.72792 * 10 9 8 41 41 H 0.97011 * 119.99612 * 0.02562 * 11 10 9 42 42 H 1.09006 * 109.47118 * 60.00111 * 14 12 11 43 43 H 1.08998 * 109.47074 * 299.99780 * 14 12 11 44 44 H 1.00905 * 111.00024 * 298.49402 * 15 14 12 45 45 H 0.96995 * 119.99831 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.46887 * 185.16343 * 26 16 15 47 47 H 1.08998 * 109.46955 * 305.16147 * 26 16 15 48 48 H 1.08993 * 109.47621 * 174.85350 * 27 26 16 49 49 H 1.09007 * 109.47209 * 294.85646 * 27 26 16 50 50 H 1.09000 * 109.47062 * 54.85119 * 27 26 16 51 51 H 1.08010 * 120.02950 * 180.23133 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0860 2.6535 -0.0001 6 6 3.3313 3.8179 0.0014 7 6 3.9607 5.0473 0.0024 8 6 5.3418 5.1183 0.0071 9 6 6.0958 3.9598 0.0002 10 6 7.6007 4.0409 0.0000 11 7 8.0882 4.0683 -1.3812 12 6 9.4112 4.1403 -1.6277 13 8 10.1982 4.1829 -0.7059 14 6 9.9125 4.1691 -3.0486 15 7 11.3794 4.2493 -3.0487 16 6 11.9119 4.1490 -4.4141 17 1 11.2824 3.4805 -5.0014 18 6 13.3162 3.6044 -4.3668 19 1 13.7678 3.3571 -3.4174 20 6 14.0243 3.4209 -5.5357 21 7 13.4742 3.7217 -6.6917 22 14 15.7647 2.7452 -5.4771 23 1 15.7522 1.3991 -4.8501 24 1 16.3031 2.6440 -6.8573 25 1 16.6227 3.6558 -4.6772 26 6 11.9243 5.5361 -5.0598 27 6 12.9070 6.4385 -4.3111 28 6 5.4710 2.7275 -0.0007 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 2.2527 3.7628 0.0016 37 1 3.3738 5.9539 0.0040 38 1 5.8321 6.0806 0.0124 39 1 8.0115 3.1712 0.5131 40 1 7.9157 4.9486 0.5146 41 1 7.4585 4.0354 -2.1185 42 1 9.5014 5.0387 -3.5614 43 1 9.5978 3.2613 -3.5633 44 1 11.6953 5.0953 -2.5985 45 1 13.9723 3.5930 -7.5140 46 1 12.2324 5.4490 -6.1018 47 1 10.9249 5.9683 -5.0114 48 1 12.9845 7.3965 -4.8249 49 1 12.5498 6.5996 -3.2939 50 1 13.8870 5.9621 -4.2808 51 1 6.0606 1.8225 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584002771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:27 Heat of formation + Delta-G solvation = -61.738697 kcal Electronic energy + Delta-G solvation = -27563.231369 eV Core-core repulsion = 23655.359450 eV Total energy + Delta-G solvation = -3907.871919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59450 -39.37046 -38.10243 -36.26067 -34.78595 -34.28789 -32.52228 -31.60582 -30.63527 -30.31225 -27.60376 -27.02232 -26.10702 -24.37157 -23.15370 -22.92257 -22.31459 -21.12364 -20.25586 -19.27659 -18.30208 -16.91548 -16.73389 -16.57398 -16.33409 -15.98920 -15.66628 -15.26638 -14.73737 -14.63925 -14.58359 -14.22355 -14.09286 -13.57644 -13.40057 -13.07562 -12.96541 -12.83780 -12.72217 -12.65408 -12.44637 -12.24940 -11.91176 -11.78709 -11.77923 -11.64925 -11.45555 -11.11341 -11.07301 -10.87986 -10.73328 -10.49009 -10.00543 -9.83773 -9.60851 -9.54403 -9.17906 -8.95309 -8.91123 -8.53452 -8.30283 -7.18184 -5.93999 -3.94569 0.87205 1.11250 2.74321 3.03336 3.19016 3.39250 3.42483 3.47235 3.67586 4.28123 4.35168 4.39028 4.49451 4.51586 4.65781 4.70091 4.82495 4.88529 4.98203 5.04844 5.11416 5.17083 5.21673 5.37776 5.43165 5.44606 5.45630 5.53396 5.63320 5.69178 5.73137 5.88566 5.93376 5.94289 6.07445 6.27328 6.37553 6.39535 6.40127 6.52391 6.59297 6.91269 7.05953 7.24430 7.28468 7.54827 7.65968 7.72609 7.93840 8.29540 8.52617 8.59163 8.66317 9.11607 9.68730 11.13203 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.001772 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.006416 B =15795.574789 C =16582.230389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.059 3.941 4 O -0.315 6.315 5 C 0.128 3.872 6 C -0.205 4.205 7 C -0.082 4.082 8 C -0.139 4.139 9 C -0.064 4.064 10 C 0.162 3.838 11 N -0.737 5.737 12 C 0.513 3.487 13 O -0.523 6.523 14 C 0.044 3.956 15 N -0.667 5.667 16 C 0.216 3.784 17 H 0.034 0.966 18 C -0.487 4.487 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.895 3.105 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.146 4.146 27 C -0.131 4.131 28 C -0.133 4.133 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.400 0.600 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.336 0.664 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.010 0.990 48 H 0.023 0.977 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.878 -0.203 12.391 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.229 6.229 5 C 0.083 3.917 6 C -0.224 4.224 7 C -0.100 4.100 8 C -0.158 4.158 9 C -0.064 4.064 10 C 0.039 3.961 11 N -0.392 5.392 12 C 0.300 3.700 13 O -0.397 6.397 14 C -0.089 4.089 15 N -0.300 5.300 16 C 0.108 3.892 17 H 0.052 0.948 18 C -0.525 4.525 19 H 0.081 0.919 20 C -0.144 4.144 21 N -0.538 5.538 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.185 4.185 27 C -0.189 4.189 28 C -0.152 4.152 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.233 0.767 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.028 0.972 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.048 -1.054 13.017 30.036 hybrid contribution -0.008 0.707 -0.811 1.076 sum -27.056 -0.347 12.205 29.683 Atomic orbital electron populations 1.21692 0.94188 1.02658 1.02190 1.21497 0.96060 0.94760 1.03924 1.22888 0.78400 0.98965 1.01389 1.86074 1.21324 1.26934 1.88586 1.18945 0.92164 0.84156 0.96440 1.21277 1.00020 0.92475 1.08607 1.20940 0.94523 0.97037 0.97475 1.21042 0.93714 0.98172 1.02823 1.19716 0.95209 0.92470 0.99023 1.20113 0.88120 1.03234 0.84663 1.46107 1.07744 1.77636 1.07679 1.21137 0.81179 0.75135 0.92553 1.90681 1.54981 1.47717 1.46335 1.21782 0.93647 1.02058 0.91445 1.60528 1.02792 1.44312 1.22327 1.19276 0.95652 0.92144 0.82116 0.94848 1.21034 0.97860 1.40771 0.92877 0.91882 1.24906 0.98151 0.95895 0.95442 1.69866 1.37305 1.49195 0.97403 0.86601 0.84730 0.79665 0.76649 1.20331 1.21576 1.20358 1.22126 0.94629 0.97571 1.04222 1.21605 1.02171 0.97498 0.97588 1.20387 0.91356 0.98395 1.05074 0.92385 0.92332 0.91622 0.90662 0.90743 0.92054 0.91989 0.85569 0.85591 0.85525 0.90568 0.90570 0.76661 0.93593 0.88751 0.84501 0.93109 0.88766 0.97172 0.95759 0.95306 0.91118 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 37.16 0.37 -0.18 16 2 C -0.12 -0.66 6.30 -26.73 -0.17 -0.83 16 3 C 0.06 0.37 4.74 37.16 0.18 0.55 16 4 O -0.32 -3.02 10.14 -19.43 -0.20 -3.22 16 5 C 0.13 1.24 6.69 -39.22 -0.26 0.98 16 6 C -0.20 -1.66 9.04 -39.43 -0.36 -2.02 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 8 C -0.14 -1.20 9.70 -39.56 -0.38 -1.58 16 9 C -0.06 -0.62 5.25 -104.65 -0.55 -1.17 16 10 C 0.16 1.83 5.80 -5.19 -0.03 1.80 16 11 N -0.74 -9.17 5.55 -61.47 -0.34 -9.51 16 12 C 0.51 8.61 7.88 -10.99 -0.09 8.53 16 13 O -0.52 -10.86 16.32 5.55 0.09 -10.77 16 14 C 0.04 0.78 5.99 -4.97 -0.03 0.75 16 15 N -0.67 -14.76 5.77 -109.22 -0.63 -15.39 16 16 C 0.22 5.34 2.33 -68.87 -0.16 5.18 16 17 H 0.03 0.89 7.70 -51.93 -0.40 0.49 16 18 C -0.49 -13.38 7.25 -34.44 -0.25 -13.63 16 19 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 21 N -0.90 -25.25 11.38 55.43 0.63 -24.62 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.15 -3.39 5.51 -26.73 -0.15 -3.54 16 27 C -0.13 -2.85 9.40 37.15 0.35 -2.50 16 28 C -0.13 -1.34 9.64 -39.44 -0.38 -1.72 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 35 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 36 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.40 4.10 8.46 -40.82 -0.35 3.75 16 42 H 0.05 0.74 7.55 -51.93 -0.39 0.35 16 43 H 0.09 1.61 7.92 -51.93 -0.41 1.19 16 44 H 0.34 7.44 6.54 -39.29 -0.26 7.18 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.09 2.44 6.23 -51.93 -0.32 2.12 16 47 H 0.01 0.20 7.51 -51.93 -0.39 -0.19 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.03 0.57 6.63 -51.92 -0.34 0.23 16 50 H 0.07 1.69 6.85 -51.93 -0.36 1.33 16 51 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 413.10 15.07 6.23 6.23 Total: -1.00 -31.69 413.10 -10.18 -41.87 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.54 Total: 7.71 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.40 Total: -8.96 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.34 Total: -49.52 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.11 Total: -13.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.69 -10.18 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.866 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds