Wall clock time and date at job start Tue Mar 31 2020 19:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46672 * 2 1 4 4 O 1.42905 * 109.46777 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00001 * 180.02562 * 4 3 2 6 6 C 1.38754 * 120.05427 * 0.02562 * 5 4 3 7 7 C 1.38119 * 119.94364 * 179.97438 * 6 5 4 8 8 C 1.38293 * 120.05232 * 359.75026 * 7 6 5 9 9 C 1.38232 * 120.11255 * 0.50567 * 8 7 6 10 10 C 1.50704 * 119.97209 * 179.76676 * 9 8 7 11 11 N 1.46497 * 109.47449 * 269.72368 * 10 9 8 12 12 C 1.34770 * 120.00769 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99279 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00510 * 180.02562 * 12 11 10 15 15 N 1.46905 * 109.47059 * 179.97438 * 14 12 11 16 16 C 1.46897 * 111.00073 * 174.54001 * 15 14 12 17 17 H 1.09005 * 109.46846 * 325.97379 * 16 15 14 18 18 C 1.50694 * 109.47298 * 205.96961 * 16 15 14 19 19 H 1.08002 * 119.99924 * 0.02562 * 18 16 15 20 20 C 1.37886 * 120.00197 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99676 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99942 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47131 * 60.00082 * 22 20 18 24 24 H 1.48499 * 109.46816 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47311 * 300.00047 * 22 20 18 26 26 C 1.53002 * 109.47255 * 85.96931 * 16 15 14 27 27 C 1.52991 * 109.47290 * 65.16211 * 26 16 15 28 28 C 1.38165 * 120.05593 * 359.49217 * 9 8 7 29 29 H 1.08997 * 109.47211 * 299.99569 * 1 2 3 30 30 H 1.08997 * 109.47566 * 59.99856 * 1 2 3 31 31 H 1.08997 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46596 * 240.00371 * 2 1 3 33 33 H 1.08994 * 109.47077 * 120.00236 * 2 1 3 34 34 H 1.08995 * 109.47246 * 60.00720 * 3 2 1 35 35 H 1.08997 * 109.47242 * 300.00342 * 3 2 1 36 36 H 1.08002 * 120.02615 * 359.96155 * 6 5 4 37 37 H 1.08000 * 119.97449 * 180.02562 * 7 6 5 38 38 H 1.08005 * 119.94145 * 180.27511 * 8 7 6 39 39 H 1.09006 * 109.47010 * 149.72472 * 10 9 8 40 40 H 1.08994 * 109.47022 * 29.72792 * 10 9 8 41 41 H 0.97011 * 119.99612 * 0.02562 * 11 10 9 42 42 H 1.09006 * 109.47118 * 60.00111 * 14 12 11 43 43 H 1.08998 * 109.47074 * 299.99780 * 14 12 11 44 44 H 1.00905 * 111.00024 * 298.49402 * 15 14 12 45 45 H 0.96995 * 119.99831 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.46887 * 185.16343 * 26 16 15 47 47 H 1.08998 * 109.46955 * 305.16147 * 26 16 15 48 48 H 1.08993 * 109.47621 * 174.85350 * 27 26 16 49 49 H 1.09007 * 109.47209 * 294.85646 * 27 26 16 50 50 H 1.09000 * 109.47062 * 54.85119 * 27 26 16 51 51 H 1.08010 * 120.02950 * 180.23133 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0860 2.6535 -0.0001 6 6 3.3313 3.8179 0.0014 7 6 3.9607 5.0473 0.0024 8 6 5.3418 5.1183 0.0071 9 6 6.0958 3.9598 0.0002 10 6 7.6007 4.0409 0.0000 11 7 8.0882 4.0683 -1.3812 12 6 9.4112 4.1403 -1.6277 13 8 10.1982 4.1829 -0.7059 14 6 9.9125 4.1691 -3.0486 15 7 11.3794 4.2493 -3.0487 16 6 11.9119 4.1490 -4.4141 17 1 11.2824 3.4805 -5.0014 18 6 13.3162 3.6044 -4.3668 19 1 13.7678 3.3571 -3.4174 20 6 14.0243 3.4209 -5.5357 21 7 13.4742 3.7217 -6.6917 22 14 15.7647 2.7452 -5.4771 23 1 15.7522 1.3991 -4.8501 24 1 16.3031 2.6440 -6.8573 25 1 16.6227 3.6558 -4.6772 26 6 11.9243 5.5361 -5.0598 27 6 12.9070 6.4385 -4.3111 28 6 5.4710 2.7275 -0.0007 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 2.2527 3.7628 0.0016 37 1 3.3738 5.9539 0.0040 38 1 5.8321 6.0806 0.0124 39 1 8.0115 3.1712 0.5131 40 1 7.9157 4.9486 0.5146 41 1 7.4585 4.0354 -2.1185 42 1 9.5014 5.0387 -3.5614 43 1 9.5978 3.2613 -3.5633 44 1 11.6953 5.0953 -2.5985 45 1 13.9723 3.5930 -7.5140 46 1 12.2324 5.4490 -6.1018 47 1 10.9249 5.9683 -5.0114 48 1 12.9845 7.3965 -4.8249 49 1 12.5498 6.5996 -3.2939 50 1 13.8870 5.9621 -4.2808 51 1 6.0606 1.8225 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584002771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:26 Heat of formation + Delta-G solvation = -81.580579 kcal Electronic energy + Delta-G solvation = -27564.091778 eV Core-core repulsion = 23655.359450 eV Total energy + Delta-G solvation = -3908.732328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29829 -40.61618 -38.86986 -38.02412 -35.81651 -34.79544 -34.43339 -32.71423 -32.15601 -31.04241 -29.08835 -27.82463 -27.28231 -25.85883 -24.93200 -23.59392 -22.86157 -21.75614 -21.58698 -21.12221 -19.12420 -18.40175 -17.56706 -17.27168 -17.22918 -17.18356 -16.97505 -16.61862 -16.48587 -15.81947 -15.28867 -15.18255 -15.06595 -14.78353 -14.54305 -14.48414 -14.17823 -14.10179 -13.82694 -13.51120 -13.43541 -13.30597 -13.05019 -12.97454 -12.81197 -12.66504 -12.49221 -12.43203 -12.26770 -12.14839 -11.93507 -11.70067 -11.68193 -11.54174 -11.41001 -11.12096 -10.79980 -10.40352 -10.11532 -9.92374 -9.20699 -8.91237 -8.04077 -6.11015 0.17278 0.44248 1.45091 1.45632 1.53482 1.68725 2.13030 2.22839 2.48380 2.83423 3.24659 3.59142 3.76827 3.81061 3.93800 3.94955 4.00362 4.07368 4.19007 4.28708 4.33703 4.40896 4.45229 4.49477 4.54306 4.54616 4.57798 4.64554 4.69906 4.75358 4.78093 4.81921 5.01363 5.11855 5.12283 5.16808 5.27814 5.34406 5.34830 5.40677 5.43489 5.44112 5.57258 5.72919 5.76335 5.76834 5.84243 6.32226 6.44109 6.51319 6.69720 6.82700 6.99086 7.30717 7.55905 9.00907 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.001772 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.006416 B =15795.574789 C =16582.230389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.053 3.947 4 O -0.336 6.336 5 C 0.115 3.885 6 C -0.202 4.202 7 C -0.078 4.078 8 C -0.141 4.141 9 C -0.068 4.068 10 C 0.165 3.835 11 N -0.715 5.715 12 C 0.519 3.481 13 O -0.568 6.568 14 C 0.044 3.956 15 N -0.682 5.682 16 C 0.222 3.778 17 H 0.009 0.991 18 C -0.503 4.503 19 H 0.045 0.955 20 C 0.017 3.983 21 N -0.916 5.916 22 Si 0.949 3.051 23 H -0.279 1.279 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.138 4.138 27 C -0.123 4.123 28 C -0.150 4.150 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.413 0.587 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.335 0.665 45 H 0.260 0.740 46 H 0.066 0.934 47 H 0.033 0.967 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.988 0.969 12.718 32.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.022 4.022 4 O -0.251 6.251 5 C 0.070 3.930 6 C -0.220 4.220 7 C -0.096 4.096 8 C -0.160 4.160 9 C -0.068 4.068 10 C 0.042 3.958 11 N -0.369 5.369 12 C 0.306 3.694 13 O -0.446 6.446 14 C -0.089 4.089 15 N -0.314 5.314 16 C 0.113 3.887 17 H 0.027 0.973 18 C -0.541 4.541 19 H 0.064 0.936 20 C -0.181 4.181 21 N -0.557 5.557 22 Si 0.775 3.225 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.200 1.200 26 C -0.178 4.178 27 C -0.181 4.181 28 C -0.169 4.169 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.154 0.846 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -29.219 0.114 13.338 32.119 hybrid contribution 0.506 0.317 -0.880 1.063 sum -28.713 0.431 12.458 31.302 Atomic orbital electron populations 1.21678 0.92729 1.03156 1.02795 1.21514 0.97239 0.94190 1.03257 1.23115 0.76890 0.99753 1.02403 1.86053 1.23085 1.27259 1.88674 1.19090 0.92153 0.84880 0.96900 1.21570 1.01163 0.91965 1.07336 1.21277 0.94289 0.97968 0.96093 1.21237 0.94332 0.98107 1.02306 1.19507 0.93990 0.92935 1.00380 1.20117 0.89393 1.02787 0.83487 1.45903 1.06501 1.75547 1.08978 1.20904 0.82148 0.74856 0.91540 1.90667 1.56401 1.50262 1.47252 1.21819 0.91182 1.03311 0.92581 1.60352 1.05729 1.44545 1.20737 1.19039 0.93956 0.92392 0.83278 0.97275 1.21228 0.99417 1.41264 0.92230 0.93637 1.25516 1.01267 0.96150 0.95198 1.69972 1.38340 1.49671 0.97674 0.85757 0.81024 0.78881 0.76799 1.20427 1.20886 1.19983 1.21964 0.96241 0.97164 1.02409 1.21493 1.00201 0.97792 0.98576 1.20407 0.91990 0.98284 1.06198 0.91678 0.91797 0.91227 0.91471 0.91330 0.90855 0.90980 0.83363 0.82796 0.84319 0.91712 0.90404 0.75089 0.91217 0.88281 0.84596 0.93118 0.91549 0.94824 0.93664 0.93800 0.93843 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.13 16 2 C -0.12 -1.22 6.30 30.60 0.19 -1.02 16 3 C 0.05 0.59 4.74 71.98 0.34 0.94 16 4 O -0.34 -6.26 10.14 -92.42 -0.94 -7.20 16 5 C 0.11 2.12 6.69 22.50 0.15 2.27 16 6 C -0.20 -2.77 9.04 22.36 0.20 -2.57 16 7 C -0.08 -0.97 10.04 22.25 0.22 -0.75 16 8 C -0.14 -2.12 9.70 22.28 0.22 -1.90 16 9 C -0.07 -1.25 5.25 -19.88 -0.10 -1.35 16 10 C 0.17 3.65 5.80 85.63 0.50 4.14 16 11 N -0.72 -17.10 5.55 -466.79 -2.59 -19.69 16 12 C 0.52 17.13 7.88 87.66 0.69 17.82 16 13 O -0.57 -23.71 16.32 -3.05 -0.05 -23.76 16 14 C 0.04 1.51 5.99 85.56 0.51 2.02 16 15 N -0.68 -30.17 5.77 -499.46 -2.88 -33.05 16 16 C 0.22 11.06 2.33 44.17 0.10 11.16 16 17 H 0.01 0.50 7.70 -2.38 -0.02 0.49 16 18 C -0.50 -28.08 7.25 25.60 0.19 -27.90 16 19 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 20 C 0.02 0.95 5.28 84.66 0.45 1.40 16 21 N -0.92 -51.94 11.38 21.45 0.24 -51.70 16 22 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 26 C -0.14 -6.34 5.51 30.59 0.17 -6.17 16 27 C -0.12 -5.23 9.40 71.98 0.68 -4.55 16 28 C -0.15 -2.99 9.64 22.36 0.22 -2.78 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 35 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 36 H 0.15 1.31 6.30 -2.91 -0.02 1.29 16 37 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.06 1.60 8.09 -2.38 -0.02 1.58 16 40 H 0.08 1.72 8.08 -2.39 -0.02 1.71 16 41 H 0.41 7.81 8.46 -92.70 -0.78 7.02 16 42 H 0.07 2.10 7.55 -2.38 -0.02 2.08 16 43 H 0.10 3.32 7.92 -2.39 -0.02 3.30 16 44 H 0.33 14.75 6.54 -89.69 -0.59 14.16 16 45 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 46 H 0.07 3.44 6.23 -2.39 -0.01 3.43 16 47 H 0.03 1.35 7.51 -2.39 -0.02 1.34 16 48 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.04 1.70 6.63 -2.38 -0.02 1.68 16 50 H 0.04 2.06 6.85 -2.39 -0.02 2.05 16 51 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -68.80 413.10 0.80 -68.00 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.44 Total: 30.01 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.43 Total: -9.38 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -5.23 Total: -104.44 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.99 Total: -30.96 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.80 0.80 -68.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.583 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds