Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.47087 * 2 1 4 4 O 1.42902 * 109.47190 * 119.99559 * 2 1 3 5 5 C 1.35905 * 116.99897 * 155.06211 * 4 2 1 6 6 C 1.38729 * 120.05314 * 5.47086 * 5 4 2 7 7 C 1.38150 * 119.94399 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.05075 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94169 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47456 * 89.99624 * 9 8 7 11 11 N 1.46498 * 109.47395 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00141 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00202 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46652 * 319.99947 * 14 12 11 16 16 N 1.46895 * 109.47156 * 200.00007 * 14 12 11 17 17 C 1.53006 * 109.47155 * 79.99738 * 14 12 11 18 18 C 1.52999 * 109.46989 * 185.00168 * 17 14 12 19 19 C 1.50702 * 109.46618 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99437 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99841 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00479 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47106 * 89.99781 * 23 21 19 25 25 H 1.48501 * 109.47359 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46937 * 330.00051 * 23 21 19 27 27 C 1.38263 * 120.11857 * 0.25169 * 8 7 6 28 28 C 1.38151 * 120.04939 * 359.45199 * 27 8 7 29 29 H 1.09000 * 109.46922 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47275 * 60.00023 * 1 2 3 31 31 H 1.09002 * 109.46434 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47439 * 240.00319 * 2 1 3 33 33 H 1.09002 * 109.46720 * 59.99879 * 3 2 1 34 34 H 1.08998 * 109.47312 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47044 * 300.00118 * 3 2 1 36 36 H 1.08001 * 120.03318 * 359.97438 * 6 5 4 37 37 H 1.07998 * 119.97639 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47316 * 210.00057 * 9 8 7 39 39 H 1.09005 * 109.47112 * 329.99635 * 9 8 7 40 40 H 1.09000 * 109.47211 * 300.00497 * 10 9 8 41 41 H 1.09005 * 109.46951 * 59.99912 * 10 9 8 42 42 H 0.97002 * 120.00059 * 0.02562 * 11 10 9 43 43 H 1.00910 * 110.99710 * 176.04470 * 16 14 12 44 44 H 1.00897 * 111.00212 * 299.99911 * 16 14 12 45 45 H 1.08999 * 109.46904 * 304.99929 * 17 14 12 46 46 H 1.08997 * 109.46853 * 65.00065 * 17 14 12 47 47 H 1.09001 * 109.47271 * 300.00157 * 18 17 14 48 48 H 1.08999 * 109.46930 * 60.00407 * 18 17 14 49 49 H 0.96997 * 119.99944 * 179.97438 * 22 21 19 50 50 H 1.07996 * 119.97966 * 179.70983 * 27 8 7 51 51 H 1.08001 * 120.02442 * 180.25680 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2472 -1.2236 1.0984 6 6 4.0360 -1.0209 -0.0248 7 6 5.2968 -1.5815 -0.0922 8 6 5.7725 -2.3444 0.9583 9 6 7.1480 -2.9552 0.8818 10 6 8.1728 -1.9786 1.4621 11 7 9.5099 -2.5726 1.3884 12 6 10.5774 -1.8885 1.8452 13 8 10.4311 -0.7812 2.3178 14 6 11.9530 -2.4993 1.7688 15 1 11.8942 -3.5590 2.0176 16 7 12.8433 -1.8215 2.7206 17 6 12.5046 -2.3382 0.3508 18 6 13.8456 -3.0662 0.2395 19 6 14.3886 -2.9080 -1.1574 20 1 13.8329 -2.3442 -1.8921 21 6 15.5952 -3.4821 -1.4971 22 7 16.0688 -3.3445 -2.7163 23 14 16.5566 -4.4567 -0.2261 24 1 16.1455 -5.8826 -0.2810 25 1 18.0093 -4.3489 -0.5148 26 1 16.2793 -3.9133 1.1278 27 6 4.9861 -2.5526 2.0763 28 6 3.7270 -1.9891 2.1511 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 3.6644 -0.4261 -0.8461 37 1 5.9111 -1.4245 -0.9665 38 1 7.1659 -3.8830 1.4538 39 1 7.3950 -3.1652 -0.1589 40 1 8.1549 -1.0508 0.8902 41 1 7.9258 -1.7686 2.5028 42 1 9.6269 -3.4584 1.0107 43 1 13.7544 -2.2550 2.7350 44 1 12.9144 -0.8371 2.5111 45 1 11.7998 -2.7636 -0.3637 46 1 12.6468 -1.2794 0.1345 47 1 14.5504 -2.6409 0.9540 48 1 13.7033 -4.1250 0.4558 49 1 16.9179 -3.7481 -2.9551 50 1 5.3581 -3.1527 2.8935 51 1 3.1148 -2.1486 3.0264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591593903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = -76.092729 kcal Electronic energy + Delta-G solvation = -27417.075275 eV Core-core repulsion = 23508.580918 eV Total energy + Delta-G solvation = -3908.494357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68314 -39.67161 -38.40951 -35.86971 -35.17148 -33.74185 -32.80696 -32.05039 -31.26210 -30.31631 -28.49689 -27.74319 -26.61615 -24.37062 -23.67342 -22.88933 -21.84931 -20.90286 -20.51761 -19.81044 -18.67033 -17.41512 -16.67104 -16.51772 -16.22239 -15.86651 -15.55314 -15.29349 -14.93753 -14.65567 -14.46347 -14.25994 -14.16088 -13.97887 -13.68162 -13.55293 -13.22115 -13.21873 -12.84467 -12.76854 -12.75459 -12.68975 -12.47837 -11.93702 -11.88773 -11.74150 -11.66998 -11.45383 -11.36492 -11.04864 -10.97951 -10.93083 -10.35807 -10.08485 -9.89552 -9.40572 -9.32113 -9.30305 -8.99638 -8.62818 -8.38612 -8.30102 -6.12453 -4.12039 1.03675 1.09471 2.79283 2.90300 3.20305 3.24360 3.32954 3.34233 3.47751 4.25221 4.37001 4.37524 4.47583 4.53724 4.58470 4.64888 4.81813 4.84980 4.99332 5.03080 5.04956 5.06611 5.10959 5.20678 5.22222 5.22648 5.29247 5.32755 5.46257 5.48872 5.57914 5.60812 5.64625 5.68769 5.78844 5.88096 5.98151 6.05660 6.14175 6.32726 6.34807 6.45739 6.50702 6.65439 7.09097 7.10067 7.21180 7.34079 7.64459 7.66694 7.78850 8.42721 8.44623 8.91488 9.48832 11.00741 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001651 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.836105 B =16954.023413 C =17432.270939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.182 4.182 4 O -0.312 6.312 5 C 0.128 3.872 6 C -0.208 4.208 7 C -0.072 4.072 8 C -0.117 4.117 9 C -0.088 4.088 10 C 0.127 3.873 11 N -0.736 5.736 12 C 0.525 3.475 13 O -0.537 6.537 14 C 0.071 3.929 15 H 0.097 0.903 16 N -0.831 5.831 17 C -0.129 4.129 18 C -0.011 4.011 19 C -0.524 4.524 20 H 0.071 0.929 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.073 4.073 28 C -0.152 4.152 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.402 0.598 43 H 0.350 0.650 44 H 0.348 0.652 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.014 0.986 49 H 0.264 0.736 50 H 0.130 0.870 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.378 2.395 6.826 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.227 6.227 5 C 0.083 3.917 6 C -0.227 4.227 7 C -0.090 4.090 8 C -0.118 4.118 9 C -0.126 4.126 10 C 0.003 3.997 11 N -0.389 5.389 12 C 0.312 3.688 13 O -0.413 6.413 14 C -0.044 4.044 15 H 0.114 0.886 16 N -0.363 5.363 17 C -0.169 4.169 18 C -0.048 4.048 19 C -0.562 4.562 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.709 3.291 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.091 4.091 28 C -0.171 4.171 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.236 0.764 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.074 0.926 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -31.001 2.959 7.780 32.099 hybrid contribution 1.288 -0.659 -0.849 1.678 sum -29.713 2.299 6.931 30.597 Atomic orbital electron populations 1.21858 0.92418 1.03184 1.03130 1.22449 0.95422 0.92710 0.87398 1.22402 1.02386 0.95889 1.03237 1.86118 1.29425 1.68241 1.38867 1.19010 0.84638 0.93466 0.94574 1.21276 0.96339 1.06150 0.98938 1.20898 0.94712 0.95171 0.98207 1.19577 0.96149 1.00932 0.95131 1.20729 0.90792 0.98354 1.02694 1.21262 0.80812 0.96261 1.01382 1.45997 1.06806 1.21279 1.64831 1.20781 0.86287 0.85565 0.76184 1.90645 1.86230 1.20014 1.44382 1.21515 0.89943 0.98998 0.93913 0.88556 1.58733 1.16644 1.08162 1.52762 1.22200 0.99642 1.01872 0.93198 1.19579 0.92019 0.95050 0.98189 1.21074 1.05533 1.34235 0.95392 0.91079 1.25045 0.97285 0.95904 0.95201 1.69913 1.20323 1.45089 1.18600 0.86757 0.79248 0.80664 0.82454 1.20269 1.21333 1.18971 1.20892 0.92793 0.98112 0.97303 1.20421 0.97159 1.00774 0.98717 0.91427 0.90456 0.91641 0.90840 0.91365 0.91655 0.90930 0.85322 0.85565 0.90216 0.90116 0.91583 0.91558 0.76416 0.83492 0.83858 0.91904 0.92069 0.96580 0.96770 0.92635 0.85233 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.56 37.16 0.36 -0.35 16 2 C 0.08 0.49 2.85 -26.73 -0.08 0.41 16 3 C -0.18 -1.04 9.17 37.16 0.34 -0.70 16 4 O -0.31 -2.85 9.80 -19.44 -0.19 -3.04 16 5 C 0.13 1.21 6.60 -39.22 -0.26 0.96 16 6 C -0.21 -1.81 8.24 -39.43 -0.32 -2.14 16 7 C -0.07 -0.63 9.69 -39.60 -0.38 -1.02 16 8 C -0.12 -1.03 5.13 -104.60 -0.54 -1.57 16 9 C -0.09 -0.71 5.46 -27.88 -0.15 -0.86 16 10 C 0.13 1.38 5.66 -4.04 -0.02 1.36 16 11 N -0.74 -8.91 5.56 -60.30 -0.33 -9.25 16 12 C 0.53 8.40 7.08 -10.99 -0.08 8.32 16 13 O -0.54 -10.42 16.25 5.56 0.09 -10.33 16 14 C 0.07 1.14 3.21 -68.86 -0.22 0.92 16 15 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 16 N -0.83 -13.55 8.94 -5.65 -0.05 -13.60 16 17 C -0.13 -2.41 4.78 -26.73 -0.13 -2.54 16 18 C -0.01 -0.24 3.81 -27.88 -0.11 -0.35 16 19 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 23 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 27 C -0.07 -0.62 9.69 -39.60 -0.38 -1.01 16 28 C -0.15 -1.38 9.99 -39.43 -0.39 -1.77 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 6.31 -51.93 -0.33 0.10 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 6.91 -51.93 -0.36 0.07 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.13 0.91 5.43 -52.49 -0.28 0.62 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 43 H 0.35 5.52 7.55 -39.29 -0.30 5.23 16 44 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.02 0.35 5.93 -51.93 -0.31 0.05 16 48 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -33.65 413.58 -9.52 -43.17 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.57 Total: 10.31 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.80 Total: -13.34 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.39 Total: -49.34 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.10 Total: -13.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.65 -9.52 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.924 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds