Wall clock time and date at job start Tue Mar 31 2020 19:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.47087 * 2 1 4 4 O 1.42902 * 109.47190 * 119.99559 * 2 1 3 5 5 C 1.35905 * 116.99897 * 155.06211 * 4 2 1 6 6 C 1.38729 * 120.05314 * 5.47086 * 5 4 2 7 7 C 1.38150 * 119.94399 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.05075 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94169 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47456 * 89.99624 * 9 8 7 11 11 N 1.46498 * 109.47395 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00141 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00202 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46652 * 319.99947 * 14 12 11 16 16 N 1.46895 * 109.47156 * 200.00007 * 14 12 11 17 17 C 1.53006 * 109.47155 * 79.99738 * 14 12 11 18 18 C 1.52999 * 109.46989 * 185.00168 * 17 14 12 19 19 C 1.50702 * 109.46618 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99437 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99841 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00479 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47106 * 89.99781 * 23 21 19 25 25 H 1.48501 * 109.47359 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46937 * 330.00051 * 23 21 19 27 27 C 1.38263 * 120.11857 * 0.25169 * 8 7 6 28 28 C 1.38151 * 120.04939 * 359.45199 * 27 8 7 29 29 H 1.09000 * 109.46922 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47275 * 60.00023 * 1 2 3 31 31 H 1.09002 * 109.46434 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47439 * 240.00319 * 2 1 3 33 33 H 1.09002 * 109.46720 * 59.99879 * 3 2 1 34 34 H 1.08998 * 109.47312 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47044 * 300.00118 * 3 2 1 36 36 H 1.08001 * 120.03318 * 359.97438 * 6 5 4 37 37 H 1.07998 * 119.97639 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47316 * 210.00057 * 9 8 7 39 39 H 1.09005 * 109.47112 * 329.99635 * 9 8 7 40 40 H 1.09000 * 109.47211 * 300.00497 * 10 9 8 41 41 H 1.09005 * 109.46951 * 59.99912 * 10 9 8 42 42 H 0.97002 * 120.00059 * 0.02562 * 11 10 9 43 43 H 1.00910 * 110.99710 * 176.04470 * 16 14 12 44 44 H 1.00897 * 111.00212 * 299.99911 * 16 14 12 45 45 H 1.08999 * 109.46904 * 304.99929 * 17 14 12 46 46 H 1.08997 * 109.46853 * 65.00065 * 17 14 12 47 47 H 1.09001 * 109.47271 * 300.00157 * 18 17 14 48 48 H 1.08999 * 109.46930 * 60.00407 * 18 17 14 49 49 H 0.96997 * 119.99944 * 179.97438 * 22 21 19 50 50 H 1.07996 * 119.97966 * 179.70983 * 27 8 7 51 51 H 1.08001 * 120.02442 * 180.25680 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2472 -1.2236 1.0984 6 6 4.0360 -1.0209 -0.0248 7 6 5.2968 -1.5815 -0.0922 8 6 5.7725 -2.3444 0.9583 9 6 7.1480 -2.9552 0.8818 10 6 8.1728 -1.9786 1.4621 11 7 9.5099 -2.5726 1.3884 12 6 10.5774 -1.8885 1.8452 13 8 10.4311 -0.7812 2.3178 14 6 11.9530 -2.4993 1.7688 15 1 11.8942 -3.5590 2.0176 16 7 12.8433 -1.8215 2.7206 17 6 12.5046 -2.3382 0.3508 18 6 13.8456 -3.0662 0.2395 19 6 14.3886 -2.9080 -1.1574 20 1 13.8329 -2.3442 -1.8921 21 6 15.5952 -3.4821 -1.4971 22 7 16.0688 -3.3445 -2.7163 23 14 16.5566 -4.4567 -0.2261 24 1 16.1455 -5.8826 -0.2810 25 1 18.0093 -4.3489 -0.5148 26 1 16.2793 -3.9133 1.1278 27 6 4.9861 -2.5526 2.0763 28 6 3.7270 -1.9891 2.1511 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 3.6644 -0.4261 -0.8461 37 1 5.9111 -1.4245 -0.9665 38 1 7.1659 -3.8830 1.4538 39 1 7.3950 -3.1652 -0.1589 40 1 8.1549 -1.0508 0.8902 41 1 7.9258 -1.7686 2.5028 42 1 9.6269 -3.4584 1.0107 43 1 13.7544 -2.2550 2.7350 44 1 12.9144 -0.8371 2.5111 45 1 11.7998 -2.7636 -0.3637 46 1 12.6468 -1.2794 0.1345 47 1 14.5504 -2.6409 0.9540 48 1 13.7033 -4.1250 0.4558 49 1 16.9179 -3.7481 -2.9551 50 1 5.3581 -3.1527 2.8935 51 1 3.1148 -2.1486 3.0264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591593903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:47 Heat of formation + Delta-G solvation = -98.989478 kcal Electronic energy + Delta-G solvation = -27418.068153 eV Core-core repulsion = 23508.580918 eV Total energy + Delta-G solvation = -3909.487234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32014 -40.88010 -39.06943 -37.22040 -36.28762 -34.79611 -34.32042 -32.84245 -32.06230 -31.89570 -29.42170 -28.27001 -27.93715 -25.69205 -24.38154 -23.93417 -22.51078 -22.17806 -21.53724 -21.00948 -19.28210 -19.09594 -18.29893 -17.29094 -17.13373 -16.44837 -16.38101 -16.29823 -16.22955 -15.91146 -15.54701 -15.47303 -15.25180 -14.90691 -14.66893 -14.56050 -14.39679 -14.20096 -14.07528 -13.74028 -13.49616 -13.34994 -13.25513 -13.06799 -13.01284 -12.69589 -12.52673 -12.42991 -12.35589 -12.08501 -12.02351 -11.84305 -11.67363 -11.62073 -11.49787 -11.39499 -10.77491 -10.76023 -10.09998 -9.94276 -9.64237 -9.04373 -8.28889 -6.34448 0.38483 0.41524 1.39151 1.41647 1.52603 1.63755 2.16671 2.24570 2.37350 2.78082 3.06892 3.74699 3.76248 3.77635 3.83993 3.92970 3.97923 4.01794 4.11099 4.13711 4.13795 4.19101 4.22072 4.40537 4.46525 4.58575 4.61960 4.63619 4.66797 4.75213 4.77877 4.84615 4.91623 4.94387 4.96755 5.08476 5.13313 5.17886 5.22893 5.33718 5.38129 5.40632 5.46810 5.49617 5.63948 5.68520 5.84961 6.08099 6.26227 6.48566 6.49639 6.58040 6.74233 7.27269 7.30522 8.87817 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001651 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.836105 B =16954.023413 C =17432.270939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.179 4.179 4 O -0.328 6.328 5 C 0.115 3.885 6 C -0.214 4.214 7 C -0.082 4.082 8 C -0.126 4.126 9 C -0.076 4.076 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.522 3.478 13 O -0.577 6.577 14 C 0.081 3.919 15 H 0.123 0.877 16 N -0.832 5.832 17 C -0.118 4.118 18 C -0.007 4.007 19 C -0.536 4.536 20 H 0.026 0.974 21 C 0.003 3.997 22 N -0.953 5.953 23 Si 0.954 3.046 24 H -0.264 1.264 25 H -0.290 1.290 26 H -0.238 1.238 27 C -0.076 4.076 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.416 0.584 43 H 0.354 0.646 44 H 0.344 0.656 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.024 0.976 48 H 0.032 0.968 49 H 0.266 0.734 50 H 0.147 0.853 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.069 0.806 8.298 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.236 4.236 4 O -0.242 6.242 5 C 0.070 3.930 6 C -0.233 4.233 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.113 4.113 10 C 0.005 3.995 11 N -0.371 5.371 12 C 0.309 3.691 13 O -0.455 6.455 14 C -0.035 4.035 15 H 0.141 0.859 16 N -0.363 5.363 17 C -0.158 4.158 18 C -0.044 4.044 19 C -0.574 4.574 20 H 0.044 0.956 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.777 3.223 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.161 1.161 27 C -0.093 4.093 28 C -0.185 4.185 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.253 0.747 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.165 0.835 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -31.735 1.340 9.249 33.082 hybrid contribution 1.405 -0.088 -1.405 1.989 sum -30.330 1.253 7.844 31.353 Atomic orbital electron populations 1.21880 0.91164 1.03304 1.03966 1.22693 0.96425 0.92783 0.86825 1.22386 1.01603 0.95718 1.03917 1.86103 1.29338 1.68497 1.40300 1.19226 0.85006 0.93754 0.95001 1.21445 0.96370 1.06261 0.99201 1.21122 0.94940 0.95170 0.98737 1.19709 0.96518 1.01208 0.95299 1.20646 0.89291 0.98048 1.03324 1.21293 0.80745 0.96529 1.00913 1.45886 1.06495 1.21551 1.63189 1.20804 0.87038 0.85148 0.76113 1.90634 1.86793 1.21654 1.46460 1.21464 0.89807 1.00438 0.91748 0.85932 1.58756 1.16982 1.08035 1.52565 1.22023 0.98289 1.00041 0.95487 1.19511 0.93610 0.96537 0.94763 1.21460 1.05442 1.33174 0.97299 0.95551 1.26080 0.98587 0.97269 0.97478 1.70085 1.21099 1.46901 1.21260 0.85603 0.76982 0.79325 0.80391 1.18902 1.21666 1.16146 1.21126 0.92539 0.97990 0.97693 1.20653 0.97696 1.01053 0.99072 0.91734 0.88461 0.91872 0.90310 0.91899 0.92812 0.89024 0.84166 0.84653 0.88350 0.89206 0.93194 0.92322 0.74665 0.83043 0.84308 0.91468 0.94207 0.95738 0.94956 0.92565 0.83535 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.56 71.98 0.69 -0.55 16 2 C 0.07 0.83 2.85 30.60 0.09 0.92 16 3 C -0.18 -1.95 9.17 71.99 0.66 -1.29 16 4 O -0.33 -5.96 9.80 -92.48 -0.91 -6.86 16 5 C 0.12 2.16 6.60 22.50 0.15 2.31 16 6 C -0.21 -3.64 8.24 22.37 0.18 -3.45 16 7 C -0.08 -1.37 9.69 22.25 0.22 -1.16 16 8 C -0.13 -2.07 5.13 -19.85 -0.10 -2.17 16 9 C -0.08 -1.06 5.46 29.85 0.16 -0.89 16 10 C 0.13 2.63 5.66 86.38 0.49 3.12 16 11 N -0.72 -15.90 5.56 -463.07 -2.57 -18.47 16 12 C 0.52 15.88 7.08 87.66 0.62 16.50 16 13 O -0.58 -22.04 16.25 -3.02 -0.05 -22.09 16 14 C 0.08 2.38 3.21 44.17 0.14 2.52 16 15 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 16 N -0.83 -25.40 8.94 -171.79 -1.54 -26.94 16 17 C -0.12 -4.26 4.78 30.60 0.15 -4.12 16 18 C -0.01 -0.29 3.81 29.85 0.11 -0.17 16 19 C -0.54 -29.82 9.66 25.60 0.25 -29.57 16 20 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 21 C 0.00 0.14 5.47 84.65 0.46 0.61 16 22 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 23 Si 0.95 42.17 27.47 68.60 1.88 44.05 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 27 C -0.08 -1.20 9.69 22.25 0.22 -0.99 16 28 C -0.17 -2.93 9.99 22.37 0.22 -2.71 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.85 6.31 -2.39 -0.02 0.84 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.71 6.91 -2.39 -0.02 0.69 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.14 1.91 5.43 -2.91 -0.02 1.89 16 37 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.10 1.04 8.08 -2.39 -0.02 1.02 16 39 H 0.09 1.12 8.08 -2.38 -0.02 1.10 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.42 6.79 8.47 -92.71 -0.79 6.01 16 43 H 0.35 10.18 7.55 -89.69 -0.68 9.51 16 44 H 0.34 11.14 8.58 -89.70 -0.77 10.37 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.02 1.01 5.93 -2.39 -0.01 0.99 16 48 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 49 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -74.18 413.58 0.48 -73.70 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -1.34 Total: 36.33 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.71 Total: -21.10 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.81 Total: -104.03 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.96 Total: -28.95 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -74.18 0.48 -73.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.293 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds