Wall clock time and date at job start Tue Mar 31 2020 19:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47280 * 2 1 4 4 O 1.42897 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.35900 * 117.00088 * 180.02562 * 4 3 2 6 6 C 1.38729 * 120.05623 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94623 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.05583 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.94589 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47163 * 60.00240 * 9 8 7 11 11 C 1.52994 * 109.47368 * 299.99888 * 9 8 7 12 12 N 1.46906 * 109.46990 * 179.97438 * 9 8 7 13 13 C 1.46902 * 110.99573 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 9 15 15 O 1.21277 * 119.99918 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99715 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99702 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47045 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99671 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00183 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99837 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46748 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46978 * 120.00117 * 22 20 18 25 25 H 1.48502 * 109.46880 * 239.99856 * 22 20 18 26 26 C 1.38265 * 120.10989 * 0.24916 * 8 7 6 27 27 C 1.38149 * 120.05729 * 359.45334 * 26 8 7 28 28 H 1.09005 * 109.46609 * 60.00164 * 1 2 3 29 29 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47486 * 300.00464 * 1 2 3 31 31 H 1.08996 * 109.47209 * 239.99881 * 2 1 3 32 32 H 1.09005 * 109.46609 * 119.99836 * 2 1 3 33 33 H 1.09008 * 109.46840 * 59.99497 * 3 2 1 34 34 H 1.08998 * 109.47016 * 299.99843 * 3 2 1 35 35 H 1.08004 * 120.02842 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.97707 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47598 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46781 * 299.99834 * 10 9 8 39 39 H 1.09000 * 109.47321 * 59.99882 * 10 9 8 40 40 H 1.09002 * 109.47331 * 300.00208 * 11 9 8 41 41 H 1.09002 * 109.47018 * 59.99896 * 11 9 8 42 42 H 1.08999 * 109.47836 * 179.97438 * 11 9 8 43 43 H 1.00896 * 111.00309 * 56.04484 * 12 9 8 44 44 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 45 45 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 46 46 H 0.96993 * 119.99587 * 0.02562 * 16 14 13 47 47 H 1.09002 * 109.47247 * 300.00372 * 17 16 14 48 48 H 1.08995 * 109.47162 * 60.00294 * 17 16 14 49 49 H 0.97003 * 119.99678 * 180.02562 * 21 20 18 50 50 H 1.08005 * 119.97337 * 179.70640 * 26 8 7 51 51 H 1.07995 * 120.03073 * 180.24950 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6534 0.0012 6 6 5.4713 2.7273 0.0013 7 6 6.0961 3.9593 0.0025 8 6 5.3419 5.1182 0.0041 9 6 6.0261 6.4610 0.0059 10 6 6.9002 6.5897 -1.2431 11 6 6.9003 6.5862 1.2553 12 7 5.0143 7.5261 0.0068 13 6 5.6462 8.8522 0.0080 14 6 4.5794 9.9168 0.0083 15 8 3.4083 9.6017 0.0080 16 7 4.9270 11.2191 0.0099 17 6 3.8901 12.2539 0.0107 18 6 4.5382 13.6144 0.0118 19 1 5.6149 13.6996 0.0123 20 6 3.7567 14.7503 0.0132 21 7 2.4456 14.6464 0.0131 22 14 4.5601 16.4367 0.0153 23 1 6.0369 16.2814 0.0157 24 1 4.1409 17.1862 -1.1962 25 1 4.1409 17.1831 1.2288 26 6 3.9611 5.0472 0.0098 27 6 3.3315 3.8176 0.0024 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.0609 1.8224 0.0013 36 1 7.1745 4.0175 0.0029 37 1 7.3954 7.5607 -1.2416 38 1 7.6509 5.7994 -1.2442 39 1 6.2774 6.5005 -2.1332 40 1 6.2776 6.4945 2.1452 41 1 7.6510 5.7959 1.2542 42 1 7.3955 7.5572 1.2565 43 1 4.3835 7.4250 0.7878 44 1 6.2662 8.9585 0.8981 45 1 6.2664 8.9601 -0.8819 46 1 5.8637 11.4709 0.0105 47 1 3.2702 12.1478 -0.8796 48 1 3.2697 12.1459 0.9003 49 1 1.8958 15.4456 0.0137 50 1 3.3742 5.9539 0.0158 51 1 2.2529 3.7627 0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796573446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:33 Heat of formation + Delta-G solvation = -60.955465 kcal Electronic energy + Delta-G solvation = -27957.725300 eV Core-core repulsion = 24049.887345 eV Total energy + Delta-G solvation = -3907.837956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54337 -39.33024 -38.38477 -36.48510 -34.25468 -34.12614 -32.34116 -31.84980 -31.06258 -29.01072 -27.89378 -27.43187 -26.94206 -25.67504 -23.10468 -22.87291 -22.17608 -21.40910 -19.74359 -19.40440 -18.44961 -17.54262 -16.59118 -16.29742 -16.24348 -15.54022 -15.16011 -15.13388 -14.77608 -14.62052 -14.52225 -14.19196 -14.00249 -13.91782 -13.52990 -13.29594 -13.15976 -12.90719 -12.72214 -12.55943 -12.54048 -12.31844 -12.03914 -11.98190 -11.86471 -11.66175 -11.51818 -11.40182 -11.24265 -10.96688 -10.90403 -10.85987 -10.83899 -10.73884 -10.31965 -9.37951 -9.10018 -9.03448 -8.73866 -8.41371 -8.16371 -7.85694 -6.16961 -4.23793 1.23347 1.32390 2.92129 3.23035 3.30064 3.33083 3.40407 3.63556 3.76956 4.29451 4.44640 4.46442 4.49117 4.52653 4.74929 4.76496 4.79692 4.95226 4.99588 5.01307 5.02086 5.19208 5.21253 5.25496 5.33779 5.35430 5.40716 5.49122 5.51543 5.52761 5.61022 5.62896 5.65640 5.72155 5.74762 5.78429 5.94793 5.95041 6.15895 6.18130 6.31766 6.49518 6.64385 6.99884 7.24504 7.32399 7.38214 7.46091 7.52718 7.67842 7.97322 8.64519 8.79165 9.13008 9.43152 10.93286 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.001860 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.159407 B =15046.961974 C =16413.822700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.320 6.320 5 C 0.123 3.877 6 C -0.155 4.155 7 C -0.075 4.075 8 C -0.106 4.106 9 C 0.154 3.846 10 C -0.138 4.138 11 C -0.181 4.181 12 N -0.660 5.660 13 C 0.034 3.966 14 C 0.497 3.503 15 O -0.545 6.545 16 N -0.715 5.715 17 C 0.250 3.750 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.061 4.061 27 C -0.207 4.207 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.351 0.649 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.389 0.611 47 H 0.027 0.973 48 H 0.026 0.974 49 H 0.265 0.735 50 H 0.141 0.859 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.326 -27.658 0.812 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.017 4.017 4 O -0.234 6.234 5 C 0.078 3.922 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.106 4.106 9 C 0.063 3.937 10 C -0.195 4.195 11 C -0.240 4.240 12 N -0.293 5.293 13 C -0.098 4.098 14 C 0.281 3.719 15 O -0.423 6.423 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.079 4.079 27 C -0.226 4.226 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.172 0.828 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.222 0.778 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.159 0.841 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.262 -27.942 0.131 28.433 hybrid contribution 0.890 1.369 0.909 1.869 sum 6.152 -26.573 1.040 27.296 Atomic orbital electron populations 1.21699 0.94194 1.02520 1.02404 1.21478 0.96100 0.94866 1.03583 1.22875 0.78520 0.98719 1.01635 1.86014 1.21258 1.27281 1.88823 1.19007 0.92301 0.83998 0.96864 1.20306 0.91286 0.98361 1.07438 1.20706 0.99582 0.90871 0.98180 1.19593 0.93634 0.93782 1.03620 1.19690 0.90518 0.88467 0.95043 1.21920 0.98722 1.01711 0.97175 1.22601 1.00622 1.02501 0.98246 1.60364 1.17770 0.99999 1.51140 1.21949 0.96242 0.89053 1.02536 1.20373 0.89908 0.83869 0.77784 1.90654 1.19394 1.82071 1.50187 1.46437 1.11350 1.05819 1.72770 1.19085 0.86403 0.83857 0.97688 1.21274 0.93365 0.90421 1.53051 0.91857 1.24959 0.94793 0.99586 0.94724 1.69991 1.03714 1.29563 1.49013 0.86362 0.79403 0.83401 0.77746 1.19640 1.20788 1.20823 1.21042 0.94287 0.97552 0.94996 1.21286 1.00041 0.92336 1.08955 0.92257 0.91743 0.92272 0.90897 0.90919 0.91983 0.91931 0.85511 0.85587 0.92098 0.92202 0.91452 0.92368 0.91822 0.91777 0.82833 0.92429 0.88255 0.77825 0.95545 0.95638 0.92514 0.84130 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.76 6.30 -26.73 -0.17 -0.93 16 3 C 0.06 0.46 4.74 37.16 0.18 0.63 16 4 O -0.32 -3.39 10.14 -19.43 -0.20 -3.59 16 5 C 0.12 1.38 6.69 -39.22 -0.26 1.11 16 6 C -0.16 -1.59 9.99 -39.44 -0.39 -1.99 16 7 C -0.07 -0.73 8.70 -39.61 -0.34 -1.08 16 8 C -0.11 -1.17 4.78 -104.60 -0.50 -1.67 16 9 C 0.15 1.64 0.79 -132.75 -0.11 1.54 16 10 C -0.14 -1.35 8.05 37.16 0.30 -1.05 16 11 C -0.18 -1.68 8.04 37.15 0.30 -1.38 16 12 N -0.66 -8.83 4.73 -102.39 -0.48 -9.31 16 13 C 0.03 0.48 5.38 -4.97 -0.03 0.45 16 14 C 0.50 9.72 7.87 -10.98 -0.09 9.63 16 15 O -0.54 -12.95 16.20 5.56 0.09 -12.86 16 16 N -0.71 -14.84 5.55 -61.47 -0.34 -15.18 16 17 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 18 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 22 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.06 -0.73 9.14 -39.60 -0.36 -1.09 16 27 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 34 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.13 0.96 7.09 -52.48 -0.37 0.59 16 37 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 38 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 42 H 0.06 0.57 6.41 -51.93 -0.33 0.24 16 43 H 0.35 4.95 7.24 -39.29 -0.28 4.67 16 44 H 0.06 0.69 6.31 -51.93 -0.33 0.36 16 45 H 0.10 1.23 6.30 -51.93 -0.33 0.90 16 46 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.14 1.82 6.39 -52.48 -0.34 1.49 16 51 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 LS Contribution 408.43 15.07 6.15 6.15 Total: -1.00 -32.63 408.43 -9.28 -41.90 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.31 Total: 8.12 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.91 Total: -5.64 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.09 Total: -49.89 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.11 Total: -16.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.63 -9.28 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796573446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.054 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds